View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7755_low_21 (Length: 319)

Name: NF7755_low_21
Description: NF7755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7755_low_21
NF7755_low_21
[»] chr7 (3 HSPs)
chr7 (1-305)||(3930078-3930382)
chr7 (40-305)||(21317320-21317585)
chr7 (117-299)||(3928732-3928914)
[»] chr2 (2 HSPs)
chr2 (1-289)||(13576055-13576343)
chr2 (1-58)||(13565612-13565669)
[»] chr8 (6 HSPs)
chr8 (40-303)||(43479793-43480056)
chr8 (41-300)||(38799242-38799501)
chr8 (41-300)||(38822016-38822275)
chr8 (39-300)||(26591913-26592174)
chr8 (38-301)||(25865444-25865707)
chr8 (236-300)||(41943886-41943950)
[»] scaffold0197 (1 HSPs)
scaffold0197 (8-305)||(30726-31022)
[»] chr5 (5 HSPs)
chr5 (41-294)||(12531239-12531492)
chr5 (41-294)||(12547127-12547380)
chr5 (42-177)||(9866903-9867038)
chr5 (77-160)||(9894432-9894515)
chr5 (120-240)||(9869841-9869961)
[»] chr4 (4 HSPs)
chr4 (38-303)||(24860290-24860555)
chr4 (38-289)||(34748499-34748750)
chr4 (254-294)||(44771097-44771137)
chr4 (200-279)||(40035830-40035909)


Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 3930382 - 3930078
Alignment:
Q  1 aaccctaattttctttctctccactttccttccattctcaatggcacgtaccaaacaaacagcaagaaaatccaccggcggcaaagccccacggaaacaa 100  Q
    ||||| ||||||||||||||||| ||||  ||  ||| |||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||    
T  3930382 aaccccaattttctttctctccaatttctctctgttcccaatggcacgtaccaaacaaacagcacgaaaatccaccggaggaaaagccccacggaaacaa 3930283  T
Q  101 ctcgccaccaaagccgcaagaaaatcagcaccggcaaccggaggagtgaagaagccacacagattccgtccaggaacagtcgcattgcgcgaaatccgaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||| || || ||||| |||||||||||||||||||||||||||||| | || || ||||| |    
T  3930282 ctcgccaccaaagccgcaagaaaatcagcaccggcaaccggtggtgtaaagaaaccacacagattccgtccaggaacagtcgcacttcgtgagatccgca 3930183  T
Q  201 agtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctcagatttcagag 300  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  3930182 agtatcagaagagcactgaacttctcattaggaaacttccattccaaagattggttcgtgaaatcgctcaggatttcaaaactgatcttcgatttcagag 3930083  T
Q  301 tagtg 305  Q
    |||||    
T  3930082 tagtg 3930078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 40 - 305
Target Start/End: Original strand, 21317320 - 21317585
Alignment:
Q  40 aatggcacgtaccaaacaaacagcaagaaaatccaccggcggcaaagccccacggaaacaactcgccaccaaagccgcaagaaaatcagcaccggcaacc 139  Q
    ||||||||||||||||||||||||| | |||||||||||||| ||||||||||| |||||||||||||||||||||||| | |||||||| ||||| |||    
T  21317320 aatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccaccaaagccgcacggaaatcagctccggcgacc 21317419  T
Q  140 ggaggagtgaagaagccacacagattccgtccaggaacagtcgcattgcgcgaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttc 239  Q
    ||||||||||||||||||||| | |||||||| ||||| || ||  | || |||||||| ||||| |||||||||||||||||||| || || |||||||    
T  21317420 ggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttc 21317519  T
Q  240 cattccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctcagatttcagagtagtg 305  Q
    |||||||| |  | ||||||||||||||||||||||||||||| ||||||||||| ||||| ||||    
