View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7755_low_4 (Length: 632)
Name: NF7755_low_4
Description: NF7755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7755_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 10 - 610
Target Start/End: Complemental strand, 25794652 - 25794053
Alignment:
| Q |
10 |
cacacacgcacgcgcacgcaccaaacacctctctcgcaccctgtgtttttccaaaaaatgcctctcgattttcggattttagaatccgtcaagggaaaaa |
109 |
Q |
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| T |
25794652 |
cacacatgcgcgcgcacgcaccaaaaacctctctcgcaccctgtgtttttccaaaaaatgcctctcgattttcggattttagaatccgtcaagggaaaaa |
25794553 |
T |
|
| Q |
110 |
tttagccacggtatctgttttttcagaatctttacacatttgaaatctggaatccgaacacccctcttgatattgtctttgtttnnnnnnnttatgatca |
209 |
Q |
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| T |
25794552 |
attagccacggtatctgttttttcagaatctttacacatttgaaatctggaatccgaacacccctcttgatattgtctttgtttaaaaaaattatgatca |
25794453 |
T |
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| Q |
210 |
tatggtcaagatggggagcaaaaagggagtgttggtccttattttgtaaattttttgtatcagctcttatattatagccaatcaaagagatttctgactc |
309 |
Q |
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| T |
25794452 |
tatggtcaagatggggagcaaaaagggagtgttggtccttattttgtaaattttt-gtatcagctcttatattatagccaatcaaagagatttctgactc |
25794354 |
T |
|
| Q |
310 |
attgagaatttacaacagaatttacagataacctaccaagtatggaattttggactcaaacctaagttgtaatccgtatgagaggaaagtcttaccatgt |
409 |
Q |
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| T |
25794353 |
attgagaatttacaacagaatttacagataacctaccaagtatggaattttggactcaaacccaagttgtaatccgtatgagaggaaagtcttaccatgt |
25794254 |
T |
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| Q |
410 |
gtgccaaccacagttggccaacaacttccatttcttataaatgtcgtataatgaacaaaagaaactttcagcaataatattctggaccatatgagtgttt |
509 |
Q |
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| T |
25794253 |
gtgccaaccacagttggccaacaacttccatttcttataaatgttgtataatgaacaaaagaaattttcagcaataatattctggaccatatgagtgttt |
25794154 |
T |
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| Q |
510 |
acttacatatatgaattgagaatattacaatgctagtatattctaatcttgcttatgcaaattatgaaggatatacaaagatgcagatgataagaaaata |
609 |
Q |
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| T |
25794153 |
acttacatatatgaattgagaatattacaatgctagtatattctaatcttgcttatgcagattatgaaggatatacaaagatgcagatgataagaaaata |
25794054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 7e-23; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 485 - 587
Target Start/End: Complemental strand, 10093743 - 10093640
Alignment:
| Q |
485 |
aatattctggaccatatgagtgtttacttacatatatgaattgagaatattacaatg-ctagtatattctaatcttgcttatgcaaattatgaaggatat |
583 |
Q |
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| T |
10093743 |
aatattttgggccatatgagtgttcacttacatatatgaattgagaatattacaatgcctgctgcattctactcttgcttatgcaaattaagaaggattt |
10093644 |
T |
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| Q |
584 |
acaa |
587 |
Q |
| |
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|||| |
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| T |
10093643 |
acaa |
10093640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 485 - 587
Target Start/End: Complemental strand, 10200625 - 10200522
Alignment:
| Q |
485 |
aatattctggaccatatgagtgtttacttacatatatgaattgagaatattacaatg-ctagtatattctaatcttgcttatgcaaattatgaaggatat |
583 |
Q |
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| T |
10200625 |
aatattttgggccatatgagtgttcacttacatatatgaattgagaatattacaatgcctgctgcattctactcttgcttatgcaaattaagaaggattt |
10200526 |
T |
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| Q |
584 |
acaa |
587 |
Q |
| |
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|||| |
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| T |
10200525 |
acaa |
10200522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 518 - 610
Target Start/End: Original strand, 10440829 - 10440922
Alignment:
| Q |
518 |
atatgaattgagaatattacaatgc-tagtatattctaatcttgcttatgcaaattatgaaggatatacaaagatgcagatgataagaaaatac |
610 |
Q |
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| T |
10440829 |
atatgatttgagaatattacaatgcctagtacactctaattttgcttgtgcaaattatgtaggatatacaatgatgccgatgataagaaaatac |
10440922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 503 - 610
Target Start/End: Original strand, 10377491 - 10377601
Alignment:
| Q |
503 |
agtgtttacttacatatatgaattgagaatattacaatgct-agtatattctaatcttgcttatgcaaattatgaaggatatacaaagatg--cagatga |
599 |
Q |
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|||||| ||||||| |||||| ||||||||||||||||| | |||| | ||||||||||||| ||||||||||| ||||||||||| |||| | |||| |
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| T |
10377491 |
agtgttcacttacagatatgatttgagaatattacaatgtttagtacactctaatcttgcttgtgcaaattatgtaggatatacaatgatgtcgatatga |
10377590 |
T |
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| Q |
600 |
taagaaaatac |
610 |
Q |
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||||||||||| |
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| T |
10377591 |
taagaaaatac |
10377601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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