View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7755_low_11 (Length: 440)
Name: NF7755_low_11
Description: NF7755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7755_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 294
Target Start/End: Original strand, 1533413 - 1533693
Alignment:
| Q |
14 |
gaataaaaatgttgctatttttaaaatcttagtgtatgcttgagacaatagagatcggcgagcacacaccaaacacatatggttgaacatttcactcaca |
113 |
Q |
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| T |
1533413 |
gaataaaaatgttgctatttttaaaatcttagtgtatgcttgagacaatagagattggcgagcacacaccaaacatatatggttgaacatttcactcaca |
1533512 |
T |
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| Q |
114 |
tcttacgatacattttttgattatggatcgaattcagtactttgaagcttataacactcgcacacattgtatatcgactatttgtgctggatcgcgttag |
213 |
Q |
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| T |
1533513 |
tcttacgatacattttttgactatggatcgaattcagtactctgaagcttataacactcgcacacattgtgtatcgactacttgtgctgaatcgtgttag |
1533612 |
T |
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| Q |
214 |
ttcgtggttcattagaaaccacgcccaaatttacattttcaattgaaattagtgcacaacaggcaccaaccaacaatcatc |
294 |
Q |
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| T |
1533613 |
ttcgtggttcattagaaaccatgcccaaatttacatttctaattgaaattagtgcacaccaggcaccaaacaacaatcatc |
1533693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 356 - 426
Target Start/End: Original strand, 1533753 - 1533823
Alignment:
| Q |
356 |
gttgaagacaaataaagtgaaggttgtattctgaattatgatagtatgccacgtttctatatcttctttat |
426 |
Q |
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| T |
1533753 |
gttgaagacaaataaagtgaaggttgtattctgaattatgatagtatgccacgtttctatatcttctttat |
1533823 |
T |
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