T  21317520 cattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtg 21317585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 117 - 299
Target Start/End: Complemental strand, 3928914 - 3928732
Alignment:
Q  117 caagaaaatcagcaccggcaaccggaggagtgaagaagccacacagattccgtccaggaacagtcgcattgcgcgaaatccgaaagtatcagaagagcac 216  Q
    ||||||||||||||| ||| || |||||| |||||||||||||||||||| | |||||||||||||||||||| |||||| | |||||||| |||| |||    
T  3928914 caagaaaatcagcactggcgacaggaggaatgaagaagccacacagattcagaccaggaacagtcgcattgcgtgaaatcaggaagtatcaaaagatcac 3928815  T
Q  217 tgagcttctcattaggaaacttccattccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctcagatttcaga 299  Q
    |||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||| |||| ||||    
T  3928814 tgagcttctcattaggaaacttcctttcaaaagattggttcatgaaatcgctcaggatttcaaaactgatctccgattccaga 3928732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 13576055 - 13576343
Alignment:
Q  1 aaccctaattttctttctctccactttccttccattctcaatggcacgtaccaaacaaacagcaagaaaatccaccggcggcaaagccccacggaaacaa 100  Q
    ||||||||||||||||||||||||||||| ||  |||  ||||||||||||||||||||||||  | |||||||||||||| ||||| ||||| ||||||    
T  13576055 aaccctaattttctttctctccactttccctctcttcaaaatggcacgtaccaaacaaacagcccgcaaatccaccggcggaaaagcaccacgcaaacaa 13576154  T
Q  101 ctcgccaccaaagccgcaagaaaatcagcaccggcaaccggaggagtgaagaagccacacagattccgtccaggaacagtcgcattgcgcgaaatccgaa 200  Q
    |||||||| ||||||||  | ||||| || ||||| |||||||||||||||||||||||  | |||||||| ||||| |||||  | || |||||||| |    
T  13576155 ctcgccacaaaagccgctcggaaatccgctccggccaccggaggagtgaagaagccacatcgtttccgtcctggaaccgtcgctcttcgtgaaatccgca 13576254  T
Q  201 agtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctc 289  Q
    |||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||    
T  13576255 agtatcagaagagcaccgagcttctcataaggaagcttccattccaaagattggttcgagaaattgctcaggatttcaaaacggatctc 13576343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 13565612 - 13565669
Alignment:
Q  1 aaccctaattttctttctctccactttccttccattctcaatggcacgtaccaaacaa 58  Q
    ||||||||||||||||||||||| || || ||| |||  ||||||||| |||||||||    
T  13565612 aaccctaattttctttctctccatttcccctcctttcaaaatggcacgaaccaaacaa 13565669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 144; Significance: 1e-75; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 40 - 303
Target Start/End: Complemental strand, 43480056 - 43479793
Alignment:
Q  40 aatggcacgtaccaaacaaacagcaagaaaatccaccggcggcaaagccccacggaaacaactcgccaccaaagccgcaagaaaatcagcaccggcaacc 139  Q
    |||||| |||||||||||||| ||  | ||||||||||| |||||||| ||| |||||||||||||||||||||||||  | |||||||| ||||| |||    
T  43480056 aatggctcgtaccaaacaaaccgctcgcaaatccaccggtggcaaagctccaaggaaacaactcgccaccaaagccgctcggaaatcagctccggccacc 43479957  T
Q  140 ggaggagtgaagaagccacacagattccgtccaggaacagtcgcattgcgcgaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttc 239  Q
    |||||||||||||||||||||||||||||||| ||||| || ||  | || || ||||| |||||||||||||| || ||||||||||| ||||| ||||    
T  43479956 ggaggagtgaagaagccacacagattccgtcctggaactgttgctcttcgtgagatccgcaagtatcagaagagtaccgagcttctcatcaggaagcttc 43479857  T
Q  240 cattccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctcagatttcagagtag 303  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||| || ||||||||    
