View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7755_high_14 (Length: 325)
Name: NF7755_high_14
Description: NF7755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7755_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 6 - 323
Target Start/End: Complemental strand, 35096688 - 35096370
Alignment:
| Q |
6 |
attaacactaatgaatattttagggtgatgcaaatggaatttgaactctttccctttaaattataagttcaaactcttacgagaactcat-aaaccatga |
104 |
Q |
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| T |
35096688 |
attaacactaatgaatattttagggtgatgcaaatggaatttgaactctttccctttaaattataagttcaaactcttacgagaactcattaaaccatga |
35096589 |
T |
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| Q |
105 |
atccggattataaaggacttgatattcgaaaatgaactaactataggcatcatattaaaattttatttaatttgcaagtttacttgaaattgttgagctt |
204 |
Q |
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| T |
35096588 |
atcctgattataaaggacttgatattcgaaaatgaactaactataggcatcatattaaaattttatttaatttgcaagtttacttgaaattgttgagctt |
35096489 |
T |
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| Q |
205 |
gaagtacgtaaaaccatcaatgattctctgatcagcaggttcaattggatttggatgacatccctgtaattcaactataagctgctcaatttttgctgtg |
304 |
Q |
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| T |
35096488 |
gaagtacgtaaaaccatcaatgattctctgatcagcaggttcaattggatttggatgacatccctgtaattcaactataagctgctcaatttttgctgtg |
35096389 |
T |
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| Q |
305 |
gccaccccattaagttcct |
323 |
Q |
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| T |
35096388 |
gccaccccattaagttcct |
35096370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 145 - 323
Target Start/End: Complemental strand, 35109925 - 35109747
Alignment:
| Q |
145 |
ctataggcatcatattaaaattttatttaatttgcaagtttacttgaaattgttgagcttgaagtacgtaaaaccatcaatgattctctgatcagcaggt |
244 |
Q |
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| T |
35109925 |
ctataggcatgatatgaattttatatttaatttgtaagtttactcgaaattgttgagcttgaagtaagtaaaaccatcaatgattctctgctcagcagga |
35109826 |
T |
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| Q |
245 |
tcaattggatttggatgacatccctgtaattcaactataagctgctcaatttttgctgtggccaccccattaagttcct |
323 |
Q |
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| T |
35109825 |
tcaattggttgtggatgacatccctgcaactcaactataatttcctcaatttttgcagtggccacctcattaagttcct |
35109747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 88 - 215
Target Start/End: Complemental strand, 35102677 - 35102551
Alignment:
| Q |
88 |
gaactcataaaccatgaatccggattataaaggacttgatattcgaaaatgaactaactataggcatcatattaaaattttatttaatttgcaagtttac |
187 |
Q |
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||||||||||||||||||||||| |||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35102677 |
gaactcataaaccatgaatccgggatataaaagacttgatatt-gaatatgaactaactataggcatcatattaaaattttatttaattttcaagtttac |
35102579 |
T |
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| Q |
188 |
ttgaaattgttgagcttgaagtacgtaa |
215 |
Q |
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| T |
35102578 |
tcgaaattgttgagcttgaagtaggtaa |
35102551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 35102527 - 35102479
Alignment:
| Q |
275 |
tcaactataagctgctcaatttttgctgtggccaccccattaagttcct |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35102527 |
tcaactataagctgctcaatttttgctgtggccaccccattaagttcct |
35102479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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