View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7755_low_16 (Length: 354)
Name: NF7755_low_16
Description: NF7755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7755_low_16 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 219672 - 219334
Alignment:
| Q |
1 |
tttaaacaatcttagtaccacaggatttgcagggcacattccttgattgatccatgccttgaacatcgccgaatcaaatgggtcgcatctgccaccaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
219672 |
tttaaacaatcttagtaccacaggatttgcagggcacattccttgattgatccatgccttgaacatcgccgaatcaaatgggtcgcatctgccaccaaat |
219573 |
T |
|
| Q |
101 |
atcatatcatnnnnnnnnnnnnnttcaaattgtgtgccccaagtctaacatataatnnnnnnn-tacgaaagaaagaaagaaacatacccaaatcgctta |
199 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
219572 |
atcatatcataaaaaaaataaa-ttcaaattgtgtgccccaagtctaacatataataaaaaaaatacgaaagaaagaaagaaacatacccaaatcgttta |
219474 |
T |
|
| Q |
200 |
gctttataataaggaatattagagatacaagtgtcgtccacgtccaaaacccaagcatcttgatgagtaatagtagtagtagtagaagtagaaagagtaa |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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|
| T |
219473 |
gctttataataaggaatattagagatacaagtgtcgtccacgtccaaaacccaagcatcttgatgagtagtagtagta---gtagaagtagaaagagtaa |
219377 |
T |
|
| Q |
300 |
tctgagatgcataaaacataatttcatccacgatgaggttcat |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
219376 |
tctgagatgcataaaacataatttcatccacgatgaggttcat |
219334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 696232 - 695894
Alignment:
| Q |
1 |
tttaaacaatcttagtaccacaggatttgcagggcacattccttgattgatccatgccttgaacatcgccgaatcaaatgggtcgcatctgccaccaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
696232 |
tttaaacaatcttagtaccacaggatttgcagggcacattccttgattgatccatgccttgaacatcgccgaatcaaatgggtcgcatctgccaccaaat |
696133 |
T |
|
| Q |
101 |
atcatatcatnnnnnnnnnnnnnttcaaattgtgtgccccaagtctaacatataatnnnnnnn-tacgaaagaaagaaagaaacatacccaaatcgctta |
199 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
696132 |
atcatatcataaaaaaaataaa-ttcaaattgtgtgccccaagtctaacatataataaaaaaaatacgaaagaaagaaagaaacatacccaaatcgttta |
696034 |
T |
|
| Q |
200 |
gctttataataaggaatattagagatacaagtgtcgtccacgtccaaaacccaagcatcttgatgagtaatagtagtagtagtagaagtagaaagagtaa |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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|
| T |
696033 |
gctttataataaggaatattagagatacaagtgtcgtccacgtccaaaacccaagcatcttgatgagtagtagtagta---gtagaagtagaaagagtaa |
695937 |
T |
|
| Q |
300 |
tctgagatgcataaaacataatttcatccacgatgaggttcat |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
695936 |
tctgagatgcataaaacataatttcatccacgatgaggttcat |
695894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 733295 - 732957
Alignment:
| Q |
1 |
tttaaacaatcttagtaccacaggatttgcagggcacattccttgattgatccatgccttgaacatcgccgaatcaaatgggtcgcatctgccaccaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
733295 |
tttaaacaatcttagtaccacaggatttgcagggcacattccttgattgatccatgccttgaacatcgccgaatcaaatgggtcgcatctgccaccaaat |
733196 |
T |
|
| Q |
101 |
atcatatcatnnnnnnnnnnnnnttcaaattgtgtgccccaagtctaacatataatnnnnnnn-tacgaaagaaagaaagaaacatacccaaatcgctta |
199 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
733195 |
atcatatcataaaaaaaataaa-ttcaaattgtgtgccccaagtctaacatataataaaaaaaatacgaaagaaagaaagaaacatacccaaatcgttta |
733097 |
T |
|
| Q |
200 |
gctttataataaggaatattagagatacaagtgtcgtccacgtccaaaacccaagcatcttgatgagtaatagtagtagtagtagaagtagaaagagtaa |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
733096 |
gctttataataaggaatattagagatacaagtgtcgtccacgtccaaaacccaagcatcttgatgagtagtagtagta---gtagaagtagaaagagtaa |
733000 |
