View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7755_low_32 (Length: 218)

Name: NF7755_low_32
Description: NF7755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7755_low_32
NF7755_low_32
[»] chr3 (28 HSPs)
chr3 (1-218)||(9838561-9838778)
chr3 (1-218)||(9849439-9849656)
chr3 (3-218)||(10375997-10376212)
chr3 (39-218)||(11768972-11769151)
chr3 (3-218)||(10434196-10434411)
chr3 (3-218)||(10088492-10088707)
chr3 (3-218)||(10195375-10195590)
chr3 (1-218)||(10363950-10364167)
chr3 (1-218)||(10889006-10889223)
chr3 (3-218)||(10076968-10077186)
chr3 (1-218)||(8860986-8861203)
chr3 (1-218)||(10580301-10580518)
chr3 (1-218)||(11160169-11160386)
chr3 (1-218)||(11149006-11149223)
chr3 (1-218)||(11131178-11131395)
chr3 (123-218)||(10126750-10126845)
chr3 (123-218)||(10184064-10184159)
chr3 (123-218)||(10260520-10260615)
chr3 (123-218)||(10663348-10663443)
chr3 (123-218)||(10031825-10031920)
chr3 (123-191)||(10500375-10500443)
chr3 (39-205)||(13332642-13332808)
chr3 (39-193)||(13160718-13160872)
chr3 (123-191)||(10527157-10527225)
chr3 (39-205)||(13170769-13170935)
chr3 (39-205)||(13289403-13289569)
chr3 (39-205)||(13343827-13343993)
chr3 (131-191)||(11782185-11782245)
[»] chr2 (1 HSPs)
chr2 (3-215)||(26906599-26906811)
[»] scaffold0083 (1 HSPs)
scaffold0083 (39-193)||(49985-50139)
[»] chr8 (2 HSPs)
chr8 (1-191)||(44957888-44958078)
chr8 (129-191)||(11484842-11484904)
[»] scaffold0002 (2 HSPs)
scaffold0002 (39-205)||(146104-146270)
scaffold0002 (39-205)||(136053-136219)
[»] chr6 (1 HSPs)
chr6 (39-205)||(31679898-31680064)
[»] chr4 (1 HSPs)
chr4 (123-191)||(17853126-17853194)


Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 9838561 - 9838778
Alignment:
Q  1 tggaacttcctttcttctccttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgtgatagcttgcaactttatgcacagaataaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9838561 tggaacttcctttcttctccttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgtgatagcttgcaactttatgcacagaataaag 9838660  T
Q  101 atatacttggtttgcaaactaaaagtgctagagtttctcgtagaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaagggtgacaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9838661 atatacttggtttgcaaactaaaagtgctagagtttctcgtagaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaagggtgacaa 9838760  T
Q  201 agagacaataatgaacat 218  Q
    ||||||||||||||||||    
T  9838761 agagacaataatgaacat 9838778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 9849439 - 9849656
Alignment:
Q  1 tggaacttcctttcttctccttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgtgatagcttgcaactttatgcacagaataaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9849439 tggaacttcctttcttctccttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgtgatagcttgcaactttatgcacagaataaag 9849538  T
Q  101 atatacttggtttgcaaactaaaagtgctagagtttctcgtagaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaagggtgacaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9849539 atatacttggtttgcaaactaaaagtgctagagtttctcgtagaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaagggtgacaa 9849638  T
Q  201 agagacaataatgaacat 218  Q
    ||||||||||||||||||    
T  9849639 agagacaataatgaacat 9849656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 3 - 218
Target Start/End: Complemental strand, 10376212 - 10375997
Alignment:
Q  3 gaacttcctttcttctccttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgtgatagcttgcaactttatgcacagaataaagat 102  Q
    |||||||||||||||||||||||| |  || |||| |||||||||||| || |||||| |||||||||||||| ||||| | | ||||||| ||||||||    
T  10376212 gaacttcctttcttctccttttaacaccttctacagagagatcaattctcaaatgaaggtcatgtgtgatagcctgcaattctttgcacagtataaagat 10376113  T
Q  103 atacttggtttgcaaactaaaagtgctagagtttctcgtagaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaagggtgacaaag 202  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||| ||| ||||    