T  43479856 cattccaaagattggttagggaaatcgctcaggatttcaaaactgatctcaggttccagagtag 43479793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 41 - 300
Target Start/End: Original strand, 38799242 - 38799501
Alignment:
Q  41 atggcacgtaccaaacaaacagcaagaaaatccaccggcggcaaagccccacggaaacaactcgccaccaaagccgcaagaaaatcagcaccggcaaccg 140  Q
    |||||||||||||| ||||||||  | ||||||||||||||||| || || ||||| || ||||||||||| |||||  | |||||||| ||||| ||||    
T  38799242 atggcacgtaccaagcaaacagctcgcaaatccaccggcggcaaggctccccggaagcagctcgccaccaaggccgctcggaaatcagctccggcgaccg 38799341  T
Q  141 gaggagtgaagaagccacacagattccgtccaggaacagtcgcattgcgcgaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttcc 240  Q
    ||||||||||||||||||| |||||| | || ||||| || || ||| | || ||||| |||||||||||||||||||||||||||||  | ||||||||    
T  38799342 gaggagtgaagaagccacatagattcagacctggaactgttgctttgagagagatccgtaagtatcagaagagcactgagcttctcatccgtaaacttcc 38799441  T
Q  241 attccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctcagatttcagag 300  Q
    ||||||| |  | ||||||||||| ||||| |||||||| || ||||| ||||| |||||    
T  38799442 attccaacgtcttgttcgtgaaattgctcaagatttcaagacagatctgagattccagag 38799501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 41 - 300
Target Start/End: Complemental strand, 38822275 - 38822016
Alignment:
Q  41 atggcacgtaccaaacaaacagcaagaaaatccaccggcggcaaagccccacggaaacaactcgccaccaaagccgcaagaaaatcagcaccggcaaccg 140  Q
    |||||||||||||| ||||||||  | ||||||||||||||||| || || ||||| || ||||||||||| |||||  | |||||||| ||||| ||||    
T  38822275 atggcacgtaccaagcaaacagctcgcaaatccaccggcggcaaggctccccggaagcagctcgccaccaaggccgctcggaaatcagctccggcgaccg 38822176  T
Q  141 gaggagtgaagaagccacacagattccgtccaggaacagtcgcattgcgcgaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttcc 240  Q
    ||||||||||||||||||| |||||| | || ||||| || || ||| | || ||||| |||||||||||||||||||||||||||||  | ||||||||    
T  38822175 gaggagtgaagaagccacatagattcagacctggaactgttgctttgagagagatccgtaagtatcagaagagcactgagcttctcatccgtaaacttcc 38822076  T
Q  241 attccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctcagatttcagag 300  Q
    ||||||| |  | ||||||||||| ||||| |||||||| || ||||| ||||| |||||    
T  38822075 attccaacgtcttgttcgtgaaattgctcaagatttcaagacagatctgagattccagag 38822016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 39 - 300
Target Start/End: Original strand, 26591913 - 26592174
Alignment:
Q  39 caatggcacgtaccaaacaaacagcaagaaaatccaccggcggcaaagccccacggaaacaactcgccaccaaagccgcaagaaaatcagcaccggcaac 138  Q
    ||||||||||||| || ||||| ||| | || ||||||||||||||||| ||| |||| || ||||| || ||||||||  | ||||| || ||||| ||    
T  26591913 caatggcacgtactaagcaaactgcacgcaagtccaccggcggcaaagcaccaaggaagcagctcgcaacaaaagccgctcggaaatccgctccggcgac 26592012  T
Q  139 cggaggagtgaagaagccacacagattccgtccaggaacagtcgcattgcgcgaaatccgaaagtatcagaagagcactgagcttctcattaggaaactt 238  Q
    ||| |||||||||||||||||| | ||| | |||||||| |||||| | || || ||||| ||||| ||||||||||| || ||||||||| | ||||||    
T  26592013 cggcggagtgaagaagccacaccgtttcaggccaggaaccgtcgcactccgtgagatccgcaagtaccagaagagcaccgaacttctcattcgcaaactt 26592112  T
