View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7755_low_12 (Length: 436)
Name: NF7755_low_12
Description: NF7755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7755_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 32 - 420
Target Start/End: Original strand, 42227398 - 42227767
Alignment:
| Q |
32 |
gggaaataaaactttgggacatatatagaacgcagaaacaaagagttgagtattctttatttgagcatgtaatgcaaagaaaaatgacataattgaataa |
131 |
Q |
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| T |
42227398 |
gggaaataaaactttgggacata----gaacgcagaaacaaagagttgagtattctttatttgagcatgtaatggaaagaaaaatgacataattgaataa |
42227493 |
T |
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| Q |
132 |
aaagagtgaagagaaagaattatttagtattcggtattcccatttgcttaacaatatagaaacaaatgaagaggcatactttgtgtaagttgttgtattg |
231 |
Q |
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| T |
42227494 |
aaagagtgaagagaaagaattatt--------------cccatttgcttaacaatatagaaacaaatgaagaggcatactttgtgtcagttggtgtat-g |
42227578 |
T |
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| Q |
232 |
acttttgagcatatgatttggcaaccctttatagaagatgagtactattttcatgctatgatgttgggtccaaactaattttgttgtatgagttcgaata |
331 |
Q |
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| T |
42227579 |
acttttgagcatatgatttggcaaccctttatagaagatgagtacaattttcctgctatgatgttgggtccaaactaattttgttgtatgagttcgaata |
42227678 |
T |
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| Q |
332 |
tctcttgtgctccctttaataaaaagtttgcttatcgaaaataactcatatttgtatagctccctcagtcacaacttccctttgtttct |
420 |
Q |
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|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42227679 |
tctcttgtactccctttattaaaaagtttgcttatcgaaaataactcatatttgtatagctccctcagtcacaacttccctttgtttct |
42227767 |
T |
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