View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7755_low_17 (Length: 338)
Name: NF7755_low_17
Description: NF7755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7755_low_17 |
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| [»] scaffold0085 (1 HSPs) |
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Alignment Details
Target: scaffold0085 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: scaffold0085
Description:
Target: scaffold0085; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 43803 - 44114
Alignment:
| Q |
18 |
gttatgtgcacattttcaaattagatcatttaaaatgagacggaggaagtaccatcattattatatttgaccagctttaggttctgagaagttatcctca |
117 |
Q |
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| T |
43803 |
gttatgtgcacattttcatct-agatcatttaaaataagacggaggaagtactatcattattatatttggccagctttaggttcttaggagttatcctca |
43901 |
T |
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| Q |
118 |
cactattgctaaatagtaaatcatatatcaattgtagatataacaaaatatcccatcccatacgacctaatcacatgtgaatgcccaggttcag-ttttt |
216 |
Q |
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| T |
43902 |
cactattgctaaatagtaaatcttatatcaattgtagatataacaaaatatcccatcccatacgacctaatcacatgtgaatgcccaggtacagtttttt |
44001 |
T |
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| Q |
217 |
tcatcttaattttagcaaagtaccataacataaatgcataccacatatggaaaacttaaagccaaacaaaaagttaaaaatggataggtcttatcacaca |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
44002 |
tcatcttaattttagcaaagtaccataacataaatgcataccacatatggaaaacttaaagccaaacaaaaagttaaaaatggatagttcttatcgcaca |
44101 |
T |
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| Q |
317 |
gtattatattctt |
329 |
Q |
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| T |
44102 |
gtattattttctt |
44114 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 9281480 - 9281522
Alignment:
| Q |
27 |
acattttcaaattagatcatttaaaatgagacggaggaagtac |
69 |
Q |
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| T |
9281480 |
acattttcaaattaggtcatttaaaatgggacggagggagtac |
9281522 |
T |
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