View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7756_high_3 (Length: 230)

Name: NF7756_high_3
Description: NF7756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7756_high_3
NF7756_high_3
[»] chr5 (23 HSPs)
chr5 (25-162)||(1349671-1349805)
chr5 (25-162)||(19134775-19134906)
chr5 (25-86)||(35039748-35039809)
chr5 (25-158)||(19135031-19135160)
chr5 (25-114)||(35040394-35040484)
chr5 (25-98)||(4727860-4727934)
chr5 (27-113)||(5249367-5249453)
chr5 (25-98)||(5246529-5246602)
chr5 (25-98)||(35041000-35041073)
chr5 (27-98)||(35781386-35781457)
chr5 (43-162)||(43583006-43583114)
chr5 (25-114)||(6429477-6429567)
chr5 (25-162)||(40591330-40591458)
chr5 (25-85)||(28794017-28794077)
chr5 (25-113)||(34383394-34383482)
chr5 (124-162)||(17367517-17367555)
chr5 (51-162)||(25458472-25458577)
chr5 (25-83)||(38184307-38184364)
chr5 (25-83)||(38213993-38214050)
chr5 (25-70)||(18585695-18585740)
chr5 (53-113)||(12545876-12545936)
chr5 (25-113)||(38494512-38494602)
chr5 (25-85)||(35040170-35040230)
[»] chr3 (35 HSPs)
chr3 (25-162)||(54981903-54982034)
chr3 (25-114)||(54356285-54356374)
chr3 (25-162)||(8708034-8708166)
chr3 (25-162)||(9059921-9060053)
chr3 (25-164)||(21388358-21388491)
chr3 (24-162)||(7433541-7433672)
chr3 (25-114)||(12101077-12101166)
chr3 (25-162)||(3942515-3942649)
chr3 (25-98)||(10333117-10333190)
chr3 (25-114)||(44077782-44077873)
chr3 (25-162)||(47567576-47567708)
chr3 (27-162)||(54143011-54143140)
chr3 (25-162)||(11633080-11633209)
chr3 (56-158)||(23027534-23027630)
chr3 (37-99)||(21459642-21459704)
chr3 (25-114)||(10332667-10332755)
chr3 (25-162)||(24842422-24842552)
chr3 (53-162)||(34794410-34794513)
chr3 (51-162)||(46515067-46515173)
chr3 (25-112)||(10297191-10297279)
chr3 (25-162)||(30498379-30498509)
chr3 (28-98)||(40285041-40285111)
chr3 (32-98)||(53877664-53877730)
chr3 (25-98)||(54981604-54981677)
chr3 (25-84)||(24485606-24485665)
chr3 (25-84)||(33832814-33832873)
chr3 (52-114)||(45586143-45586205)
chr3 (25-98)||(10297429-10297502)
chr3 (25-85)||(26167898-26167961)
chr3 (54-98)||(10317043-10317087)
chr3 (25-80)||(47567774-47567829)
chr3 (124-162)||(10334295-10334333)
chr3 (25-85)||(42583609-42583670)
chr3 (25-113)||(2788434-2788522)
chr3 (1-29)||(51415963-51415991)
[»] scaffold0016 (2 HSPs)
scaffold0016 (25-162)||(106019-106149)
scaffold0016 (25-162)||(205261-205391)
[»] chr4 (32 HSPs)
chr4 (25-162)||(54175850-54175981)
chr4 (25-162)||(7238838-7238968)
chr4 (25-158)||(41692449-41692576)
chr4 (25-162)||(19298461-19298595)
chr4 (28-162)||(44886190-44886319)
chr4 (46-115)||(41104035-41104104)
chr4 (25-114)||(49897342-49897431)
chr4 (25-111)||(50715691-50715778)
chr4 (25-162)||(11125977-11126108)
chr4 (25-114)||(12928566-12928656)
chr4 (28-114)||(39136045-39136131)
chr4 (25-79)||(54806864-54806918)
chr4 (25-98)||(2494082-2494155)
chr4 (25-114)||(4780642-4780731)
chr4 (51-162)||(6046362-6046469)
chr4 (25-82)||(53130875-53130932)
chr4 (25-112)||(29100838-29100928)
chr4 (25-113)||(36889662-36889750)
chr4 (25-84)||(11125268-11125327)
chr4 (51-98)||(33802977-33803024)
chr4 (25-98)||(660184-660256)
chr4 (51-148)||(9519061-9519151)
chr4 (25-105)||(29618255-29618335)
chr4 (53-161)||(43495876-43495978)
chr4 (46-95)||(29993417-29993466)
chr4 (25-79)||(27838986-27839041)
chr4 (51-82)||(42882083-42882114)
chr4 (32-82)||(40956925-40956975)
chr4 (52-112)||(7770217-7770278)
chr4 (53-98)||(13222225-13222270)
chr4 (45-98)||(24739044-24739097)
chr4 (25-113)||(5028964-5029052)
[»] chr1 (38 HSPs)
chr1 (25-162)||(43325903-43326034)
chr1 (25-162)||(49243793-49243924)
chr1 (25-158)||(17054241-17054368)
chr1 (44-162)||(24705397-24705509)
chr1 (25-162)||(6844477-6844608)
chr1 (28-162)||(47795005-47795131)
chr1 (35-114)||(42834931-42835010)
chr1 (25-145)||(43114759-43114877)
chr1 (25-112)||(47795424-47795511)
chr1 (25-162)||(24686207-24686337)
chr1 (43-162)||(39842797-39842911)
chr1 (25-161)||(47796302-47796434)
chr1 (25-98)||(6318923-6318996)
chr1 (25-162)||(11981727-11981856)
chr1 (25-114)||(47795950-47796039)
chr1 (25-156)||(43114911-43115036)
chr1 (25-112)||(48738509-48738596)
chr1 (29-98)||(33674998-33675067)
chr1 (43-96)||(47794817-47794870)
chr1 (54-162)||(6941401-6941503)
chr1 (60-162)||(11981163-11981259)
chr1 (43-162)||(33241111-33241224)
chr1 (29-96)||(40793031-40793098)
chr1 (51-98)||(45296774-45296821)
chr1 (51-162)||(8795322-8795428)
chr1 (43-162)||(47793071-47793185)
chr1 (25-162)||(49480187-49480318)
chr1 (43-162)||(45378370-45378484)
chr1 (43-162)||(12016876-12016989)
chr1 (52-98)||(10066475-10066521)
chr1 (124-162)||(21447445-21447483)
chr1 (25-161)||(42429608-42429740)
chr1 (53-162)||(52404117-52404219)
chr1 (51-103)||(10105981-10106033)
chr1 (25-96)||(42834615-42834687)
chr1 (124-162)||(10338233-10338271)
chr1 (25-98)||(45807995-45808069)
chr1 (53-94)||(26271976-26272017)
[»] chr7 (36 HSPs)
chr7 (81-165)||(46898193-46898277)
chr7 (25-85)||(46897955-46898015)
chr7 (25-155)||(30121871-30121995)
chr7 (25-98)||(47222543-47222617)
chr7 (25-113)||(30121286-30121374)
chr7 (25-162)||(35526492-35526626)
chr7 (25-95)||(40261924-40261994)
chr7 (25-162)||(5800989-5801122)
chr7 (25-112)||(14312450-14312537)
chr7 (25-96)||(38319959-38320030)
chr7 (25-162)||(26246573-26246705)
chr7 (25-115)||(35223801-35223890)
chr7 (25-98)||(21696487-21696559)
chr7 (25-162)||(24162116-24162252)
chr7 (37-114)||(24688776-24688853)
chr7 (30-162)||(26970742-26970867)
chr7 (25-112)||(26970406-26970493)
chr7 (25-113)||(10283290-10283378)
chr7 (25-97)||(24689354-24689428)
chr7 (29-98)||(23640761-23640830)
chr7 (25-82)||(26175462-26175519)
chr7 (28-113)||(33857986-33858071)
chr7 (32-161)||(21696741-21696863)
chr7 (29-112)||(23808924-23809007)
chr7 (124-162)||(10282006-10282044)
chr7 (51-157)||(11486412-11486512)
chr7 (52-96)||(4594478-4594522)
chr7 (54-114)||(35525952-35526012)
chr7 (28-82)||(26151189-26151243)
chr7 (37-111)||(29854704-29854778)
chr7 (25-82)||(10282501-10282558)
chr7 (24-81)||(37986005-37986062)
chr7 (50-82)||(1644573-1644605)
chr7 (28-96)||(11750058-11750126)
chr7 (54-82)||(24689146-24689174)
chr7 (25-112)||(45447567-45447657)
[»] chr2 (25 HSPs)
chr2 (25-162)||(42676481-42676613)
chr2 (25-162)||(30668860-30668991)
chr2 (25-162)||(21479422-21479552)
chr2 (25-162)||(39844156-39844289)
chr2 (25-112)||(40662740-40662827)
chr2 (25-158)||(14787217-14787344)
chr2 (25-162)||(30666277-30666408)
chr2 (29-98)||(43968563-43968632)
chr2 (25-162)||(30620569-30620699)
chr2 (25-162)||(30623190-30623320)
chr2 (25-114)||(15458962-15459051)
chr2 (25-98)||(30632219-30632292)
chr2 (25-85)||(7495600-7495660)
chr2 (52-105)||(43004941-43004994)
chr2 (32-158)||(20612717-20612836)
chr2 (25-84)||(43968226-43968285)
chr2 (53-162)||(3256148-3256251)
chr2 (25-94)||(36950336-36950405)
chr2 (25-96)||(7074897-7074968)
chr2 (25-115)||(1826772-1826862)
chr2 (25-98)||(9420273-9420347)
chr2 (25-75)||(21479225-21479275)
chr2 (25-82)||(3197007-3197064)
chr2 (51-98)||(45654973-45655020)
chr2 (53-97)||(31667564-31667608)
[»] chr8 (36 HSPs)
