View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7755_low_1 (Length: 850)
Name: NF7755_low_1
Description: NF7755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7755_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 566 - 832
Target Start/End: Complemental strand, 29416162 - 29415896
Alignment:
| Q |
566 |
gtgccactgaattaaactatttatgtaatcctcaactttagttacaagggcctaagattggcttggctgcagtcgtgaattcaccaatagcgaatctcag |
665 |
Q |
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| T |
29416162 |
gtgccactgaattaaactatttatgtaatcctcaactttagttacaagggcctaagattggcttggctgcagtcgtgaattcaccaatagcgaatctcag |
29416063 |
T |
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| Q |
666 |
tcatcaatctacaatcctagcggctttgtatacgcaatgtggatctcagaagtttcacacacaattgaatctcggcagttcatttcatatcggtcagtcc |
765 |
Q |
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| T |
29416062 |
tcatcaatctacaatcctagaggctttgtatacgcaatgtggatctcagaagtttcacacacaattgaatctcggcagttcatttcatatcggtcagtcc |
29415963 |
T |
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| Q |
766 |
agatcagttattcccaaatcctttaattaaggtaagggtaatagctgaaaagattgtagagtataag |
832 |
Q |
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| T |
29415962 |
agatcagttattcccaaatcctttaactaaggtaagggtaatagctgaaaagattgtagagtataag |
29415896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 256 - 466
Target Start/End: Complemental strand, 29416472 - 29416262
Alignment:
| Q |
256 |
tcatctgtttcttgtgcatctgttaatgtcatctgtctcatgaaagtatcattttctttttataagtgaagatttgattacagttctgtttttactggtt |
355 |
Q |
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| T |
29416472 |
tcatctgtttcttgtgcatctgttaatgtcatctgtctcatgaaagtatcattttctttttataagtgaagatttgattacagttctgtttttactggtt |
29416373 |
T |
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| Q |
356 |
tactgttctatcattttccaaccaatgtgaagttccattctcatcaaagtatcactaaaggaggcacctaccttagtgtttgttttaatttgccttctct |
455 |
Q |
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| T |
29416372 |
tactgttctatcattttccaaccaatgtgaagttccattctcatcaaagtatcactaaaggaggcacctaccttagtgtttgttttaatttgccttctct |
29416273 |
T |
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| Q |
456 |
tccaacaaaaa |
466 |
Q |
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| T |
29416272 |
tccaacaaaaa |
29416262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 183; E-Value: 2e-98
Query Start/End: Original strand, 25 - 219
Target Start/End: Complemental strand, 29416664 - 29416470
Alignment:
| Q |
25 |
gagtctttgtaagataacaattcataaagaaaaccttcttccttttggcggaaaaagtatttaataggcttttttctgggttgcactttggatcttgagc |
124 |
Q |
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| T |
29416664 |
gagtctttgtaagatagcaattcataaagaaaaccttcttccttttggaggaaaaagtatttaataggcttttttctgggtttcactttggatcttgagc |
29416565 |
T |
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| Q |
125 |
atcttgtgctaggatgtgtttctaactatttgtgtcattgagcaaggatgtttaattttacgtcattattagattatgttactgaggtagaatca |
219 |
Q |
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| T |
29416564 |
atcttgtgctaggatgtgtttctaactatttgtgtcattgagcaaggatgtttaattttacgtcattattagattatgttactgaggtagaatca |
29416470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 36 - 263
Target Start/End: Original strand, 24655731 - 24655971
Alignment:
| Q |
36 |
agataacaattcataaagaaaaccttcttccttttggcggaaaaagtatttaataggcttt--tttctgggttgcactttggatcttgagcatcttgtgc |
133 |
Q |
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| T |
24655731 |
agataacaattcataaggaaaaccttcttccttttgaaggaaaaagtatttaataggcattgttttttgggtttcactttggatcttgagcatcttgtgc |
24655830 |
T |
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| Q |
134 |
taggatgtgtttctaactatttg-----------tgtcattgagcaaggatgtttaattttacgtcattattagattatgttactgaggtagaatcaatg |
222 |
Q |
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| T |
24655831 |
taagatgtgtttctaactatttggcctacgtttgtgtcattgaactaggatgtttaattttacgtcattattggattatgttactgaggtagaatcaatg |
24655930 |
T |
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| Q |
223 |
tactgatgcagagaatacaatggactgttaatgtcatctgt |
263 |
Q |
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| T |
24655931 |
tactgatgcagagaatacaatggactgttaatgtcatctgt |
24655971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 275 - 368
Target Start/End: Original strand, 24655955 - 24656048
Alignment:
| Q |
275 |
ctgttaatgtcatctgtctcatgaaagtatcattttctttttataagtgaagatttgattacagttctgtttttactggtttactgttctatca |
368 |
Q |
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| T |
24655955 |
ctgttaatgtcatctgtctcatgaaagtatcattttctttttataagtgaaggtttgattacagttctgtttttacttgtttactgttctatca |
24656048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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