Q  239 ccattccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctcagatttcagag 300  Q
    || |||||  |  | |||||||| || |||||||||||||| || |||||| | ||||||||    
T  26592113 cctttccagcgtcttgttcgtgagattgctcaggatttcaagacggatctccgttttcagag 26592174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 38 - 301
Target Start/End: Original strand, 25865444 - 25865707
Alignment:
Q  38 tcaatggcacgtaccaaacaaacagcaagaaaatccaccggcggcaaagccccacggaaacaactcgccaccaaagccgcaagaaaatcagcaccggcaa 137  Q
    |||||||| ||||| || ||||| ||  | ||||||||||||||||| || ||| |||| |||||||| |||||||| ||||| ||||| || ||  | |    
T  25865444 tcaatggctcgtacgaagcaaactgctcgcaaatccaccggcggcaaggcaccaaggaagcaactcgcgaccaaagctgcaaggaaatctgctccaacca 25865543  T
Q  138 ccggaggagtgaagaagccacacagattccgtccaggaacagtcgcattgcgcgaaatccgaaagtatcagaagagcactgagcttctcattaggaaact 237  Q
    |||| |||||||||||||| ||  | |  ||||| ||||| || ||  | || || ||||| |||||||||||||| ||||||||| | ||  | || ||    
T  25865544 ccggcggagtgaagaagcctcatcgttatcgtcctggaaccgttgctcttcgtgagatccgtaagtatcagaagagtactgagcttttgatccgtaagct 25865643  T
Q  238 tccattccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctcagatttcagagt 301  Q
    |||||||||  |  | ||||||||||| ||||||||||||||||| ||||| ||||||||||||    
T  25865644 tccattccagcgtcttgttcgtgaaattgctcaggatttcaaaacggatctgagatttcagagt 25865707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 300
Target Start/End: Original strand, 41943886 - 41943950
Alignment:
Q  236 cttccattccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctcagatttcagag 300  Q
    |||||||||||| |  | ||||||||||| ||||| |||||||| || ||||||||||| |||||    
T  41943886 cttccattccaacgtcttgttcgtgaaattgctcaagatttcaagacggatctcagattccagag 41943950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 8 - 305
Target Start/End: Original strand, 30726 - 31022
Alignment:
Q  8 attttctttctctccactttccttccattctcaatggcacgtaccaaacaaacagcaagaaaatccaccggcggcaaagccccacggaaacaactcgcca 107  Q
    ||||||||||||| || |||| || || ||  ||||||||||||||||||||||||| | |||||||||||||| ||||||||||| |||||||||||||    
T  30726 attttctttctcttcaatttcttttcaatcaaaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgcca 30825  T
Q  108 ccaaagccgcaagaaaatcagcaccggcaaccggaggagtgaagaagccacacagattccgtccaggaacagtcgcattgcgcgaaatccgaaagtatca 207  Q
    ||||||||||| | |||||||| ||||| |||||||||||||||||||||||| | |||||||| ||||| || ||  | || |||||||| ||||| ||    
T  30826 ccaaagccgcacggaaatcagctccggcgaccggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtacca 30925  T
Q  208 gaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctcagatttcagagtagtg 305  Q
    |||||||||||||||||| || || |||||| |||||||| |  | |||||||||||||||||||||||||||||  |||||||||| ||||| ||||    
T  30926 gaagagcactgagcttctgataagaaaactt-cattccaacgtcttgttcgtgaaatcgctcaggatttcaaaacctatctcagattccagagcagtg 31022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 41 - 294
Target Start/End: Original strand, 12531239 - 12531492
Alignment:
Q  41 atggcacgtaccaaacaaacagcaagaaaatccaccggcggcaaagccccacggaaacaactcgccaccaaagccgcaagaaaatcagcaccggcaaccg 140  Q
    ||||| |||||||| ||||||||  | |||||||||||||| ||||| ||| |||| || || ||||| ||||| ||  | ||||| || ||||||||||    