chr8 (25-161)||(1030396-1030528)
chr8 (25-162)||(35308082-35308215)
chr8 (25-94)||(13916548-13916617)
chr8 (25-162)||(5765311-5765448)
chr8 (25-113)||(6007687-6007775)
chr8 (25-113)||(27963970-27964058)
chr8 (25-98)||(27881328-27881401)
chr8 (25-98)||(27917551-27917624)
chr8 (25-98)||(28021509-28021582)
chr8 (25-98)||(40737441-40737514)
chr8 (25-112)||(5424786-5424874)
chr8 (25-112)||(5424478-5424565)
chr8 (25-115)||(17575213-17575304)
chr8 (25-84)||(27964830-27964889)
chr8 (53-158)||(1153646-1153744)
chr8 (25-162)||(17073302-17073433)
chr8 (25-162)||(17574837-17574968)
chr8 (25-82)||(342700-342757)
chr8 (25-115)||(40796166-40796258)
chr8 (25-112)||(17072969-17073057)
chr8 (25-112)||(5764896-5764983)
chr8 (51-113)||(8377046-8377108)
chr8 (25-98)||(15199745-15199818)
chr8 (28-97)||(28152484-28152553)
chr8 (25-95)||(28828037-28828109)
chr8 (43-82)||(1580312-1580351)
chr8 (25-84)||(27882195-27882254)
chr8 (25-84)||(28022375-28022434)
chr8 (25-162)||(27882395-27882527)
chr8 (25-162)||(28022575-28022707)
chr8 (25-113)||(32693537-32693625)
chr8 (124-162)||(27965031-27965069)
chr8 (25-78)||(6008044-6008097)
chr8 (44-81)||(24981542-24981579)
chr8 (53-82)||(32855173-32855202)
chr8 (1-30)||(36804094-36804123)
[»] chr6 (12 HSPs)
chr6 (25-112)||(21980923-21981010)
chr6 (25-114)||(2258689-2258778)
chr6 (50-162)||(26209163-26209269)
chr6 (28-147)||(7204759-7204872)
chr6 (61-115)||(7858507-7858561)
chr6 (37-161)||(9740531-9740646)
chr6 (25-94)||(10780177-10780246)
chr6 (25-98)||(33438680-33438752)
chr6 (54-162)||(3306922-3307024)
chr6 (28-94)||(26001257-26001323)
chr6 (53-98)||(5679070-5679115)
chr6 (46-82)||(32952541-32952577)
[»] scaffold0224 (2 HSPs)
scaffold0224 (35-114)||(22012-22091)
scaffold0224 (25-96)||(21696-21768)
[»] scaffold0024 (1 HSPs)
scaffold0024 (25-162)||(150138-150268)
[»] scaffold0376 (1 HSPs)
scaffold0376 (50-85)||(1955-1990)
[»] scaffold0267 (1 HSPs)
scaffold0267 (25-112)||(3246-3337)


Alignment Details
Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 25 - 162
Target Start/End: Original strand, 1349671 - 1349805
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatact 124  Q
    ||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||  ||||||||||| | ||||| |||||| | ||||   |    
T  1349671 ttgtttggatacaactatataaaagggattttttgttacaaaattagttcaatcttttaaatcatattttctctctcctctaaaaaaaaaaatcta---t 1349767  T
Q  125 tttttgagaagctactcttaacagtttctcatttgaag 162  Q
    ||||||||||||| |||||||||| |||||||||||||    
T  1349768 tttttgagaagctgctcttaacagcttctcatttgaag 1349805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 25 - 162
Target Start/End: Original strand, 19134775 - 19134906
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatact 124  Q
    ||||||||||| || || |||||| ||||||||||||||||||||||||||||||||||||  ||||||||||| | ||||||||||||   ||||   |    
T  19134775 ttgtttggatacaattatataaaagggattttttgttacaaaattagttcaatcttttaaacaatattttctctctcctctacaaaaaa---tcta---t 19134868  T
Q  125 tttttgagaagctactcttaacagtttctcatttgaag 162  Q
    ||||||||||||| |||||||||| |||||||||||||    
T  19134869 tttttgagaagctgctcttaacagcttctcatttgaag 19134906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 35039809 - 35039748
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaa 86  Q
    ||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  35039809 ttgtttggatacaactatataaaagggattttttgttacaaaattagttcaatcttttaaaa 35039748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 158
Target Start/End: Original strand, 19135031 - 19135160
Alignment:
Q  25 ttgtttggatataactagataaaaaggatttt--ttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctata 122  Q
    ||||||||||| ||||| ||||||  ||||||  |||||||||||||||||||||||||||||  ||||||||||| | ||||| ||||||   ||||      
T  19135031 ttgtttggatacaactatataaaagagattttttttgttacaaaattagttcaatcttttaaaccatattttctctctcctctataaaaaa---tcta-- 19135125  T
Q  123 cttttttgagaagctactcttaacagtttctcattt 158  Q
     ||||||||||||||  ||||||||| |||||||||    
T  19135126 -ttttttgagaagctgttcttaacagcttctcattt 19135160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 114
Target Start/End: Complemental strand, 35040484 - 35040394
Alignment:
Q  25 ttgtttggatataactagataaaaagga-ttttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaat 114  Q
    ||||||||||| ||||| |||||| ||| |||||||||||||||||||||||||||||||||  ||||||||||  | ||||| |||||||    
T  35040484 ttgtttggatacaactatataaaagggaattttttgttacaaaattagttcaatcttttaaatcatattttctccctcctctaaaaaaaat 35040394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 4727934 - 4727860
Alignment:
Q  25 ttgtttggatataactagataaaaaggattt-tttgttacaaaattagttcaatcttttaaaatatattttctct 98  Q
    ||||||| ||| ||||| |||||| |||||| |||||||||||||||||||| ||||||||| ||||||||||||    
T  4727934 ttgtttgaatacaactatataaaagggatttgtttgttacaaaattagttcattcttttaaattatattttctct 4727860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 5249367 - 5249453
Alignment:
Q  27 gtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaa 113  Q
    ||||| ||| ||||| |||||| |||||||||||| |||||||||||||||||||||||  ||||||| ||| | ||||| ||||||    
T  5249367 gtttgaatacaactatataaaagggattttttgttgcaaaattagttcaatcttttaaatcatattttttctctactctaaaaaaaa 5249453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 5246529 - 5246602
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctct 98  Q
    ||||||||||| ||||| ||||||  |||||||| ||||||||||||||||||||||||||   ||||||||||    
T  5246529 ttgtttggatacaactatataaaagagatttttttttacaaaattagttcaatcttttaaaccttattttctct 5246602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 35041000 - 35041073
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctct 98  Q
    ||||| ||||| ||||| |||||   |||||| ||||||||||||||||||||||||||||| |||||||||||    
T  35041000 ttgttaggatacaactatataaatgagattttatgttacaaaattagttcaatcttttaaaaaatattttctct 35041073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 35781386 - 35781457
Alignment:
Q  27 gtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctct 98  Q
    ||||||||| ||||| ||||||   |||||||||||||||||||||| |||||||||||  |||||||||||    
T  35781386 gtttggatacaactatataaaatatattttttgttacaaaattagtttaatcttttaaatcatattttctct 35781457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 43 - 162
Target Start/End: Original strand, 43583006 - 43583114
Alignment:
Q  43 ataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatacttttttgagaagctactct 142  Q
    |||||| ||||||||||||||||||||||||||||||||| ||  ||||||||||    ||||| |||||    ||||||   |||||||||| |||||     
T  43583006 ataaaagggattttttgttacaaaattagttcaatcttttgaatcatattttctc----ctctaaaaaaa----tctata---ttttgagaagttactca 43583094  T
Q  143 taacagtttctcatttgaag 162  Q
    ||||| ||||||||||||||    
T  43583095 taacaatttctcatttgaag 43583114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 114
Target Start/End: Complemental strand, 6429567 - 6429477
Alignment:
Q  25 ttgtttggatataactagataaaaaggat-tttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaat 114  Q
