View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7755_high_20 (Length: 300)
Name: NF7755_high_20
Description: NF7755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7755_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-144; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 21 - 290
Target Start/End: Complemental strand, 17844802 - 17844533
Alignment:
| Q |
21 |
ttcctcctccaaagacattgaggaaagctaagagtacaatctcgtaattacctgtgtcacatgttgatgtcaagttgccatctcctaggttttggcccca |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17844802 |
ttcctcctccaaagacattgaggaaagctaagagtacaatctcgtaattacctgtgtcacatgttgatgtcaagttgccatctcctaggttttggcccca |
17844703 |
T |
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| Q |
121 |
gtagacggcaatgtcaccacttgatgatgctttgatagtgaagggaaatatatatattgttaagactaataaaaggatcaatgtttgcctttttgtatcc |
220 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17844702 |
gtagacggcaatgccaccacttgatgatgctttgatagtgaagggaaatatatatattgttaagactaataaaaggatcaatgtttgcctttttgtatcc |
17844603 |
T |
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| Q |
221 |
atattgtgctttgtgtttagttagtttgatcactttagatcgattgatcaatccttttataaggtctctg |
290 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
17844602 |
atattgtgctttgtgtttagttagtttgattactttagatcgattgagcaatccttttataaggtctctg |
17844533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 21 - 290
Target Start/End: Original strand, 17861392 - 17861657
Alignment:
| Q |
21 |
ttcctcctccaaagacattgaggaaagctaagagtacaatctcgtaattacctgtgtcacatgttgatgtcaagttgccatctcctaggttttggcccca |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
17861392 |
ttcctcctccaaagacattgaggaaagctaagagtacaatctcgtaattacctgtgtcacatgttgatgtcaaggtgccatctcctaggttttggcccca |
17861491 |
T |
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| Q |
121 |
gtagacggcaatgtcaccacttgatgatgctttgatagtgaagggaaatatatatattgttaagactaataaaaggatcaatgtttgcctttttgtatcc |
220 |
Q |
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| T |
17861492 |
gtagatggcaatgccaccacttgaagatgctttgatagtgaagggaa------atattgttaagactaacagaagtagcaatgcttgcctttttgtatcc |
17861585 |
T |
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| Q |
221 |
atattgtgc--tttgtgtttagttagtttgatcactttagatcgattgatcaatccttttataaggtctctg |
290 |
Q |
| |
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|| |||||| ||||||||||| ||||||||| ||| |||||||||||| ||| |||||||||||||||||| |
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| T |
17861586 |
attttgtgctttttgtgtttagctagtttgattactgtagatcgattgagcaacccttttataaggtctctg |
17861657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 21 - 289
Target Start/End: Complemental strand, 17885154 - 17884890
Alignment:
| Q |
21 |
ttcctcctccaaagacattgaggaaagctaagagtacaatctcgtaattacctgtgtcacatgttgatgtcaagttgccatctcctaggttttggcccca |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
17885154 |
ttcctcctccaaagacattgaggaaagctaagagtacaatctcgtaattaccagtgtcacatgttgatgtcaaggtgccatctcctaggttttggcccca |
17885055 |
T |
|
| Q |
121 |
gtagacggcaatgtcaccacttgatgatgctttgatagtgaagggaaatatatatattgttaagactaataaaaggatcaatgtttgcctttttgtatcc |
220 |
Q |
| |
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||||| ||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||| | ||||| ||||| |||||||||||||||| |
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| T |
17885054 |
gtagatggcaatgccaccacttgaagatgctttgatagtgaagggaa------atattgttaagactaacagaaggagcaatgcttgcctttttgtatcc |
17884961 |
T |
|
| Q |
221 |
atattgtgc--tttgtgtttagttagtttgatcactttagatcgattgatcaatccttttataaggtctct |
289 |
Q |
| |
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|| || ||| ||||||||||| ||||||||| ||||||||| |||||| ||| ||||||||||||||||| |
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| T |
17884960 |
attttatgctttttgtgtttagctagtttgattactttagattgattgagcaacccttttataaggtctct |
