View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7755_high_22 (Length: 249)
Name: NF7755_high_22
Description: NF7755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7755_high_22 |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 8260204 - 8259974
Alignment:
| Q |
1 |
tggtcaacttacaaaagatactaagacaattagtaaagaagttcgatataagaagacaaattttgctacatattacatctttataaactaatcacatttt |
100 |
Q |
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| T |
8260204 |
tggtcaacttacaaaagatactaagacaattagcaaagaaattcgatataagaagacaaattttgctacatattacatctttataaactaatcacatttt |
8260105 |
T |
|
| Q |
101 |
aataggttgtacatttagattcaaccatatttgcaccagaaaatggcagaagctccatcctctgacaccaatctaagattatctggcaaagtagccatag |
200 |
Q |
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| T |
8260104 |
aataggttgtacatttagattcaaccatatttgcaccagaaaatggcagaagctccatcctcaaacaccaatctaagattatctggcaaagtagccatag |
8260005 |
T |
|
| Q |
201 |
tgacaggaggtgctagtggaatcggcgaagc |
231 |
Q |
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| T |
8260004 |
tgacaggaggtgctagtggaatcggcgaagc |
8259974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 68 - 231
Target Start/End: Complemental strand, 8257793 - 8257627
Alignment:
| Q |
68 |
acatattacatctttataaactaatcacattttaataggttgtacatttagattcaacca---tatttgcaccagaaaatggcagaagctccatcctctg |
164 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||| ||||||||||||||||||||||| |
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| T |
8257793 |
acatagtacatctttataaactaatcacattttaataggttgtacatttagattaaagtatattatttgcaccaaaaaatggcagaagctccatcctcaa |
8257694 |
T |
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| Q |
165 |
acaccaatctaagattatctggcaaagtagccatagtgacaggaggtgctagtggaatcggcgaagc |
231 |
Q |
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| T |
8257693 |
acaccaatctaagattatccggcaaaatagccatcgtgacaggaggtgctagtggcatcggtgaagc |
8257627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 113 - 219
Target Start/End: Complemental strand, 8309639 - 8309533
Alignment:
| Q |
113 |
atttagattcaaccatatttgcaccagaaaatggcagaagctccatcctctgacaccaatctaagattatctggcaaagtagccatagtgacaggaggtg |
212 |
Q |
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|||||| |||||| ||||||||| | || ||||||||||||||||| | |||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
8309639 |
atttagtttcaactatatttgcatccaaacatggcagaagctccatctacaaacaccactctaagattatctggcaaagtagccatagtaacaggaggtg |
8309540 |
T |
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| Q |
213 |
ctagtgg |
219 |
Q |
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||||||| |
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| T |
8309539 |
ctagtgg |
8309533 |
T |
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