    ||||| ||||| ||||| ||||||| ||| ||||||||||||||||||||||||||||| |   ||||||||||| | ||||| |||||||    
T  6429567 ttgttaggatacaactatataaaaacgatatttttgttacaaaattagttcaatcttttgatccatattttctctctcctctaaaaaaaat 6429477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 162
Target Start/End: Original strand, 40591330 - 40591458
Alignment:
Q  25 ttgtttggatataactagataaaaaggatttt-ttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatac 123  Q
    ||||||||||| |||||  ||||| ||||||| |||||||||||||||| |||| |||||||  |||||||||||   ||||| |||||||       |     
T  40591330 ttgtttggatacaactat-taaaagggatttttttgttacaaaattagtacaattttttaaaccatattttctct---ctctaaaaaaaat------caa 40591419  T
Q  124 ttttttgagaagctactcttaacagtttctcatttgaag 162  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  40591420 ttttttgagaagctgctcttaacagcttctcatttgaag 40591458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 28794017 - 28794077
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaa 85  Q
    ||||||||||| ||||| |||||  |||||||| |||||||||||| ||||||||||||||    
T  28794017 ttgtttggatacaactatataaacgggatttttcgttacaaaattatttcaatcttttaaa 28794077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 113
Target Start/End: Original strand, 34383394 - 34383482
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaa 113  Q
    ||||||||||| ||||| |||||| |||| |||||||||||||| | |||||||||||||    |||||||||| | ||||| ||||||    
T  34383394 ttgtttggatacaactatataaaagggatattttgttacaaaatcaattcaatcttttaagccttattttctctctcctctaaaaaaaa 34383482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 124 - 162
Target Start/End: Complemental strand, 17367555 - 17367517
Alignment:
Q  124 ttttttgagaagctactcttaacagtttctcatttgaag 162  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  17367555 ttttttgagaagctactcttaacagcttctcatttgaag 17367517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 162
Target Start/End: Complemental strand, 25458577 - 25458472
Alignment:
Q  51 gattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatacttttttgagaagctactcttaacagtt 150  Q
    |||||||||||||||||||||||||||||||| |   ||||||||||| | ||||  |||||||| ||||   |||||| |||||||||  ||||||  |    
T  25458577 gattttttgttacaaaattagttcaatcttttgatccatattttctctctcctct--aaaaaata-tcta---tttttttagaagctaccattaacaact 25458484  T
Q  151 tctcatttgaag 162  Q
    ||||||||||||    
T  25458483 tctcatttgaag 25458472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 38184307 - 38184364
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatctttta 83  Q
    |||||||| || ||||| |||||| ||||||||||||||||||||| ||||||||||||    
T  38184307 ttgtttgggtacaactatataaaa-ggattttttgttacaaaattacttcaatctttta 38184364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 38214050 - 38213993
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatctttta 83  Q
    |||||||| || ||||| |||||| ||||||||||||||||||||| ||||||||||||    
T  38214050 ttgtttgggtacaactatataaaa-ggattttttgttacaaaattacttcaatctttta 38213993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 18585695 - 18585740
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaatta 70  Q
    ||||||||||| ||||| ||||||| ||||||||||||||||||||    
T  18585695 ttgtttggatacaactatataaaaacgattttttgttacaaaatta 18585740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 12545936 - 12545876
Alignment:
Q  53 ttttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaa 113  Q
    |||||| ||||||| |||||||||| ||||||| |||||||||||| | ||||| ||||||    
T  12545936 ttttttattacaaatttagttcaatattttaaattatattttctctctcctctaaaaaaaa 12545876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 113
Target Start/End: Original strand, 38494512 - 38494602
Alignment:
Q  25 ttgtttggatataactagataaaaaggatttt-ttgttacaaaattagttcaatcttttaaaatat-attttctctttgctctacaaaaaa 113  Q
    ||||||||||| | ||| |||||| ||||||| ||||||||||| ||||| |||||||| | || | ||||||||||| ||||| ||||||    
T  38494512 ttgtttggatacatctatataaaagggatttttttgttacaaaactagtttaatcttttgacatttaattttctcttttctctaaaaaaaa 38494602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 35040170 - 35040230
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaa 85  Q
    ||||||||||  ||| | |||||| | ||||||||||||||| |||||||||| |||||||    
T  35040170 ttgtttggattcaaccatataaaaggaattttttgttacaaatttagttcaatattttaaa 35040230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 25 - 162
Target Start/End: Original strand, 54981903 - 54982034
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatact 124  Q
    |||||| |||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||      |  |    
T  54981903 ttgttttgatacaactatataaaacggattttttgttacaaaattagttcaatcttttaaaatatattttctctctcctctaaaaaaaat------ttat 54981996  T
Q  125 tttttgagaagctactcttaacagtttctcatttgaag 162  Q
    ||||||||||||| |||||||||| |||||||||||||    
T  54981997 tttttgagaagctgctcttaacagcttctcatttgaag 54982034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 25 - 114
Target Start/End: Original strand, 54356285 - 54356374
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaat 114  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||  ||||||||||| | ||||| |||||||    
T  54356285 ttgtttggatataactatataaaagggattttttgttacaaaattagttcaatcttttaaatcatattttctctctcctctaaaaaaaat 54356374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 25 - 162
Target Start/End: Original strand, 8708034 - 8708166
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatact 124  Q
    |||||| |||| ||||| ||||||   ||||||||||||||||||||||||||||||||||  ||||||||||| | ||||  |||||| | ||||   |    
T  8708034 ttgttttgatacaactatataaaagaaattttttgttacaaaattagttcaatcttttaaatcatattttctctctcctct--aaaaaaaaatcta---t 8708128  T
Q  125 tttttgagaagctactcttaacagtttctcatttgaag 162  Q
    ||||||||||||| |||||||||| |||||||||||||    
T  8708129 tttttgagaagctgctcttaacagcttctcatttgaag 8708166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 25 - 162
Target Start/End: Original strand, 9059921 - 9060053
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatact 124  Q
    |||||| |||| ||||| ||||||   ||||||||||||||||||||||||||||||||||  ||||||||||| | ||||  |||||| | ||||   |    
T  9059921 ttgttttgatacaactatataaaagaaattttttgttacaaaattagttcaatcttttaaatcatattttctctctcctct--aaaaaaaaatcta---t 9060015  T
Q  125 tttttgagaagctactcttaacagtttctcatttgaag 162  Q
    ||||||||||||| |||||||||| |||||||||||||    
T  9060016 tttttgagaagctgctcttaacagcttctcatttgaag 9060053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 25 - 164
Target Start/End: Complemental strand, 21388491 - 21388358
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatact 124  Q
    ||||||||||| ||||| |||||| ||||||||||||| ||||||||||||||||||||||  ||||||||||| | ||||| |||||||  |      |    
T  21388491 ttgtttggatacaactatataaaagggattttttgttataaaattagttcaatcttttaaacaatattttctctctcctctaaaaaaaatctt------t 21388398  T
Q  125 tttttgagaagctactcttaacagtttctcatttgaagat 164  Q
    ||||||||||| | |||||||||| ||||||||| |||||    
T  21388397 tttttgagaagttgctcttaacagcttctcatttaaagat 21388358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 24 - 162
