View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7755_low_3 (Length: 634)
Name: NF7755_low_3
Description: NF7755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7755_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Original strand, 46248837 - 46249279
Alignment:
| Q |
1 |
ccacaaaatcaaataatcacattcctctcatgaaagactaattaattaatgatgcacttccaactataatacatcaggacaaaatggactgaaattacac |
100 |
Q |
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| T |
46248837 |
ccacaaaatcaaataatcacattcctctcatgaaagactaattaattaatgatgcacttccaactataatacatcaggacaaaatggactgaaattacac |
46248936 |
T |
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| Q |
101 |
ataactttagcaattttataataaataactacaaaacattgatacaaacactcgacatgacacttatactgacagattgtcatcgaacacgccttcaata |
200 |
Q |
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| T |
46248937 |
acaactttagcaattttatgataaataaccacaaaacattgatacaaacactcgacatgacacttatactgacagattgtcatcggacacgccttcaata |
46249036 |
T |
|
| Q |
201 |
taaaatgtcaatgaatgctatagataaagaaagggaaaagaaataaagagaatgacacctgacctgaccagtgcgagctctaccaaccaaatcacaacct |
300 |
Q |
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| T |
46249037 |
taaaatgtcaatgaatgctatagataaagaaagggaaaagaaataaagagaatgacacctgacctgaccagtgcgagctctaccaaccaaatcacaacct |
46249136 |
T |
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| Q |
301 |
tgaagaatgatatcaaaagtcatagcctgaataggaaacaatgactcaattcccttttccttcaacttttctctcaacggctccgatatcttaaatttag |
400 |
Q |
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| T |
46249137 |
tgaagaatgatatcaaaagtcatagcctgaataggaaacaatgactcaattcccttttccttcaacttttctctcaacggctccgatatcttaaatttag |
46249236 |
T |
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| Q |
401 |
aaatcccattgggatcctccaccttgttttccattactacaaa |
443 |
Q |
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| T |
46249237 |
aaatcccattgggatcctccaccttgttttccattactacaaa |
46249279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 489 - 560
Target Start/End: Original strand, 46249325 - 46249396
Alignment:
| Q |
489 |
atccaactctaaactattctcattatcgtctctattggtcgtcgtcattgtctataacacggaagccttacg |
560 |
Q |
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| T |
46249325 |
atccaactctaaactattctcattatcgtctccattggtcgtcgtcattgtctataacatggaagccttacg |
46249396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 341
Target Start/End: Original strand, 20124833 - 20124912
Alignment:
| Q |
262 |
acctgaccagtgcgagctctaccaaccaaatcacaaccttgaagaatgatatcaaaagtcatagcctgaataggaaacaa |
341 |
Q |
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| T |
20124833 |
acctgtccagtacgagcacgaccaaccaaatcagacccatcaagaatggtattaaaagtcatagcttgaatcggaaacaa |
20124912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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