View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7755_low_28 (Length: 248)
Name: NF7755_low_28
Description: NF7755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7755_low_28 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 124 - 248
Target Start/End: Original strand, 46248535 - 46248659
Alignment:
| Q |
124 |
acagattctaatatgggcaatacaaaggcaagagttttaccctgcagattcacaaaagtagacaattcggatcaaataagggtctgtttgtattgacttt |
223 |
Q |
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| T |
46248535 |
acagattctaatatgggcaatacaaaggcaagagttttaccctgcagattcacaaaagtagacaattcggatcaaataagggtctgtttgtattgacttt |
46248634 |
T |
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| Q |
224 |
tggtttatctactggtataagcact |
248 |
Q |
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| T |
46248635 |
tggtttatctactggtataagcact |
46248659 |
T |
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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 46248429 - 46248469
Alignment:
| Q |
18 |
aacacttggtttcggaggccctccatagccccccttccttg |
58 |
Q |
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| T |
46248429 |
aacacttggtttcggaggccctccatagccccccttccttg |
46248469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 169
Target Start/End: Original strand, 20123411 - 20123450
Alignment:
| Q |
130 |
tctaatatgggcaatacaaaggcaagagttttaccctgca |
169 |
Q |
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| T |
20123411 |
tctaatatgggcaacacaaatgcaagagttttaccctgca |
20123450 |
T |
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