Target Start/End: Complemental strand, 7433672 - 7433541
Alignment:
Q  24 cttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatac 123  Q
    |||||||||||| ||||| |||||| | |||||||||||||||||||||| |||||||||||  ||||||||||||| |||||  ||||||    ||       
T  7433672 cttgtttggatacaactatataaaatgaattttttgttacaaaattagtttaatcttttaaatcatattttctcttttctctaagaaaaat----ta--- 7433580  T
Q  124 ttttttgagaagctactcttaacagtttctcatttgaag 162  Q
    ||||||| |||||| |||||||||| |||||||||||||    
T  7433579 ttttttgcgaagcttctcttaacagcttctcatttgaag 7433541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 114
Target Start/End: Original strand, 12101077 - 12101166
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaat 114  Q
    ||||||||||||||||| ||||||  ||| |||||||||||||||||||||||||||||||  ||||||||||| | ||||| |||||||    
T  12101077 ttgtttggatataactatataaaagagatgttttgttacaaaattagttcaatcttttaaacaatattttctctcttctctaaaaaaaat 12101166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 25 - 162
Target Start/End: Complemental strand, 3942649 - 3942515
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaat-cttttaaaatatattttctctttgctctacaaaaaatactctatac 123  Q
    ||||||| ||| ||||| |||||| |||||||||||||||||||||||||||| |||| |||| ||||||||||| | || || |||||| | ||||       
T  3942649 ttgtttgaatacaactatataaaagggattttttgttacaaaattagttcaatcctttaaaaaaatattttctctctactata-aaaaaaaaatcta--- 3942554  T
Q  124 ttttttgagaagctactcttaacagtttctcatttgaag 162  Q
    |||||||||||||| |||||||||| || ||||||||||    
T  3942553 ttttttgagaagctgctcttaacagcttttcatttgaag 3942515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 10333117 - 10333190
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctct 98  Q
    |||||| |||| ||||| |||||| ||||||||||||||||||||||||||||||||||||  |||||||||||    
T  10333117 ttgtttagatacaactatataaaagggattttttgttacaaaattagttcaatcttttaaacaatattttctct 10333190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 114
Target Start/End: Complemental strand, 44077873 - 44077782
Alignment:
Q  25 ttgtttggatataactagataaaaaggatttttt--gttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaat 114  Q
    ||||||||||| ||||| |||||| | |||||||  ||||||||||||||||||||||||||| |||||||||||| | ||||| |||||||    
T  44077873 ttgtttggatacaactatataaaatgtattttttttgttacaaaattagttcaatcttttaaattatattttctctcttctctaaaaaaaat 44077782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 162
Target Start/End: Complemental strand, 47567708 - 47567576
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatact 124  Q
    |||||||||||  |||| |||||| ||||||||||||||||| |||||||||||||||||   ||||||||||| | ||||| ||||||   |||||  |    
T  47567708 ttgtttggatactactatataaaagggattttttgttacaaagttagttcaatcttttaagcaatattttctctctcctctaaaaaaaa---tctat--t 47567614  T
Q  125 tttttgagaagctactcttaacagtttctcatttgaag 162  Q
    ||||| ||||||| |||||||||  || ||||||||||    
T  47567613 ttttttagaagctgctcttaacaacttttcatttgaag 47567576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 27 - 162
Target Start/End: Original strand, 54143011 - 54143140
Alignment:
Q  27 gtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatacttt 126  Q
    |||||||||  |||| |||||| |||||||||||||||||||||||||||| |||||||  ||||||||||| | ||||| | ||||||   ||   |||    
T  54143011 gtttggatacgactatataaaatggattttttgttacaaaattagttcaattttttaaacaatattttctctctcctctaaacaaaata---ta---ttt 54143104  T
Q  127 tttgagaagctactcttaacagtttctcatttgaag 162  Q
    ||||||| ||| | |||||||| |||||||||||||    
T  54143105 tttgagaggctgcgcttaacagcttctcatttgaag 54143140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 162
Target Start/End: Original strand, 11633080 - 11633209
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatact 124  Q
    ||||||||||| ||||| ||||||  |||||||| ||||||||||||||||||||||||||  ||||||||||  | ||||| ||||||   ||||   |    
T  11633080 ttgtttggatacaactatataaaagagattttttattacaaaattagttcaatcttttaaatcatattttctc--tcctctaaaaaaaa---tcta---t 11633171  T
Q  125 tttttgagaagctactcttaacagtttctcatttgaag 162  Q
    ||||||||||||| |||||||||  || ||||||||||    
T  11633172 tttttgagaagctgctcttaacaacttttcatttgaag 11633209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 56 - 158
Target Start/End: Complemental strand, 23027630 - 23027534
Alignment:
Q  56 tttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatacttttttgagaagctactcttaacagtttctca 155  Q
    ||||||||||||||||||||||||||||||  ||||||||||| | ||||| | ||||   ||||   |||||||||||||| |||||||||||||||||    
T  23027630 tttgttacaaaattagttcaatcttttaaatcatattttctctctcctctaaagaaaa---tcta---ttttttgagaagctgctcttaacagtttctca 23027537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 99
Target Start/End: Original strand, 21459642 - 21459704
Alignment:
Q  37 aactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctt 99  Q
    ||||| |||||| | |||||||||||||||||||||| |||||||||||| ||||||||||||    
T  21459642 aactatataaaaggaattttttgttacaaaattagtttaatcttttaaaacatattttctctt 21459704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 114
Target Start/End: Complemental strand, 10332755 - 10332667
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaat 114  Q
    ||||||||||| ||||| |||||| |||||||| ||||||||||||||||||| ||| |||  ||||||||||| | ||||| |||||||    
T  10332755 ttgtttggatacaactatataaaagggattttt-gttacaaaattagttcaatgtttaaaataatattttctctctcctctaaaaaaaat 10332667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 162
Target Start/End: Complemental strand, 24842552 - 24842422
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatact 124  Q
    ||||||||||| ||||| ||||||  | ||||||||||||||||||||||||| |||||||  ||||||||||  | ||||| ||||||   ||||   |    
T  24842552 ttgtttggatacaactatataaaagag-ttttttgttacaaaattagttcaatattttaaatcatattttctccctcctctaaaaaaaa---tcta---t 24842460  T
Q  125 tttttgagaagctactcttaacagtttctcatttgaag 162  Q
    ||||||||||| | |||||||||  |||||||||||||    
T  24842459 tttttgagaagatgctcttaacaacttctcatttgaag 24842422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 53 - 162
Target Start/End: Complemental strand, 34794513 - 34794410
Alignment:
Q  53 ttttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatacttttttgagaagctactcttaacagtttc 152  Q
    |||||| |||||| || ||||||||||||||||| ||||||||||| | ||||| ||||||   ||||   |||||||||||||| ||||||| | ||||    
T  34794513 tttttttttacaagatgagttcaatcttttaaaaaatattttctctctcctctaaaaaaaa---tcta---ttttttgagaagctgctcttaatattttc 34794420  T
Q  153 tcatttgaag 162  Q
    ||||||||||    
T  34794419 tcatttgaag 34794410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 51 - 162
Target Start/End: Original strand, 46515067 - 46515173
Alignment:
Q  51 gattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatacttttttgagaagctactcttaacagtt 150  Q
    ||||||||| ||||||||||||||||| |||||||  ||||||||||| | ||||| |||||||| ||||   ||||||||||||||  ||||||||  |    
T  46515067 gattttttgatacaaaattagttcaatattttaaaccatattttctctctcctcta-aaaaaata-tcta---ttttttgagaagctgttcttaacaact 46515161  T
Q  151 tctcatttgaag 162  Q
    ||||||||||||    