T  12531239 atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaagcagcttgccactaaagctgcccggaaatctgctccggcaaccg 12531338  T
Q  141 gaggagtgaagaagccacacagattccgtccaggaacagtcgcattgcgcgaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttcc 240  Q
    ||||||| ||||||||||||||||||||||||||||| || ||| | || || ||||| ||||| ||||||||||| |||||||| || ||||| |||||    
T  12531339 gaggagtcaagaagccacacagattccgtccaggaactgttgcacttcgtgagatccgcaagtaccagaagagcaccgagcttcttataaggaagcttcc 12531438  T
Q  241 attccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctcagatt 294  Q
    |||||| ||  | ||||||||||||||||| ||||||||||| |||||| ||||    
T  12531439 attccagaggcttgttcgtgaaatcgctcaagatttcaaaacagatctccgatt 12531492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 41 - 294
Target Start/End: Complemental strand, 12547380 - 12547127
Alignment:
Q  41 atggcacgtaccaaacaaacagcaagaaaatccaccggcggcaaagccccacggaaacaactcgccaccaaagccgcaagaaaatcagcaccggcaaccg 140  Q
    ||||| |||||||| ||||||||  | |||||||||||||| ||||| ||| |||| || || ||||| ||||| ||  | ||||| || ||||||||||    
T  12547380 atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaagcagcttgccactaaagctgcccggaaatctgctccggcaaccg 12547281  T
Q  141 gaggagtgaagaagccacacagattccgtccaggaacagtcgcattgcgcgaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttcc 240  Q
    ||||||| ||||||||||||||||||||||||||||| || ||| | || || ||||| ||||| ||||||||||| |||||||| || ||||| |||||    
T  12547280 gaggagtcaagaagccacacagattccgtccaggaactgttgcacttcgtgagatccgcaagtaccagaagagcaccgagcttcttataaggaagcttcc 12547181  T
Q  241 attccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctcagatt 294  Q
    |||||| ||  | ||||||||||||||||| ||||||||||| |||||| ||||    
T  12547180 attccagaggcttgttcgtgaaatcgctcaagatttcaaaacagatctccgatt 12547127  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 42 - 177
Target Start/End: Complemental strand, 9867038 - 9866903
Alignment:
Q  42 tggcacgtaccaaacaaacagcaagaaaatccaccggcggcaaagccccacggaaacaactcgccaccaaagccgcaagaaaatcagcaccggcaaccgg 141  Q
    ||||| ||||||||||||| ||  | |||||||||||||| ||||| ||| | ||  | || ||||| ||||| ||  | |||||||| |||||||| ||    
T  9867038 tggcatgtaccaaacaaacggctcgcaaatccaccggcggtaaagcaccatgaaagaagctggccacaaaagctgctcggaaatcagctccggcaacggg 9866939  T
Q  142 aggagtgaagaagccacacagattccgtccaggaac 177  Q
    ||||||||||||||||||| | |||||||| |||||    
T  9866938 aggagtgaagaagccacaccgtttccgtcctggaac 9866903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 160
Target Start/End: Original strand, 9894432 - 9894515
Alignment:
Q  77 ggcggcaaagccccacggaaacaactcgccaccaaagccgcaagaaaatcagcaccggcaaccggaggagtgaagaagccacac 160  Q
    ||||||||||| ||||| || || || ||||||||||||||  |||||||||| | |||| |||||  ||||||||||||||||    
T  9894432 ggcggcaaagcaccacgaaagcagcttgccaccaaagccgctcgaaaatcagctctggcagccggaacagtgaagaagccacac 9894515  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 240
Target Start/End: Original strand, 9869841 - 9869961
Alignment:
Q  120 gaaaatcagcaccggcaaccggaggagtgaagaagccacacagattccgtccaggaacagtcgcattgcgcgaaatccgaaagtatcagaagagcactga 219  Q
    |||||||||| | ||||||||| | ||||||||| |||||| | ||| |||  ||||| || ||  | || || ||||| ||||| ||||||||||||||    
