View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7755_low_24 (Length: 311)
Name: NF7755_low_24
Description: NF7755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7755_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 54657251 - 54657538
Alignment:
| Q |
1 |
tgaataaaagtgaattgaactaaagtaaatttatgtttagatacattcacataaaattggtttttatcgcaggagcaagatcaagaccgatctcttgctg |
100 |
Q |
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| T |
54657251 |
tgaataaaagtgaatagaactaaagtaaatttatgtttagatacattcacataaaattggtttttatcacaggagcaagatcaagaccgatctcttgctg |
54657350 |
T |
|
| Q |
101 |
ccataattctttggagtttgtggaagagtagtaataccaagctttgggaggctacaaacacttcactgaccctcattgtctcttgtgcttatgatgtgct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54657351 |
ccataattctttggagtttgtggaagagtagtaataccaagctttgggaggctacaaacacttcactgaccctcattgtctcttgtgcttatgatgtgct |
54657450 |
T |
|
| Q |
201 |
acacgaatggagctgcatgcaacgagctaagcatccggcaagcccccaagatcagcaacggacgtggaccaagccacagcccggccac |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
54657451 |
acacgaatggagctgcatgcaacgagctaagcatccggcaagcccccaagatcagcaacggacgtggaccaagccacaggccggccac |
54657538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 85 - 283
Target Start/End: Original strand, 43733389 - 43733587
Alignment:
| Q |
85 |
gaccgatctcttgctgccataattctttggagtttgtggaagagtagtaataccaagctttgggaggctacaaacacttcactgaccctcattgtctctt |
184 |
Q |
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|||||| |||| |||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| | | | | ||||||| |
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| T |
43733389 |
gaccgacctctggctgccatgattctttggagtttgtggaagagtcgttataccaagctttgggaggctacaaacacttcacccatctttaatgtctctc |
43733488 |
T |
|
| Q |
185 |
gtgcttatgatgtgctacacgaatggagctgcatgcaacgagctaagcatccggcaagcccccaagatcagcaacggacgtggaccaagccacagcccg |
283 |
Q |
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| T |
43733489 |
atgcttatgatgtgctccacgaatggagctgcatgtaacgagctaagtatcatgcaagcccccaagatcatcaattgacgtggaccaagccgcagcccg |
43733587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 82 - 288
Target Start/End: Complemental strand, 28570860 - 28570658
Alignment:
| Q |
82 |
caagaccgatctcttgctgccataattctttggagtttgtggaagagtagtaataccaagctttgggaggctacaaacacttcactgaccctcattgtct |
181 |
Q |
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||||||||| |||| ||| |||| |||||||||||| | | ||||||| |||||||||||||||||||||||| |||||||| || ||| ||||||||| |
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| T |
28570860 |
caagaccgacctctggctaccatgattctttggagtctctagaagagtcgtaataccaagctttgggaggctagaaacacttgacccaccttcattgtct |
28570761 |
T |
|
| Q |
182 |
cttgtgcttatgatgtgctacacgaatggagctgcatgcaacgagctaagcatccggcaagcccccaagatcagcaacggacgtggaccaagccacagcc |
281 |
Q |
| |
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||| |||| ||||||||||||||||||||||||||||||||||||||||| | |||||| ||| ||||||||||| || |||||||||||| || || |
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| T |
28570760 |
cttatgctcatgatgtgctacacgaatggagctgcatgcaacgagctaag---cgggcaag-ccctaagatcagcaatcgatgtggaccaagccgcaacc |
28570665 |
T |
|
| Q |
282 |
cggccac |
288 |
Q |
| |
|
|| |||| |
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|
| T |
28570664 |
cgaccac |
28570658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 97 - 259
Target Start/End: Complemental strand, 29928997 - 29928835
Alignment:
| Q |
97 |
gctgccataattctttggagtttgtggaagagtagtaataccaagctttgggaggctacaaacacttcactgaccctcattgtctcttgtgcttatgatg |
196 |
Q |
| |
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|||||||| |||||||| ||||| |||||| || |||| || ||||||||| | |||| ||||||||| ||| ||||||||||| |||| |||||| |
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| T |
29928997 |
gctgccatgattctttgaagtttatggaagtgtcgtaacacgaagctttggaaagctagtgacacttcacccaccttcattgtctctcatgctcatgatg |
29928898 |
T |
|
| Q |
197 |
tgctacacgaatggagctgcatgcaacgagctaagcatccggcaagcccccaagatcagcaac |
259 |
Q |
| |
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|| |||| ||||||| |||||||||| |||||| |||| | |||||||||||||||| |||| |
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|
| T |
29928897 |
tgttacatgaatggatttgcatgcaacaagctaaacatctgacaagcccccaagatcaacaac |
29928835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 42703227 - 42703168
Alignment:
| Q |
191 |
atgatgtgctacacgaatggagctgcatgcaacgagctaagcatccggcaagcccccaag |
250 |
Q |
| |
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||||||||||| |||||||||| | ||||||| ||||||| |||||||| ||||||||| |
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| T |
42703227 |
atgatgtgctatacgaatggagtttcatgcaaagagctaaacatccggcgtgcccccaag |
42703168 |
T |
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