View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7755_low_8 (Length: 473)
Name: NF7755_low_8
Description: NF7755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7755_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 6 - 406
Target Start/End: Complemental strand, 12095797 - 12095399
Alignment:
| Q |
6 |
gtcttacggttggaaaataacatgatatacggaaagttgccagcttggttaggccaagcgtcattgttgtacgacttcaatgtgagctacaaccagcttt |
105 |
Q |
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| T |
12095797 |
gtcttacggttggaaaataacatgatatacggaaagttgccagcttggttaggccaagcgtcattgttgtacgacttcaatgtgagctacaaccagcttt |
12095698 |
T |
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| Q |
106 |
ccggtcctataccgacagttggagggaagttgcaagagtttgatccatcgtcattttcgcataataagggcttgtgtggttctcctttgcctccttgtaa |
205 |
Q |
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| T |
12095697 |
tcggtcctataccgacagttggagggaagttgcaagagtttgatccatcgtcgttttcgcataataagggcttgtgtggttctcctttgcctccttgtaa |
12095598 |
T |
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| Q |
206 |
gcagggccgtcccggctccatagagctcttagcgcttgctcaagaacgggcctccttgtaagtgagtaattagtactcactcggttacacatttatcggc |
305 |
Q |
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| T |
12095597 |
gcagggccgtcccggctccatagagctcttcgcacttgctcaagaaagggcctccttgtaagtga--aattagtactcaatcggttacacatttatcggc |
12095500 |
T |
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| Q |
306 |
ctcatataacatggggcatttataagaaaatgtgttaaaataatagtaataatgttgggggtgtggaactcnnnnnnngagtaagggtagtatgagattc |
405 |
Q |
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| T |
12095499 |
ctcatataacatggggcatttataagaaaatgtgttaaaataatagtaataatgttgggggtgtggaactcttttttagagtaagggtggtatgagattc |
12095400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 4 - 206
Target Start/End: Complemental strand, 12079159 - 12078957
Alignment:
| Q |
4 |
tggtcttacggttggaaaataacatgatatacggaaagttgccagcttggttaggccaagcgtcattgttgtacgacttcaatgtgagctacaaccagct |
103 |
Q |
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| T |
12079159 |
tggtcttgcggttggaaaataaccttatatatggaaagttgccagcttggttaggccaagcgtcattgttgtatgacttcaatgtgagcaacaaccaact |
12079060 |
T |
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| Q |
104 |
ttccggtcctataccgacagttggagggaagttgcaagagtttgatccatcgtcattttcgcataataagggcttgtgtggttctcctttgcctccttgt |
203 |
Q |
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| T |
12079059 |
ttgtggtcctataccgacagtcggagggaagttgcaagggtttgatccatcgtcgttttcgcataataagtgtttgtgtggttctcctttgcccccttgt |
12078960 |
T |
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| Q |
204 |
aag |
206 |
Q |
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||| |
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| T |
12078959 |
aag |
12078957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 259 - 346
Target Start/End: Complemental strand, 12078965 - 12078878
Alignment:
| Q |
259 |
ccttgtaagtgagtaattagtactcactcggttacacatttatcggcctcatataacatggggcatttataagaaaatgtgttaaaat |
346 |
Q |
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| T |
12078965 |
ccttgtaagtgagtaattagtactctctcggttacacatttatcagcctcatttgacatgggtcatttgtaagaaaatgtgttaaaat |
12078878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 85 - 156
Target Start/End: Original strand, 1249176 - 1249247
Alignment:
| Q |
85 |
atgtgagctacaaccagctttccggtcctataccgacagttggagggaagttgcaagagtttgatccatcgt |
156 |
Q |
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| T |
1249176 |
atgtgagccacaaccagctttgtggtcctataccaaaggatggagggaagttgcaagggtttgatccgtcgt |
1249247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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