T  46515162 tctcatttgaag 46515173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 10297279 - 10297191
Alignment:
Q  25 ttgtttggatataactagata-aaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaa 112  Q
    ||||||||||| ||||| ||| ||||||  ||| ||||||||||||||||||||||||||||  ||||||||||| | ||||| |||||    
T  10297279 ttgtttggatacaactatatataaaagggatttctgttacaaaattagttcaatcttttaaataatattttctctctcctctaaaaaaa 10297191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 162
Target Start/End: Complemental strand, 30498509 - 30498379
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatact 124  Q
    |||||| |||| ||||| ||||||  |||||| ||||| |||||||||||||| |||| |  |||||||||||| | |||||    ||||| | |||       
T  30498509 ttgttttgatacaactatataaaagagattttctgttataaaattagttcaatattttgatctatattttctctctcctcta----aaataatttat--- 30498417  T
Q  125 tttttgagaagctactcttaacagtttctcatttgaag 162  Q
    |||||||||||||||||||||||  |||||||||||||    
T  30498416 tttttgagaagctactcttaacaacttctcatttgaag 30498379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 40285111 - 40285041
Alignment:
Q  28 tttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctct 98  Q
    |||||||| ||||| |||||| | ||||||||||||||||||| |||||| |||||||  |||||||||||    
T  40285111 tttggatacaactatataaaaggaattttttgttacaaaattaattcaatattttaaatcatattttctct 40285041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 53877664 - 53877730
Alignment:
Q  32 gatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctct 98  Q
    |||||||||| |||||| ||||| |||||| |||||| ||||||||||||||||  |||||||||||    
T  53877664 gatataactatataaaagggattatttgttgcaaaatcagttcaatcttttaaatcatattttctct 53877730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 54981677 - 54981604
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctct 98  Q
    |||||| |||| || || ||||||| |||||||  || ||||||||||||||||||||||| ||||||||||||    
T  54981677 ttgttttgatacaattatataaaaatgatttttcattgcaaaattagttcaatcttttaaattatattttctct 54981604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 24485665 - 24485606
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaa 84  Q
    ||||||||||| ||||| ||||||  | ||||||||||||||| ||||||||||||||||    
T  24485665 ttgtttggatacaactatataaaataggttttttgttacaaaactagttcaatcttttaa 24485606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 33832814 - 33832873
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaa 84  Q
    ||||||||||| ||||| ||||||  |||||||||| ||||||||| |||||||||||||    
T  33832814 ttgtttggatacaactatataaaagagattttttgtcacaaaattaattcaatcttttaa 33832873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 45586143 - 45586205
Alignment:
Q  52 attttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaat 114  Q
    ||||||||||||||||||||||||||||||| ||  |||||||| || | ||||| |||||||    
T  45586143 attttttgttacaaaattagttcaatcttttgaaccatattttcactctcctctaaaaaaaat 45586205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 10297429 - 10297502
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctct 98  Q
    |||||| |||| || || ||||||  ||||||||||||||||||||||||||| ||| |||  |||||||||||    
T  10297429 ttgttttgatacaaatatataaaagagattttttgttacaaaattagttcaatttttaaaaccatattttctct 10297502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 26167961 - 26167898
Alignment:
Q  25 ttgtttggatataactagataaaaaggatttttt---gttacaaaattagttcaatcttttaaa 85  Q
    ||||||||||| ||||| ||||||  ||||||||   |||||||||||||||||||||||||||    
T  26167961 ttgtttggatacaactatataaaagagatttttttttgttacaaaattagttcaatcttttaaa 26167898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 10317087 - 10317043
Alignment:
Q  54 tttttgttacaaaattagttcaatcttttaaaatatattttctct 98  Q
    |||||||||||||||||||| |||||||||||  |||||||||||    
T  10317087 tttttgttacaaaattagtttaatcttttaaataatattttctct 10317043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 47567829 - 47567774
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatctt 80  Q
    |||||||||||  |||| |||||| ||||||||||||||||| |||||| ||||||    
T  47567829 ttgtttggatactactatataaaagggattttttgttacaaagttagtttaatctt 47567774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 162
Target Start/End: Original strand, 10334295 - 10334333
Alignment:
Q  124 ttttttgagaagctactcttaacagtttctcatttgaag 162  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  10334295 ttttttgagaagctgctcttaacagcttctcatttgaag 10334333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 42583609 - 42583670
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaa-ttagttcaatcttttaaa 85  Q
    ||||||| ||| ||||| ||||||  |||||||||||| |||| ||||||||||||||||||    
T  42583609 ttgtttgaatacaactatataaaagagattttttgttataaaaattagttcaatcttttaaa 42583670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 113
Target Start/End: Complemental strand, 2788522 - 2788434
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaa 113  Q
    ||||||||||| |||||  |||||  ||||||||||| ||||||||  || ||||||||| |  ||||||||||   ||||||||||||    
T  2788522 ttgtttggatacaactatgtaaaagtgattttttgtttcaaaattatctccatcttttaatacttattttctctcccctctacaaaaaa 2788434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 51415991 - 51415963
Alignment:
Q  1 ttcaaaggtaatttagaaaaaaccttgtt 29  Q
    |||||||||||||||||||||||||||||    
T  51415991 ttcaaaggtaatttagaaaaaaccttgtt 51415963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 25 - 162
Target Start/End: Complemental strand, 106149 - 106019
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatact 124  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||| | |||||||||||    ||||   |    
T  106149 ttgtttggatacaactatataaaaaggattttttgttacaaaattagttcaatcttttaaatcatattttctctctcctctacaaaaa----tcta---t 106057  T
Q  125 tttttgagaagctactcttaacagtttctcatttgaag 162  Q
    ||||||||||| |  ||||||||| |||||||||||||    
T  106056 tttttgagaaggtgttcttaacagcttctcatttgaag 106019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 162
Target Start/End: Original strand, 205261 - 205391
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatact 124  Q
    |||||| |||| ||||| |||||| | ||||||||||||||||||||||||||||||||||  ||||||||||| | ||||| ||||||   ||||   |    
T  205261 ttgtttagatacaactatataaaa-gaattttttgttacaaaattagttcaatcttttaaacaatattttctctctcctctaaaaaaaa---tcta---t 205353  T
Q  125 tttttgagaagctactcttaacagtttctcatttgaag 162  Q
    ||||||||||||| |||||||| | |||||||||||||    
T  205354 tttttgagaagctgctcttaacggcttctcatttgaag 205391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 162
Target Start/End: Original strand, 54175850 - 54175981
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatact 124  Q
    ||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||  ||||||||||| | ||||| ||||||   ||||   |    
T  54175850 ttgtttggatacaactatataaaagggattttttgttacaaaattagttcaatcttttaaaccatattttctctctcctctaaaaaaaa---tcta---t 54175943  T
Q  125 tttttgagaagctactcttaacagtttctcatttgaag 162  Q
    ||||||||||||| |||||||| | |||||||||||||    
T  54175944 tttttgagaagctgctcttaaccgcttctcatttgaag 54175981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 25 - 162
