View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7755_low_13 (Length: 417)
Name: NF7755_low_13
Description: NF7755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7755_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 14 - 405
Target Start/End: Original strand, 49213119 - 49213510
Alignment:
| Q |
14 |
caggaaacacaatgttttctatctcacttgtgactagaaagaaatggtacaatatcttcttgaagcagcatttgcagcatcaaaaatacttaattgtaat |
113 |
Q |
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| T |
49213119 |
caggaaacacaatgttttctatctcacttgtgactagaaagaaatggtacaatatcttcttgaagcagcatttgcagcatcaaaaatacttaattgtaat |
49213218 |
T |
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| Q |
114 |
ttttgggcaaaaatgctatttagtacaaagcatttccatcacgaaattcacaaatatcaatgtgatactttttgtggtggaaatgttagttctgtatttg |
213 |
Q |
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| T |
49213219 |
ttttgggcaaaaatgctatttagtacaaagcatttccatcacgaaattcacaaatatcaatgtgatactttttgtggtggaaattttagttctgtatttg |
49213318 |
T |
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| Q |
214 |
tcggatacattggaggaatgagtgataggaaacaaccaatcacatgttgtgtacaatttcgtgaggcttgttttcgcgataagtagtattttcctttttt |
313 |
Q |
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| T |
49213319 |
tcggatacattggaggaatgagtgataggaaacaaccaatcacatgttgtgtacaatttcgtgaggcttgttttcgcgataagtagtattttcctttttt |
49213418 |
T |
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| Q |
314 |
ggtattgtactgaaactctttatattctatctttttatgtcctttgatgacttcgattgtatatgccggtcacctgccttgttcttctttct |
405 |
Q |
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| T |
49213419 |
ggtattgtactgaaactctttacattctatctttttatgtcctttgatgacttcgattgtatatgccggtcacctgccttgttcttctttct |
49213510 |
T |
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