T  10376112 atacttggtctgcaaactaaaagtggtagagtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgataaag 10376013  T
Q  203 agacaataatgaacat 218  Q
    | || |||||||||||    
T  10376012 acactataatgaacat 10375997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 39 - 218
Target Start/End: Original strand, 11768972 - 11769151
Alignment:
Q  39 agagatcaattcccagatgaagatcatgtgtgatagcttgcaactttatgcacagaataaagatatacttggtttgcaaactaaaagtgctagagtttct 138  Q
    ||||||||||||||| ||||||||||||||||| ||| ||||||||| |||||| |||||||||||| | ||||||||||||||||||||||||||||||    
T  11768972 agagatcaattcccatatgaagatcatgtgtgaaagcctgcaactttttgcacaaaataaagatatattaggtttgcaaactaaaagtgctagagtttct 11769071  T
Q  139 cgtagaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaagggtgacaaagagacaataatgaacat 218  Q
    |||||||||||||| ||||||| |||||||||||||||| | ||||||||||||  ||||||||||||||||||||||||    
T  11769072 cgtagaacaccttcaagttcagtggtaaatgaatctgtcatagtgggtaggaagaatgacaaagagacaataatgaacat 11769151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 3 - 218
Target Start/End: Complemental strand, 10434411 - 10434196
Alignment:
Q  3 gaacttcctttcttctccttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgtgatagcttgcaactttatgcacagaataaagat 102  Q
    |||||||||||| ||||||||||||||||| |||| |||||||||||| || ||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  10434411 gaacttcctttcatctccttttaatagtttctacagagagatcaattctcaaatgaagatcatgtgtgaaagcttgcaactttttgcacagaataaagat 10434312  T
Q  103 atacttggtttgcaaactaaaagtgctagagtttctcgtagaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaagggtgacaaag 202  Q
    ||||||||| ||||||| |||||||  |||||||||| |||||  ||||| ||||| | ||| ||||||||| || |||| || ||||||| ||||||||    
T  10434311 atacttggtctgcaaaccaaaagtgggagagtttctcatagaaatccttcaagttctgtggtcaatgaatctttcatggttggaaggaaggatgacaaag 10434212  T
Q  203 agacaataatgaacat 218  Q
    ||||||||||||||||    
T  10434211 agacaataatgaacat 10434196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 3 - 218
Target Start/End: Original strand, 10088492 - 10088707
Alignment:
Q  3 gaacttcctttcttctccttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgtgatagcttgcaactttatgcacagaataaagat 102  Q
    |||||||||||| |||||||||||||| || |||| |||||||||||| || ||||||||||||||||| ||||||||| | | ||||||||||||||||    
T  10088492 gaacttcctttcatctccttttaatagcttctacagagagatcaattctcaaatgaagatcatgtgtgaaagcttgcaattgtttgcacagaataaagat 10088591  T
Q  103 atacttggtttgcaaactaaaagtgctagagtttctcgtagaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaagggtgacaaag 202  Q
    ||||||||| ||||||||||||  || || ||||| | |||||| ||||| ||||| | |||||||||||||||| ||||||||||||||| ||| ||||    
T  10088592 atacttggtctgcaaactaaaatcgcaagggtttcacatagaactccttcaagttcggtggtaaatgaatctgtcatggtgggtaggaaggatgataaag 10088691  T
Q  203 agacaataatgaacat 218  Q
    ||||||||||||||||    
T  10088692 agacaataatgaacat 10088707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 3 - 218
Target Start/End: Original strand, 10195375 - 10195590
Alignment:
Q  3 gaacttcctttcttctccttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgtgatagcttgcaactttatgcacagaataaagat 102  Q
    |||||||||||| |||||||||||||| || |||| |||||||||||| || ||||||||||||||||| ||||||||| | | ||||||||||||||||    
T  10195375 gaacttcctttcatctccttttaatagcttctacagagagatcaattctcaaatgaagatcatgtgtgaaagcttgcaattgtttgcacagaataaagat 10195474  T
Q  103 atacttggtttgcaaactaaaagtgctagagtttctcgtagaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaagggtgacaaag 202  Q
    ||||||||| ||||||||||||  || || ||||| | |||||| ||||| ||||||| |||||||||||||||| |||||||||| |||| ||| ||||    
T  10195475 atacttggtctgcaaactaaaaacgcaagggtttcacatagaactccttcaagttcagtggtaaatgaatctgtcatggtgggtagaaaggatgataaag 10195574  T
Q  203 agacaataatgaacat 218  Q
    ||||||||||||||||    
T  10195575 agacaataatgaacat 10195590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 10364167 - 10363950
Alignment:
Q  1 tggaacttcctttcttctccttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgtgatagcttgcaactttatgcacagaataaag 100  Q
    |||||||||||||  |||||||| ||||| || || | ||||||||||||||||||||||||||||||||| ||| |||||| || || | |||  ||||    
T  10364167 tggaacttccttttatctcctttcaatagcttctatagagagatcaattcccagatgaagatcatgtgtgaaagcctgcaacattttgaaaagagaaaag 10364068  T
Q  101 atatacttggtttgcaaactaaaagtgctagagtttctcgtagaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaagggtgacaa 200  Q
    |||||||| ||||||||||||||||  | || ||||| |||||||||||||| ||||||| |||||||||||||||| ||||||||||||||| ||||||    
T  10364067 atatacttcgtttgcaaactaaaagcacaagggtttcacgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaa 10363968  T
Q  201 agagacaataatgaacat 218  Q
    ||||||||||||||||||    
T  10363967 agagacaataatgaacat 10363950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 10889006 - 10889223
Alignment:
Q  1 tggaacttcctttcttctccttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgtgatagcttgcaactttatgcacagaataaag 100  Q
    |||| ||||||||||||||||||||| |  || |||| ||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||  ||||||    
T  10889006 tggagcttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagatcatgtgtaatagcttgcaactttttgcacaacataaag 10889105  T
Q  101 atatacttggtttgcaaactaaaagtgctagagtttctcgtagaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaagggtgacaa 200  Q
    |||| ||||||||||||||||||| || || ||||||||||||||| ||||| |||||||  || |||||||||||| |||| ||||| || | ||| ||    
T  10889106 atatccttggtttgcaaactaaaattggtaaagtttctcgtagaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatgataa 10889205  T
Q  201 agagacaataatgaacat 218  Q
    ||||||||||||||||||    
T  10889206 agagacaataatgaacat 10889223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 3 - 218
Target Start/End: Original strand, 10076968 - 10077186
Alignment:
Q  3 gaacttcctttcttctccttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgtgatagcttgcaactttatgcacagaataaagat 102  Q
    |||||||||||| |||||||||||||| || ||||||||||||||||| || | ||||||||||||||| || |||||| | | ||||||||||||||||    
T  10076968 gaacttcctttcatctccttttaatagcttctacaaagagatcaattctcaaacgaagatcatgtgtgaaaggttgcaattgtttgcacagaataaagat 10077067  T
Q  103 atacttggtttgcaaactaaaagtgctagag---tttctcgtagaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaagggtgaca 199  Q
     |||||||| |||||||||||| ||||||||   ||||||||||||||||||| ||||||| ||||||||||||||   |||| |||| | || ||||||    
T  10077068 gtacttggtctgcaaactaaaattgctagagtaatttctcgtagaacaccttcaagttcagtggtaaatgaatctgagatggttggtatggagcgtgaca 10077167  T
Q  200 aagagacaataatgaacat 218  Q
    |||||||||||||||||||    
T  10077168 aagagacaataatgaacat 10077186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 8860986 - 8861203
Alignment:
Q  1 tggaacttcctttcttctccttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgtgatagcttgcaactttatgcacagaataaag 100  Q
    |||||||||||||||||||||||||| |  || |||| ||||||||||||||| ||||||||||||||||||||||||||| |||  |||||  ||||||    
T  8860986 tggaacttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagatcatgtgtgatagcttgcaaattttcgcacaacataaag 8861085  T
Q  101 atatacttggtttgcaaactaaaagtgctagagtttctcgtagaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaagggtgacaa 200  Q
    |||| ||||||||||||||||||| || || ||||||||||||||| ||||| |||||||  || |||||||||||| |||| ||||| || | ||| ||    
T  8861086 atatccttggtttgcaaactaaaattggtaaagtttctcgtagaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatgataa 8861185  T
Q  201 agagacaataatgaacat 218  Q
    ||||||| ||||||||||    
T  8861186 agagacagtaatgaacat 8861203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 10580301 - 10580518
Alignment:
Q  1 tggaacttcctttcttctccttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgtgatagcttgcaactttatgcacagaataaag 100  Q
    ||||||||||||||||||||||||||||| || || | ||||||||||||||||||||||||||||||||| | | ||||| | | |||| |  ||||||    