Target Start/End: Complemental strand, 7238968 - 7238838
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatact 124  Q
    ||||||||||| ||||| |||||| ||| ||||||||||||||||||||||||||||||||  ||||||||||| | ||||| |||||||      |  |    
T  7238968 ttgtttggatacaactatataaaagggaatttttgttacaaaattagttcaatcttttaaacaatattttctctctcctcta-aaaaaat------ttat 7238876  T
Q  125 tttttgagaagctactcttaacagtttctcatttgaag 162  Q
    ||||||||||||| |||||| |||||||||||||||||    
T  7238875 tttttgagaagctgctcttagcagtttctcatttgaag 7238838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 158
Target Start/End: Original strand, 41692449 - 41692576
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatact 124  Q
    ||||||||||| || || |||||||||||||||||||||||||||| ||||||||||||||  ||||||||||| | ||||| ||||||||   ||   |    
T  41692449 ttgtttggatacaattatataaaaaggattttttgttacaaaattaattcaatcttttaaatcatattttctctctcctctaaaaaaaata---ta---t 41692542  T
Q  125 tttttgagaagctactcttaacagtttctcattt 158  Q
    ||||||||||| | |||||||||| |||||||||    
T  41692543 tttttgagaagatgctcttaacagcttctcattt 41692576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 25 - 162
Target Start/End: Complemental strand, 19298595 - 19298461
Alignment:
Q  25 ttgtttggatataactagataaaaaggatttttt--gttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctata 122  Q
    ||||||| ||| ||||| |||||| |||||||||  |||||||||||||||||||||||||||  ||||||||||| | ||||  |||||| | ||||      
T  19298595 ttgtttgaatacaactatataaaagggattttttttgttacaaaattagttcaatcttttaaatcatattttctctctcctct--aaaaaaaaatcta-- 19298500  T
Q  123 cttttttgagaagctactcttaacagtttctcatttgaag 162  Q
     |||||||||||||| |||||||||| |||||||||||||    
T  19298499 -ttttttgagaagctgctcttaacagcttctcatttgaag 19298461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 28 - 162
Target Start/End: Original strand, 44886190 - 44886319
Alignment:
Q  28 tttggatataactagataaaaaggatttt-ttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatacttt 126  Q
    |||||||| ||||| |||||| ||||||| |||||||||||||||||||||||||||||  ||||||||||| | ||||||||||   | ||||   |||    
T  44886190 tttggatacaactatataaaagggatttttttgttacaaaattagttcaatcttttaaatcatattttctctctcctctacaaaa---attcta---ttt 44886283  T
Q  127 tttgagaagctactcttaacagtttctcatttgaag 162  Q
    ||||||||||| || ||||||| |||||||||||||    
T  44886284 tttgagaagctgcttttaacagcttctcatttgaag 44886319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 46 - 115
Target Start/End: Original strand, 41104035 - 41104104
Alignment:
Q  46 aaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaata 115  Q
    ||||||| ||||||||||||||||||||||||||||||||  ||||||||||||| ||||| ||||||||    
T  41104035 aaaaggactttttgttacaaaattagttcaatcttttaaatcatattttctctttcctctaaaaaaaata 41104104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 25 - 114
Target Start/End: Complemental strand, 49897431 - 49897342
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaat 114  Q
    ||||||||||| ||||| |||||| ||||| ||||||||||||||||||||||||||||||  ||||||||||  | ||||| |||||||    
T  49897431 ttgtttggatacaactatataaaagggattatttgttacaaaattagttcaatcttttaaacaatattttctccctcctctaaaaaaaat 49897342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 111
Target Start/End: Original strand, 50715691 - 50715778
Alignment:
Q  25 ttgtttggatataactagataaaaaggatttt-ttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaa 111  Q
    ||||||||||| | ||| |||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||| | ||||| ||||    
T  50715691 ttgtttggatacacctatataaaagggatttttttgttacaaaattagttcaatctttttaaatatattttctctctcctctaaaaaa 50715778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 162
Target Start/End: Original strand, 11125977 - 11126108
Alignment:
Q  25 ttgtttggatataactagataaaa-aggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatac 123  Q
    ||||||| ||| ||||| |||||| || ||||||| ||||||||||||||||||||||||||| ||||| ||||| | ||||| |||||    |||||      
T  11125977 ttgtttgaatacaactacataaaagagtatttttt-ttacaaaattagttcaatcttttaaaaaatattatctctctcctctaaaaaaa----tctat-- 11126069  T
Q  124 ttttttgagaagctactcttaacagtttctcatttgaag 162  Q
    |||||||||||| | |||||||||| |||||||||||||    
T  11126070 ttttttgagaagatgctcttaacagcttctcatttgaag 11126108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 114
Target Start/End: Original strand, 12928566 - 12928656
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatat-attttctctttgctctacaaaaaat 114  Q
    ||||||||||| | ||| | ||||| |||||||||||||||||||||||||||||||||| || | ||||||||| | ||||| |||||||    
T  12928566 ttgtttggatacatctataaaaaaatgattttttgttacaaaattagttcaatcttttaacatttgattttctctgtcctctaaaaaaaat 12928656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 114
Target Start/End: Complemental strand, 39136131 - 39136045
Alignment:
Q  28 tttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaat 114  Q
    |||||||| ||||| |||||||  |||||||||||||| |||||||||||| ||||||  ||||||||||| | ||||| |||||||    
T  39136131 tttggatacaactatataaaaataattttttgttacaatattagttcaatcgtttaaatcatattttctctctcctctaaaaaaaat 39136045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 54806918 - 54806864
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatct 79  Q
    ||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||    
T  54806918 ttgtttggatataactatataaaatggattttttgttataaaattagttcaatct 54806864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 2494155 - 2494082
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctct 98  Q
    ||||||||||| ||||| ||||||  |||||||||||||||||||| |||||| |||||||  |||||||||||    
T  2494155 ttgtttggatacaactatataaaagagattttttgttacaaaattaattcaatattttaaatcatattttctct 2494082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 114
Target Start/End: Complemental strand, 4780731 - 4780642
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaat 114  Q
    ||||||||||| ||||| ||||||  |||||||| ||||||||||||||||||||||||||  ||||| | ||| | ||||| |||||||    
T  4780731 ttgtttggatacaactatataaaagagattttttattacaaaattagttcaatcttttaaacaatattatgtctctcctctaaaaaaaat 4780642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 51 - 162
Target Start/End: Complemental strand, 6046469 - 6046362
Alignment:
Q  51 gattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatacttttttgagaagctactcttaacagtt 150  Q
    |||||||||||| |||||||||||||||||| |||   |||||||||||| ||||   ||||| | |||||   ||||||||||||| |||||||||| |    
T  6046469 gattttttgttataaaattagttcaatctttcaaacattattttctcttt-ctcttttaaaaaaaatctat---tttttgagaagctgctcttaacagct 6046374  T
Q  151 tctcatttgaag 162  Q
    ||||||||||||    
T  6046373 tctcatttgaag 6046362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 53130932 - 53130875
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatctttt 82  Q
    ||||||||||| ||||| ||||||  ||||||||||||||||||||||||||||||||    
T  53130932 ttgtttggatacaactatataaaagagattttttgttacaaaattagttcaatctttt 53130875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 29100838 - 29100928
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgt---tacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaa 112  Q