T |
|
| Q |
300 |
tctgagatgcataaaacataatttcatccacgatgaggttcat |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
732999 |
tctgagatgcataaaacataatttcatccacgatgaggttcat |
732957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 857191 - 856853
Alignment:
| Q |
1 |
tttaaacaatcttagtaccacaggatttgcagggcacattccttgattgatccatgccttgaacatcgccgaatcaaatgggtcgcatctgccaccaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
857191 |
tttaaacaatcttagtaccacaggatttgcagggcacattccttgattgatccatgccttgaacatcgccgaatcaaatgggtcgcatctgccaccaaat |
857092 |
T |
|
| Q |
101 |
atcatatcatnnnnnnnnnnnnnttcaaattgtgtgccccaagtctaacatataatnnnnnnn-tacgaaagaaagaaagaaacatacccaaatcgctta |
199 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
857091 |
atcatatcataaaaaaaataaa-ttcaaattgtgtgccccaagtctaacatataataaaaaaaatacgaaagaaagaaagaaacatacccaaatcgttta |
856993 |
T |
|
| Q |
200 |
gctttataataaggaatattagagatacaagtgtcgtccacgtccaaaacccaagcatcttgatgagtaatagtagtagtagtagaagtagaaagagtaa |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
856992 |
gctttataataaggaatattagagatacaagtgtcgtccacgtccaaaacccaagcatcttgatgagtagtagtagta---gtagaagtagaaagagtaa |
856896 |
T |
|
| Q |
300 |
tctgagatgcataaaacataatttcatccacgatgaggttcat |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
856895 |
tctgagatgcataaaacataatttcatccacgatgaggttcat |
856853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 215463 - 215354
Alignment:
| Q |
1 |
tttaaacaatcttagtaccacaggatttgcagggcacattccttgattgatccatgccttgaacatcgccgaatcaaatgggtcgcatctgccaccaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
215463 |
tttaaacaatcttagtaccacaggatttgcagggcacattccttgattgatccatgccttgaacatcgccgaatcaaatgggtcgcatctgccaccaaat |
215364 |
T |
|
| Q |
101 |
atcatatcat |
110 |
Q |
| |
|
|||||||||| |
|
|
| T |
215363 |
atcatatcat |
215354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 688827 - 688718
Alignment:
| Q |
1 |
tttaaacaatcttagtaccacaggatttgcagggcacattccttgattgatccatgccttgaacatcgccgaatcaaatgggtcgcatctgccaccaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
688827 |
tttaaacaatcttagtaccacaggatttgcagggcacattccttgattgatccatgccttgaacatcgccgaatcaaatgggtcgcatctgccaccaaat |
688728 |
T |
|
| Q |
101 |
atcatatcat |
110 |
Q |
| |
|
|||||||||| |
|
|
| T |
688727 |
atcatatcat |
688718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 729086 - 728977
Alignment:
| Q |
1 |
tttaaacaatcttagtaccacaggatttgcagggcacattccttgattgatccatgccttgaacatcgccgaatcaaatgggtcgcatctgccaccaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
729086 |
tttaaacaatcttagtaccacaggatttgcagggcacattccttgattgatccatgccttgaacatcgccgaatcaaatgggtcgcatctgccaccaaat |
728987 |
T |
|
| Q |
101 |
atcatatcat |
110 |
Q |
| |
|
|||||||||| |
|
|
| T |
728986 |
atcatatcat |
728977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 852981 - 852872
Alignment:
| Q |
1 |
tttaaacaatcttagtaccacaggatttgcagggcacattccttgattgatccatgccttgaacatcgccgaatcaaatgggtcgcatctgccaccaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
852981 |
tttaaacaatcttagtaccacaggatttgcagggcacattccttgattgatccatgccttgaacatcgccgaatcaaatgggtcgcatctgccaccaaat |
852882 |
T |
|
| Q |
101 |
atcatatcat |
110 |
Q |
| |
|
|||||||||| |
|
|
| T |
852881 |
atcatatcat |
852872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 692023 - 691972
Alignment:
| Q |
1 |
tttaaacaatcttagtaccacaggatttgcagggcacattccttgattgatc |
52 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
692023 |
tttaaacaatcttagtaccacaggatttgcagggcacattccttgattgatc |
691972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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