T  10580301 tggaacttcctttcttctccttttaatagcttctatagagagatcaattcccagatgaagatcatgtgtgaaaacctgcaattgtttgcaaatcataaag 10580400  T
Q  101 atatacttggtttgcaaactaaaagtgctagagtttctcgtagaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaagggtgacaa 200  Q
    || | ||||||||||||||||| |||||||||||||||| | |||| ||||| ||||| | | | || ||||||||| ||||||||||||||| ||||||    
T  10580401 atgtccttggtttgcaaactaagagtgctagagtttctcatggaactccttcaagttctgtgtttaacgaatctgtcatggtgggtaggaaggatgacaa 10580500  T
Q  201 agagacaataatgaacat 218  Q
    ||||||||||||||||||    
T  10580501 agagacaataatgaacat 10580518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 11160386 - 11160169
Alignment:
Q  1 tggaacttcctttcttctccttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgtgatagcttgcaactttatgcacagaataaag 100  Q
    |||| ||||||||||||||||||||| |  || || | ||||||||||||||| |||||||||||||||||||||||||||||||  |||||  ||||||    
T  11160386 tggagcttcctttcttctccttttaacaccttctatagagagatcaattcccaaatgaagatcatgtgtgatagcttgcaacttttcgcacaacataaag 11160287  T
Q  101 atatacttggtttgcaaactaaaagtgctagagtttctcgtagaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaagggtgacaa 200  Q
    |||| ||||||||||||| ||||| || || ||||||||||||||| ||||| |||||||  || |||| ||||||| |||| ||||| || | ||| ||    
T  11160286 atatccttggtttgcaaagtaaaattggtaaagtttctcgtagaaccccttcaagttcagtagttaatgcatctgtcatggttggtagaaatgatgataa 11160187  T
Q  201 agagacaataatgaacat 218  Q
    ||||||||||||||||||    
T  11160186 agagacaataatgaacat 11160169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 11149223 - 11149006
Alignment:
Q  1 tggaacttcctttcttctccttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgtgatagcttgcaactttatgcacagaataaag 100  Q
    |||| ||||||||||||||||||||| |   | |||| ||||||||||||||| ||||||| ||||||||| | | ||||| ||| |||||| || ||||    
T  11149223 tggagcttcctttcttctccttttaacaccatctacagagagatcaattcccaaatgaagaccatgtgtgacaacctgcaaatttttgcacaaaacaaag 11149124  T
Q  101 atatacttggtttgcaaactaaaagtgctagagtttctcgtagaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaagggtgacaa 200  Q
    |||| ||||||||||||||||||||||||||| |||  | |||||||||||||||||| | ||| ||||||||  || |||| ||||| |||| ||||||    
T  11149123 atatccttggtttgcaaactaaaagtgctagaattttccatagaacaccttctagttctgtggttaatgaatcattcatggttggtagaaaggatgacaa 11149024  T
Q  201 agagacaataatgaacat 218  Q
    ||||| ||||| ||||||    
T  11149023 agagataataacgaacat 11149006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 11131395 - 11131178
Alignment:
Q  1 tggaacttcctttcttctccttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgtgatagcttgcaactttatgcacagaataaag 100  Q
    |||||||||||||||||||||||||| |   | ||   ||||||||||||||| || |||| ||||||||| | | ||||| ||| |||||| || ||||    
T  11131395 tggaacttcctttcttctccttttaaaaacatctatggagagatcaattcccaaattaagaccatgtgtgacaacctgcaaatttttgcacaaaacaaag 11131296  T
Q  101 atatacttggtttgcaaactaaaagtgctagagtttctcgtagaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaagggtgacaa 200  Q
    |||| |||||||| |||||||||||||||||| |||  | |||||||||||||||||| | ||| ||||||||  || |||| ||||| |||| ||||||    
T  11131295 atatccttggtttacaaactaaaagtgctagaattttccatagaacaccttctagttctgtggttaatgaatcattcatggttggtagaaaggatgacaa 11131196  T
Q  201 agagacaataatgaacat 218  Q
    ||||||||||| ||||||    
T  11131195 agagacaataacgaacat 11131178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 123 - 218
Target Start/End: Original strand, 10126750 - 10126845
Alignment:
Q  123 aagtgctagagtttctcgtagaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaagggtgacaaagagacaataatgaacat 218  Q
    ||||| ||||||||||| ||||   ||||| ||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  10126750 aagtggtagagtttctcatagactgccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacat 10126845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 123 - 218
Target Start/End: Original strand, 10184064 - 10184159
Alignment:
Q  123 aagtgctagagtttctcgtagaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaagggtgacaaagagacaataatgaacat 218  Q
    ||||| ||||||||||| ||||   ||||| ||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  10184064 aagtggtagagtttctcatagactgccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacat 10184159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 123 - 218
Target Start/End: Original strand, 10260520 - 10260615
Alignment:
Q  123 aagtgctagagtttctcgtagaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaagggtgacaaagagacaataatgaacat 218  Q
    ||||| ||||||||||| ||||   ||||| ||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  10260520 aagtggtagagtttctcatagactgccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacat 10260615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 123 - 218
Target Start/End: Original strand, 10663348 - 10663443
Alignment:
Q  123 aagtgctagagtttctcgtagaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaagggtgacaaagagacaataatgaacat 218  Q
    ||||| ||||||||||| ||||   ||||| ||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  10663348 aagtggtagagtttctcatagactgccttcaagttcagtggtaaatgaatctctcatggtgggtaggaagggtgacaaagagacaataatgaacat 10663443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 123 - 218
Target Start/End: Original strand, 10031825 - 10031920
Alignment:
Q  123 aagtgctagagtttctcgtagaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaagggtgacaaagagacaataatgaacat 218  Q
    ||||| ||||||||||| ||||   ||||| ||||||| ||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||    
T  10031825 aagtggtagagtttctcatagactgccttcaagttcagtggtaaatgaatctctcatggtgggtaggaaggatgacaaagagacaataatgaacat 10031920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 10500375 - 10500443
Alignment:
Q  123 aagtgctagagtttctcgtagaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaa 191  Q
    ||||| |||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||    
T  10500375 aagtggtagagtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaa 10500443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 39 - 205
Target Start/End: Original strand, 13332642 - 13332808
Alignment:
Q  39 agagatcaattcccagatgaagatcatgtgtgatagcttgcaactttatgcacagaataaagatatacttggtttgcaaactaaaagtgctagagtttct 138  Q
    |||||||||||| || |||||||| |||||| | ||  ||||||||| ||||||  | | |||||| ||||| |||||||||   || || |||||||||    
T  13332642 agagatcaattcacaaatgaagattatgtgtcaaaggctgcaactttttgcacaacagagagatattcttggcttgcaaactgtgagcgcgagagtttct 13332741  T
Q  139 cgtagaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaagggtgacaaagaga 205  Q
    | |||||| ||||| ||||||  |||||||||||||||  |||| |||||||||| ||| |||||||    
T  13332742 cttagaacgccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataaagaga 13332808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 193
Target Start/End: Original strand, 13160718 - 13160872
Alignment:
Q  39 agagatcaattcccagatgaagatcatgtgtgatagcttgcaactttatgcacagaataaagatatacttggtttgcaaactaaaagtgctagagtttct 138  Q
    |||||||||||| || |||||||| |||||| | ||  ||||||||| ||||||  | | |||||| ||||| |||||||||   || || |||||||||    
T  13160718 agagatcaattcacaaatgaagattatgtgtcaaaggctgcaactttttgcacaacaaagagatatccttggcttgcaaactgtgagcgcgagagtttct 13160817  T
Q  139 cgtagaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaagg 193  Q
    |  ||||| ||||| ||||||  |||||||||||||||  |||| ||||||||||    
T  13160818 ctaagaacgccttcaagttcaatggtaaatgaatctgttatggttggtaggaagg 13160872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 10527157 - 10527225
Alignment:
Q  123 aagtgctagagtttctcgtagaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaa 191  Q
    ||||| |||| ||||||||||||| ||||| ||||||| |||||||||||||||| | |||||||||||    
T  10527157 aagtgatagattttctcgtagaaccccttcaagttcagtggtaaatgaatctgtcattgtgggtaggaa 10527225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 205
Target Start/End: Original strand, 13170769 - 13170935
Alignment:
Q  39 agagatcaattcccagatgaagatcatgtgtgatagcttgcaactttatgcacagaataaagatatacttggtttgcaaactaaaagtgctagagtttct 138  Q
    |||||||||||| || |||||||| |||||| | ||  ||||||||| ||||||  | | |||||| ||||| |||||||||   || |  |||||||||    
T  13170769 agagatcaattcacaaatgaagattatgtgtcaaaggctgcaactttttgcacaacagagagatatccttggcttgcaaactgtgagcgggagagtttct 13170868  T
Q  139 cgtagaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaagggtgacaaagaga 205  Q
    |  ||||| ||||| ||||||  |||||||||||||||  |||| || ||||||| ||| |||||||    
T  13170869 ctaagaacgccttcaagttcaatggtaaatgaatctgttatggttggaaggaaggatgataaagaga 13170935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 205
Target Start/End: Original strand, 13289403 - 13289569
Alignment:
Q  39 agagatcaattcccagatgaagatcatgtgtgatagcttgcaactttatgcacagaataaagatatacttggtttgcaaactaaaagtgctagagtttct 138  Q
    |||||||||||| || |||||||| |||||| | ||  |||| |||| ||||||  | | |||||| ||||| |||||||||   || |  |||||||||    
T  13289403 agagatcaattcacaaatgaagattatgtgtcaaaggctgcagctttttgcacaacagagagatatccttggcttgcaaactgtgagagggagagtttct 13289502  T
Q  139 cgtagaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaagggtgacaaagaga 205  Q
    | |||||| ||||| ||||||  ||||||| |||||||  |||| |||||||||| ||| |||||||    
T  13289503 cttagaacgccttcaagttcaatggtaaataaatctgttatggttggtaggaaggatgataaagaga 13289569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 205
Target Start/End: Original strand, 13343827 - 13343993
Alignment:
Q  39 agagatcaattcccagatgaagatcatgtgtgatagcttgcaactttatgcacagaataaagatatacttggtttgcaaactaaaagtgctagagtttct 138  Q
    |||||||||||| || |||||||| |||||| | ||  ||||  ||| ||||||  | | |||||| ||||| |||||||||   || |  |||||||||    
T  13343827 agagatcaattcacaaatgaagattatgtgtcaaaggctgcagatttttgcacaacagagagatatccttggcttgcaaactgtgagcgggagagtttct 13343926  T
Q  139 cgtagaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaagggtgacaaagaga 205  Q
    |  ||||||||||| ||||||  |||||||||||||||  |||| |||||||||| ||| |||||||    
T  13343927 ctaagaacaccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataaagaga 13343993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 191
Target Start/End: Complemental strand, 11782245 - 11782185
Alignment:
Q  131 gagtttctcgtagaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaa 191  Q
    ||||||||  |||||| ||||| ||||||| | ||||| |||||| |||||||||||||||    
T  11782245 gagtttcttctagaaccccttcaagttcagtgctaaatcaatctgacgtggtgggtaggaa 11782185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 3 - 215
Target Start/End: Original strand, 26906599 - 26906811
Alignment:
Q  3 gaacttcctttcttctccttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgtgatagcttgcaactttatgcacagaataaagat 102  Q
    |||||||||||| |||||||||||||| || |||| |||||||||||| || |||||||| |||||||| ||| ||||| | | ||||||  ||||||||    
T  26906599 gaacttcctttcatctccttttaatagcttctacagagagatcaattctcaaatgaagataatgtgtgaaagcctgcaattgtttgcacaacataaagat 26906698  T
Q  103 atacttggtttgcaaactaaaagtgctagagtttctcgtagaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaagggtgacaaag 202  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||| ||||||||    
T  26906699 atccttggtttgcaaactaaaagtgctagagtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaag 26906798  T
Q  203 agacaataatgaa 215  Q
    |||||||||||||    
T  26906799 agacaataatgaa 26906811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 39 - 193
Target Start/End: Complemental strand, 50139 - 49985
Alignment:
Q  39 agagatcaattcccagatgaagatcatgtgtgatagcttgcaactttatgcacagaataaagatatacttggtttgcaaactaaaagtgctagagtttct 138  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||| || | | |  |||||||||||| ||||||||||||||||  | || |||||     
T  50139 agagatcaattcccagatgaagatcatgtgtgaaagcctgcaactttttgaaaaaagaaaagatatacttcgtttgcaaactaaaagcacaagggtttca 50040  T
Q  139 cgtagaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaagg 193  Q