    ||||||||||| ||||| |||||||  ||||||| |   ||||||||||||||||||||||||| |||||||||||| | ||||| |||||    
T  29100838 ttgtttggatacaactatataaaaataattttttttgtttacaaaattagttcaatcttttaaattatattttctctctcctctaaaaaaa 29100928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 113
Target Start/End: Complemental strand, 36889750 - 36889662
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaa 113  Q
    ||||||||||| |||   ||||||| ||||||||||||||||||||||||||||||||||  | | |||||||| | ||||| ||||||    
T  36889750 ttgtttggatacaacggtataaaaatgattttttgttacaaaattagttcaatcttttaacctttgttttctctctcctctaaaaaaaa 36889662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 11125268 - 11125327
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaa 84  Q
    ||||||||||| ||||| |||||| |||||||| || |||||||||||||||||||||||    
T  11125268 ttgtttggatacaactatataaaagggatttttagtaacaaaattagttcaatcttttaa 11125327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 51 - 98
Target Start/End: Complemental strand, 33803024 - 33802977
Alignment:
Q  51 gattttttgttacaaaattagttcaatcttttaaaatatattttctct 98  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||    
T  33803024 gattttttgttacaaaattagttcaatcttttaatacatattttctct 33802977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 660184 - 660256
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctct 98  Q
    ||||||| ||| ||||| |||||| ||||||| | |||||||||||||| |||||||||||| |||||||||||    
T  660184 ttgtttgaatacaactacataaaagggattttat-ttacaaaattagtttaatcttttaaaaaatattttctct 660256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 148
Target Start/End: Original strand, 9519061 - 9519151
Alignment:
Q  51 gattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatacttttttgagaagctactcttaacag 148  Q
    |||||||||||||||||||||||||||||||||||  |||||||| || | ||||   ||||||| ||||   |||||||||||||| ||||||||||    
T  9519061 gattttttgttacaaaattagttcaatcttttaaatcatattttccctctcctct---aaaaata-tcta---ttttttgagaagctgctcttaacag 9519151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 105
Target Start/End: Original strand, 29618255 - 29618335
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctct 105  Q
    |||||| |||| ||||| ||||||| ||||| || |||||||||||||| |||||||| |||  |||||||||||| ||||    
T  29618255 ttgtttagatacaactatataaaaaagatttgttattacaaaattagtttaatcttttgaaacctattttctctttcctct 29618335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 161
Target Start/End: Original strand, 43495876 - 43495978
Alignment:
Q  53 ttttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatacttttttgagaagctactcttaacagtttc 152  Q
    |||||| |||||||||||||| |||||||||||| ||||||||||| | ||||| |||| |   ||||    ||||||||||||| |||||||||| |||    
T  43495876 ttttttattacaaaattagtttaatcttttaaaacatattttctctctcctctaaaaaaga---tcta---atttttgagaagctgctcttaacagcttc 43495969  T
Q  153 tcatttgaa 161  Q
    | |||||||    
T  43495970 ttatttgaa 43495978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 29993466 - 29993417
Alignment:
Q  46 aaaaggattttttgttacaaaattagttcaatcttttaaaatatattttc 95  Q
    |||| |||||||||||||||||||||||||||||||| |||  |||||||    
T  29993466 aaaatgattttttgttacaaaattagttcaatcttttgaaacttattttc 29993417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 27839041 - 27838986
Alignment:
Q  25 ttgtttggatataactagataaaaaggatttttt-gttacaaaattagttcaatct 79  Q
    ||||||||||| ||||| | |||| ||||||||| |||||||||||||||||||||    
T  27839041 ttgtttggatacaactatacaaaagggatttttttgttacaaaattagttcaatct 27838986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 82
Target Start/End: Original strand, 42882083 - 42882114
Alignment:
Q  51 gattttttgttacaaaattagttcaatctttt 82  Q
    ||||||||||||||||||||||||||||||||    
T  42882083 gattttttgttacaaaattagttcaatctttt 42882114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 40956925 - 40956975
Alignment:
Q  32 gatataactagataaaaaggattttttgttacaaaattagttcaatctttt 82  Q
    |||||||||| ||||||  |||||||||||||||||||| ||| |||||||    
T  40956925 gatataactatataaaatagattttttgttacaaaattacttccatctttt 40956975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 112
Target Start/End: Complemental strand, 7770278 - 7770217
Alignment:
Q  52 attttttgttacaaaattagttcaa-tcttttaaaatatattttctctttgctctacaaaaa 112  Q
    ||||||||||| ||||||||||||| ||||||||   ||||||||||||| ||||| |||||    
T  7770278 attttttgttataaaattagttcaattcttttaatccatattttctcttttctctaaaaaaa 7770217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 13222225 - 13222270
Alignment:
Q  53 ttttttgttacaaaattagttcaatcttttaaaatatattttctct 98  Q
    |||||||||||||||||||||||||||||| |   |||||||||||    
T  13222225 ttttttgttacaaaattagttcaatcttttgatccatattttctct 13222270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 24739097 - 24739044
Alignment:
Q  45 aaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctct 98  Q
    |||| ||||||||| |||||||||||||||||| |||||||  ||||| |||||    
T  24739097 aaaagggattttttattacaaaattagttcaattttttaaaccatattatctct 24739044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 113
Target Start/End: Complemental strand, 5029052 - 5028964
Alignment:
Q  25 ttgtttggatataactagataaaaaggatttt--ttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaa 113  Q
    ||||||||||| ||||| ||| || |||||||  ||||| ||||||||||||||||  |||||  ||||||||||| | ||||| ||||||    
T  5029052 ttgtttggatacaactatatacaagggattttatttgttccaaaattagttcaatc--ttaaatcatattttctctctcctctaaaaaaaa 5028964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 162
Target Start/End: Complemental strand, 43326034 - 43325903
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatact 124  Q
    ||||||||||| || || |||||| |||||||||||||||||||||||| |||||||||||| ||||||||||| | ||||| ||||||   ||||   |    
T  43326034 ttgtttggatacaattatataaaagggattttttgttacaaaattagtttaatcttttaaaacatattttctctctcctctaaaaaaaa---tcta---t 43325941  T
Q  125 tttttgagaagctactcttaacagtttctcatttgaag 162  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  43325940 tttttaagaagctgctcttaacagtttctcatttgaag 43325903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 162
Target Start/End: Original strand, 49243793 - 49243924
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatact 124  Q
    ||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |  |||| ||||||   ||||   |    
T  49243793 ttgtttggatacaactatataaaagggattttttgttacaaaattagttcaatcttttaaaagatattttctctctcatctaaaaaaaa---tcta---t 49243886  T
Q  125 tttttgagaagctactcttaacagtttctcatttgaag 162  Q
    ||||||||||||| ||| |||||| |||||||||||||    
T  49243887 tttttgagaagctgctcctaacagcttctcatttgaag 49243924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 158
Target Start/End: Original strand, 17054241 - 17054368
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatact 124  Q
    |||||| |||| ||||| |||||| | ||||||||||||||||||||||||||||||||||  ||||||||||| | ||||| ||||||||   ||   |    
T  17054241 ttgtttcgatacaactatataaaatgaattttttgttacaaaattagttcaatcttttaaacaatattttctctctcctctaaaaaaaata---ta---t 17054334  T