17884890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 21 - 290
Target Start/End: Original strand, 17821203 - 17821468
Alignment:
| Q |
21 |
ttcctcctccaaagacattgaggaaagctaagagtacaatctcgtaattacctgtgtcacatgttgatgtcaagttgccatctcctaggttttggcccca |
120 |
Q |
| |
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||||||||||||||| | ||||||| |||||||||||| ||||||||| | ||||||||||||||||||||| |||| ||| || |||||||||||| |
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| T |
17821203 |
ttcctcctccaaagaattcaaggaaagttaagagtacaatatcgtaattatcagtgtcacatgttgatgtcaaggtgccttctgttacgttttggcccca |
17821302 |
T |
|
| Q |
121 |
gtagacggcaatgtcaccacttgatgatgctttgatagtgaagggaaatatatatattgttaagactaataaaaggatcaatgtttgcctttttgtatcc |
220 |
Q |
| |
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||||| ||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||| ||||| |||| ||||||||||| |
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| T |
17821303 |
gtagatggcaatgccaccacttgaagatgctttgatagtgaagggaa------atattgttaagactaacaaaaggagcaatgcttgcttttttgtatcc |
17821396 |
T |
|
| Q |
221 |
atattgtgc--tttgtgtttagttagtttgatcactttagatcgattgatcaatccttttataaggtctctg |
290 |
Q |
| |
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|| || ||| ||||||||||| ||||||||| ||||||||||||||| ||| |||||||||||||||||| |
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| T |
17821397 |
attttttgctttttgtgtttagctagtttgattactttagatcgattgggcaacccttttataaggtctctg |
17821468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 17904551 - 17904360
Alignment:
| Q |
21 |
ttcctcctccaaagacattgaggaaagctaagagtacaatctcgtaattacctgtgtcacatgttgatgtcaagttgccatctcctaggttttggcccca |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||| ||| |||||| ||||| |
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| T |
17904551 |
ttcctcctccaaagacattgaggaaagctaagagtacaatcttgaaattaccagtgtcacatgttgatgtcaagttgccatcttctaagttttgtcccca |
17904452 |
T |
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| Q |
121 |
gtagacggcaa---tgtcaccacttgatgatgctttgatagtgaagggaaatatatatattgttaagactaataaaaggatcaatgtttgcctttttg |
215 |
Q |
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||||| ||||| || || |||||||||||||||||||||||| || | |||||||||||| || |||||||||||||||||| |||||| |
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| T |
17904451 |
gtagatggcaatattgccatcacttgatgatgctttgatagtgatggaga------atattgttaagatcaacaaaaggatcaatgtttgcatttttg |
17904360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 277
Target Start/End: Complemental strand, 17895195 - 17894945
Alignment:
| Q |
21 |
ttcctcctccaaagacattgaggaaagctaagagtacaatctcgtaattacctgtgtcacatgttgatgtcaagttgccatctcctaggttttggcccca |
120 |
Q |
| |
|
||||| |||||||||||| ||||| ||| |||||||||||||||| ||| |||||||||| || | ||||| |||| ||| || |||||||||||| |
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| T |
17895195 |
ttccttctccaaagacatcaaggaaccctaggagtacaatctcgtaaagaccagtgtcacatgctgctttcaaggtgccttctgctgtgttttggcccca |
17895096 |
T |
|
| Q |
121 |
gtagacggcaatgtcaccacttgatgatgctttgatagtgaagggaaatatatatattgttaagactaataaaaggatcaatgtttgcctttttgtatcc |
220 |
Q |
| |
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||||| || |||| | |||||||||||| | ||| |||||||| | ||||||| || | || |||||||||| || ||| ||||| | | | |
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| T |
17895095 |
gtagatggtaatggaatcacttgatgatggtgtgaaagtgaaggaga------atattgtcaaaatcaacaaaaggatcattgcttgacttttagaactc |
17895002 |
T |
|
| Q |
221 |
atattgtgctttgtgtttagttagtttgatcactttagatcgattgatcaatccttt |
277 |
Q |
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|||||||||||||||||||| ||| |||| |||||||||| ||||| ||| ||||| |
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| T |
17895001 |
atattgtgctttgtgtttagctagactgattactttagatccattgagcaacccttt |
17894945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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