View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7755_high_5 (Length: 552)
Name: NF7755_high_5
Description: NF7755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7755_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 10 - 538
Target Start/End: Complemental strand, 7884419 - 7883870
Alignment:
| Q |
10 |
aagaatattcctattgacaacataatacactctaattcacatcataatacactctctatttaacatcatagtcctcctaatcatagtataccctaagagc |
109 |
Q |
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| T |
7884419 |
aagaaaattcctattgacaacataatacactctaattcacatcataatacactctctatttaagatcatagtcctcctaatcatagtatacccttagagc |
7884320 |
T |
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| Q |
110 |
tccaaccgtgaatcatcgttcccatgtgttcgataacagcttcaaaaccgcaaccttaattctgtttagcctgctctttcaaagaatacacagaaattgt |
209 |
Q |
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| T |
7884319 |
tccaactgtgaatcatcgttcccatgtgttcgataacagcttcaaaaccgcaaccttaattctgttttgcctgctctttcaaagaatcaacagaaattgt |
7884220 |
T |
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| Q |
210 |
gttaattaattgcatccctcacataatgtttcaatatcaaaca-----tta----------------taaaatagaacattcccaaagtataaagatcaa |
288 |
Q |
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| T |
7884219 |
gttaattaattgcatccctcacataatgtttcaatatcaaacaagatattagacacacacacacacataaaatagaacattcccaaagtataaagatcaa |
7884120 |
T |
|
| Q |
289 |
gtacataatttagaaggaaatgagaattcacctgtgaatagatgaaggtgccaagaattgcaatggcagctccaagagcattgatgggttgaagtggtgt |
388 |
Q |
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| T |
7884119 |
gtacataatttcgaaggaaatgagaattcacctgtgaatagatgaaggtgccaagaattgcaatggcagctccaagagcattgatgggttgaagtggtgt |
7884020 |
T |
|
| Q |
389 |
gtgaaagataatgatggaagagactattacagaaattctcttcattgtatttcctatgctaaatgttaagggagaaatctgatcaagagacatgtatgac |
488 |
Q |
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| T |
7884019 |
gtgaaagataatgatggaagagactattacagaaattctcttcattgtatttcctatgctaaatgttaagggagaaatctgatcaagagacatgtatgac |
7883920 |
T |
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| Q |
489 |
acttgattatataaatggtagaacacactttgagcaaccacccacctata |
538 |
Q |
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| T |
7883919 |
acttgattatataaatggtagaacacactttgagcaaccacccacctata |
7883870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 8e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 299 - 517
Target Start/End: Complemental strand, 54986785 - 54986568
Alignment:
| Q |
299 |
tagaaggaaatgagaattcacctgtgaatagatgaaggtgccaagaattgcaatggcagctccaagagcattgatgggttgaagtggtgtgtgaaagata |
398 |
Q |
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| T |
54986785 |
tagaaggaaaag-gaatgcacctgtgaatagaggaaggtgccgaggattgcaattgcagcaccaagggcattgtttggctgaattggtgtgtggaagata |
54986687 |
T |
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| Q |
399 |
atgatggaagagactattacagaaattctcttcattgtatttcctatgctaaatgttaagggagaaatctgatcaagagacatgtatgacacttgattat |
498 |
Q |
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| T |
54986686 |
atgatcgaagagacaataaccgagattctcttcatcgtgttccctatgctaaatgttaatggagaaatctgatccagagacatataagagacttgattgt |
54986587 |
T |
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| Q |
499 |
ataaatggtagaacacact |
517 |
Q |
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| T |
54986586 |
acaagtgatagaacacact |
54986568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 348 - 511
Target Start/End: Complemental strand, 18397862 - 18397699
Alignment:
| Q |
348 |
gcaatggcagctccaagagcattgatgggttgaagtggtgtgtgaaagataatgatggaagagactattacagaaattctcttcattgtatttcctatgc |
447 |
Q |
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||||| || |||||||||||||||| || |||| |||||| || ||||| || || ||||| ||||| ||||| || | ||||| || ||||| |||| |
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| T |
18397862 |
gcaattgcggctccaagagcattgacaggctgaattggtgtatggaagatgataattgaagatactatgacagatatacgtttcatggtgtttccaatgc |
18397763 |
T |
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| Q |
448 |
taaatgttaagggagaaatctgatcaagagacatgtatgacacttgattatataaatggtagaa |
511 |
Q |
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| T |
18397762 |
taaatgttaggggagagatctcatccaacgacatgtaagacacctgattgtatagatgatagaa |
18397699 |
T |
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