T  9869841 gaaaatcagctctggcaaccggggcagtgaagaaaccacactgtttctgtcatggaaccgttgctcttcgtgagatccgtaagtaccagaagagcactga 9869940  T
Q  220 gcttctcattaggaaacttcc 240  Q
    |||||| || ||||| |||||    
T  9869941 gcttctaataaggaagcttcc 9869961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 38 - 303
Target Start/End: Original strand, 24860290 - 24860555
Alignment:
Q  38 tcaatggcacgtaccaaacaaacagcaagaaaatccaccggcggcaaagccccacggaaacaactcgccaccaaagccgcaagaaaatcagcaccggcaa 137  Q
    |||||||| ||||| || ||||||||  | ||||||||||| || ||||| ||| |||| || || || || ||||||||  | ||||| || || || |    
T  24860290 tcaatggctcgtacaaagcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagcca 24860389  T
Q  138 ccggaggagtgaagaagccacacagattccgtccaggaacagtcgcattgcgcgaaatccgaaagtatcagaagagcactgagcttctcattaggaaact 237  Q
    |||| ||||||||||| || ||| | |||||||| ||||| || ||| | ||||||||||| ||||| || || ||||| |||||||||||  | |||||    
T  24860390 ccggcggagtgaagaaacctcaccgtttccgtcccggaaccgttgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaact 24860489  T
Q  238 tccattccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctcagatttcagagtag 303  Q
    |||||||||| |  | ||||||||||||||||| ||||||||||| |||||| | || ||||||||    
T  24860490 tccattccaacgtctcgttcgtgaaatcgctcaagatttcaaaaccgatctccgtttccagagtag 24860555  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 289
Target Start/End: Original strand, 34748499 - 34748750
Alignment:
Q  38 tcaatggcacgtaccaaacaaacagcaagaaaatccaccggcggcaaagccccacggaaacaactcgccaccaaagccgcaagaaaatcagcaccggcaa 137  Q
    ||||||||||||||||| ||||| ||  | |||||||| || || ||||| ||| |||| ||||| ||||| ||||||||  | ||||| || ||||| |    
T  34748499 tcaatggcacgtaccaagcaaaccgctcgcaaatccactggaggtaaagctccaaggaagcaactagccacaaaagccgctcgcaaatctgctccggcca 34748598  T
Q  138 ccggaggagtgaagaagccacacagattccgtccaggaacagtcgcattgcgcgaaatccgaaagtatcagaagagcactgagcttctcattaggaaact 237  Q
    |||| ||||||||||| || ||| | ||| | |||||||| |||||  | || || ||||| ||||| ||||||||||| || || |||||  | |||||    
T  34748599 ccggtggagtgaagaaacctcaccgtttcagaccaggaaccgtcgctctacgtgagatccgtaagtaccagaagagcaccgaactcctcatccgcaaact 34748698  T
Q  238 tccattccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctc 289  Q
     || |||||  |  |||||||||| ||||||||||||||||| |||||||||    
T  34748699 ccccttccagcgtctggttcgtgagatcgctcaggatttcaagactgatctc 34748750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 254 - 294
Target Start/End: Complemental strand, 44771137 - 44771097
Alignment:
Q  254 gttcgtgaaatcgctcaggatttcaaaactgatctcagatt 294  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  44771137 gttcgtgaaatcgctcaggatttcaaaaccgatctcagatt 44771097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 279
Target Start/End: Original strand, 40035830 - 40035909
Alignment:
Q  200 aagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaatcgctcaggatttcaa 279  Q
    |||||||||||||| ||||||||  | || ||||| || |||||||| || |||||||||||||| |||||||| |||||    
T  40035830 aagtatcagaagagtactgagctcttgatcaggaagctcccattccagaggttggttcgtgaaattgctcaggacttcaa 40035909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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