    |||||||||||||| ||||||| |||||||||||||||| |||||||||||||||    
T  50039 cgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaagg 49985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 44958078 - 44957888
Alignment:
Q  1 tggaacttcctttcttctccttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgtgatagcttgcaactttatgcacagaataaag 100  Q
    |||||||||||||| ||||||||||| |  || ||   |||||||||||| || |||||||| ||||||||   | ||||||||| ||||||| ||||||    
T  44958078 tggaacttcctttcatctccttttaaaaacttctatggagagatcaattctcaaatgaagattatgtgtgaatccctgcaactttttgcacagcataaag 44957979  T
Q  101 atatacttggtttgcaaactaaaagtgctagagtttctcgtagaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaa 191  Q
    ||||| |||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||| |  ||||||| |||||    
T  44957978 atataattggtttggaaactaaaagtgctagagtttctcatagaacaccttcaagttcaggggttaatgaatctattatggtgggcaggaa 44957888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 191
Target Start/End: Original strand, 11484842 - 11484904
Alignment:
Q  129 tagagtttctcgtagaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaa 191  Q
    ||||||||||||||||||||| || ||||||| ||| |||||||||||  ||||||| |||||    
T  11484842 tagagtttctcgtagaacaccatcaagttcagtggtgaatgaatctgttatggtgggaaggaa 11484904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 205
Target Start/End: Complemental strand, 146270 - 146104
Alignment:
Q  39 agagatcaattcccagatgaagatcatgtgtgatagcttgcaactttatgcacagaataaagatatacttggtttgcaaactaaaagtgctagagtttct 138  Q
    |||||||||||| || |||||||| |||||| | ||  ||||||||| ||||||  | | |||||| ||||| |||||||||   || |  |||||||||    
T  146270 agagatcaattcacaaatgaagattatgtgtcaaaggctgcaactttttgcacaacagagagatatccttggcttgcaaactgtgagcgggagagtttct 146171  T
Q  139 cgtagaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaagggtgacaaagaga 205  Q
    |  ||||| ||||| ||||||  |||||||||||||||  |||| |||||||||| ||| |||||||    
T  146170 ctaagaacgccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataaagaga 146104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 205
Target Start/End: Complemental strand, 136219 - 136053
Alignment:
Q  39 agagatcaattcccagatgaagatcatgtgtgatagcttgcaactttatgcacagaataaagatatacttggtttgcaaactaaaagtgctagagtttct 138  Q
    |||||||||||| || |||||||| |||||| | ||  ||||||||| ||||||  | | |||||| ||||| |||||||||   || |  |||||||||    
T  136219 agagatcaattcacaaatgaagattatgtgtcaaaggctgcaactttttgcacaacagagagatatccttggcttgcaaactgtgagcgggagagtttct 136120  T
Q  139 cgtagaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaagggtgacaaagaga 205  Q
    |  ||||| ||||| ||||||  |||||||||||||||  |||| || ||||||| ||| |||||||    
T  136119 ctaagaacgccttcaagttcaatggtaaatgaatctgttatggttggaaggaaggatgataaagaga 136053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 205
Target Start/End: Complemental strand, 31680064 - 31679898
Alignment:
Q  39 agagatcaattcccagatgaagatcatgtgtgatagcttgcaactttatgcacagaataaagatatacttggtttgcaaactaaaagtgctagagtttct 138  Q
    ||||||||||||||| |||||||  |||  ||| ||  | ||||||| ||||||  | |||||||| ||||| |||||||||  ||||| ||| |||| |    
T  31680064 agagatcaattcccaaatgaagagtatgattgaaaggctccaactttttgcacaacaaaaagatatccttgggttgcaaactgtaagtggtagggttttt 31679965  T
Q  139 cgtagaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaagggtgacaaagaga 205  Q
    | |||||||||||| ||||||   ||| || ||||| || |||| ||||||||| |||| |||||||    
T  31679964 cttagaacaccttcaagttcactagtagatcaatctttcatggttggtaggaagagtgataaagaga 31679898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 17853194 - 17853126
Alignment:
Q  123 aagtgctagagtttctcgtagaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaa 191  Q
    ||||| |||||||||||||||||| ||||| ||||| | |||||||||||||||| |||| || |||||    
T  17853194 aagtggtagagtttctcgtagaaccccttcaagttccgtggtaaatgaatctgtcatggtaggaaggaa 17853126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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