View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7755_high_7 (Length: 473)
Name: NF7755_high_7
Description: NF7755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7755_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 459
Target Start/End: Original strand, 10834997 - 10835418
Alignment:
| Q |
18 |
tactcttttgcaaacacaaatggaacaatcccttgtggaagtgcagcctattttcaaccatgacattcattaccataagttaacaatctcataattttcc |
117 |
Q |
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| T |
10834997 |
tactcttttgcaaacacaaatggaacaatcccttgtggaagtgcagcctattttcaaccatgacattcattaccataagttaacaatctcataattttcc |
10835096 |
T |
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| Q |
118 |
ttcattataatcaatttttgtgataggaatcattcataatatgataagttnnnnnnntaactaaaataccaaagaagcaagagagaatggattagcatat |
217 |
Q |
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| T |
10835097 |
ttcattataatcaatttttgtgataggaatcattcataatatgataagttaaaaaaataactaaaataccaaagaagcaagagagaatggattagcatat |
10835196 |
T |
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| Q |
218 |
attggtcaaatagaaatgcttattaacaccccnnnnnnnnncttcctttcaaagtacttcacatgtattccattaaatttacttaggattcacattattt |
317 |
Q |
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| T |
10835197 |
attggtcaaatagaaatgcttattgacacccttttttttttcttcct-------tacttcacatgtattccattaaatttac----gattcacattattt |
10835285 |
T |
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| Q |
318 |
agtgaaacacatttataaccaacaagatcgtattaaagaattgctagcattgttatgtaagtgtagctcatacagttaaaaatgttgcgcaaacatttaa |
417 |
Q |
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| T |
10835286 |
agtgaaacacattt---------aatatag--ttaaagaattgctagcattgtttcgtaagtgtagttcatatagtcaaataggttgcgaagacatttaa |
10835374 |
T |
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| Q |
418 |
tatgtta--cgatgcacgttcaaacccgcaatacctctcttttt |
459 |
Q |
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| T |
10835375 |
tatattaagagatgcacgttcgaacccgcaatatctcccttttt |
10835418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 33105041 - 33104986
Alignment:
| Q |
18 |
tactcttttgcaaacacaaatggaacaatcccttgtggaagtgcagcctattttca |
73 |
Q |
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| T |
33105041 |
tactccttggcaaacacaaatggaacaatcccttgaggaagtgcagcctattttca |
33104986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 52718386 - 52718332
Alignment:
| Q |
12 |
agattatactcttttgcaaacacaaatggaacaatcccttgtggaagtgcagcct |
66 |
Q |
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||||| || ||||| ||||||||||| |||||||| ||||| ||||||||||||| |
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| T |
52718386 |
agattgtattctttggcaaacacaaagggaacaataccttggggaagtgcagcct |
52718332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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