Q  125 tttttgagaagctactcttaacagtttctcattt 158  Q
    ||||||||||||| |||||||||| |||||||||    
T  17054335 tttttgagaagctgctcttaacagcttctcattt 17054368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 44 - 162
Target Start/End: Original strand, 24705397 - 24705509
Alignment:
Q  44 taaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatacttttttgagaagctactctt 143  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||  |||||||| | ||   ||||||||||| || |||||    
T  24705397 taaaagggattttttgttacaaaattagttcaatcttttaaaatatattttctctctcctct--aaaaaata-ttta---ttttttgagaaactgctctt 24705490  T
Q  144 aacagtttctcatttgaag 162  Q
    ||||| |||||||||||||    
T  24705491 aacagcttctcatttgaag 24705509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 162
Target Start/End: Original strand, 6844477 - 6844608
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatact 124  Q
    ||||||||||  ||||| ||||||  ||||||||||||||||||||||| |||||||||||  ||||||||||| | ||||| ||||||||   ||   |    
T  6844477 ttgtttggatgcaactatataaaagagattttttgttacaaaattagtttaatcttttaaataatattttctctctcctctaaaaaaaata---ta---t 6844570  T
Q  125 tttttgagaagctactcttaacagtttctcatttgaag 162  Q
    |||||||||||||  ||||||||| |||||||||||||    
T  6844571 tttttgagaagcttatcttaacagcttctcatttgaag 6844608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 162
Target Start/End: Complemental strand, 47795131 - 47795005
Alignment:
Q  28 tttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatactttt 127  Q
    |||||||| || || |||||| ||||||||||||||||||||||||||| ||||||||  ||||||||||| | ||||| ||||| ||        ||||    
T  47795131 tttggatacaaatatataaaatggattttttgttacaaaattagttcaaacttttaaatcatattttctctctcctctaaaaaaacta--------tttt 47795040  T
Q  128 ttgagaagctactcttaacagtttctcatttgaag 162  Q
    |||||||||| |||||||||| |||||||||||||    
T  47795039 ttgagaagctgctcttaacagcttctcatttgaag 47795005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 35 - 114
Target Start/End: Original strand, 42834931 - 42835010
Alignment:
Q  35 ataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaat 114  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||  |||||||||||| | ||||| |||||||    
T  42834931 ataactatataaaagggattttttgttacaaaattagttcaatcttttaatctatattttctctctcctctaaaaaaaat 42835010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 145
Target Start/End: Original strand, 43114759 - 43114877
Alignment:
Q  25 ttgtttggatataactagataaaaaggatttttt-gttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatac 123  Q
    ||||||||||||||||| ||||||  |||||||| ||| |||||||||||||||||||| |   ||||||||||||| ||||| |||||| | ||||       
T  43114759 ttgtttggatataactatataaaagagatttttttgttgcaaaattagttcaatcttttgacccatattttctcttttctctataaaaaaaaatcta--- 43114855  T
Q  124 ttttttgagaagctactcttaa 145  Q
    ||||||||||| ||||||||||    
T  43114856 ttttttgagaatctactcttaa 43114877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 47795511 - 47795424
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaa 112  Q
    |||||| ||||  |||| |||||| |||||||||||||||||||||| ||||||||||||| |||||||||||| | ||||| |||||    
T  47795511 ttgttttgatacgactatataaaagggattttttgttacaaaattagctcaatcttttaaattatattttctctctcctctaaaaaaa 47795424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 162
Target Start/End: Original strand, 24686207 - 24686337
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatact 124  Q
    ||||||||||| | ||| ||||||  ||||||||||||||||||||||||||||||||||   ||||||||||| | ||||  |||||    ||||   |    
T  24686207 ttgtttggatacagctatataaaagcgattttttgttacaaaattagttcaatcttttaatccatattttctctctcctcttaaaaaa----tcta---t 24686299  T
Q  125 tttttgagaagctactcttaacagtttctcatttgaag 162  Q
    ||||||||||| | |||||||||| |||||||||||||    
T  24686300 tttttgagaagttgctcttaacagcttctcatttgaag 24686337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 43 - 162
Target Start/End: Original strand, 39842797 - 39842911
Alignment:
Q  43 ataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatacttttttgagaagctactct 142  Q
    |||||| ||||||||||||| ||||||||||||||||||||||  ||||||||||| | ||||  |||||| | ||||   |||||||||||||| ||||    
T  39842797 ataaaagggattttttgttagaaaattagttcaatcttttaaatcatattttctctctcctct--aaaaaaaaatcta---ttttttgagaagctgctct 39842891  T
Q  143 taacagtttctcatttgaag 162  Q
     || || |||||||||||||    
T  39842892 caatagcttctcatttgaag 39842911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 161
Target Start/End: Original strand, 47796302 - 47796434
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatact 124  Q
    |||||| |||| ||||| ||||||   ||||||| ||||||||||||||| ||||||||||  ||||||||||| |  |||| |||| |||   |||| |    
T  47796302 ttgtttagatacaactatataaaagaaattttttattacaaaattagttctatcttttaaagaatattttctctctcgtctaaaaaatata---tata-t 47796397  T
Q  125 tttttgagaagctactcttaacagtttctcatttgaa 161  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  47796398 tttttgagaagctgctcttaacagcttctcatttgaa 47796434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 6318923 - 6318996
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctct 98  Q
    ||||||||||  ||||| |||||| |||||||||||||||||||||||||||||||||||   |||||||||||    
T  6318923 ttgtttggatgcaactatataaaagggattttttgttacaaaattagttcaatcttttaatccatattttctct 6318996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 162
Target Start/End: Original strand, 11981727 - 11981856
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatact 124  Q
    ||||||||||| ||||| |||||| ||||||| ||||||||||||||||||||||||||||  ||||||| | | | ||||| ||||||   ||||   |    
T  11981727 ttgtttggatacaactatataaaagggatttt-tgttacaaaattagttcaatcttttaaacaatatttt-tttctactctaaaaaaaa---tcta---t 11981818  T
Q  125 tttttgagaagctactcttaacagtttctcatttgaag 162  Q
    ||||| ||||||| |||||||||| |||||||||||||    
T  11981819 ttttttagaagctgctcttaacagcttctcatttgaag 11981856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 114
Target Start/End: Original strand, 47795950 - 47796039
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaat 114  Q
    |||||| ||||  |||| |||||| | |||||||||||||||||||| ||||||||||||| |||||||||||| | ||||| |||||||    
T  47795950 ttgttttgatacgactatataaaaggaattttttgttacaaaattagctcaatcttttaaattatattttctctctcctctaaaaaaaat 47796039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 156
Target Start/End: Complemental strand, 43115036 - 43114911
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatact 124  Q
    ||||||||||| | ||| ||||||  ||||||||||||||||||||||| ||||||| ||  |||||||||||| | ||||| ||||||   ||||   |    
T  43115036 ttgtttggatacagctatataaaatcgattttttgttacaaaattagtttaatctttaaatctatattttctctctcctctaaaaaaaa---tcta---t 43114943  T
Q  125 tttttgagaagctactcttaacagtttctcat 156  Q
    ||||||||||||| |||| ||||| |||||||    
T  43114942 tttttgagaagctgctctcaacagcttctcat 43114911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 48738509 - 48738596
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaa 112  Q
    |||||| |||| ||||  ||||||  |||||||||||||||||||||||||||||||||||  ||||||||||| | ||||| |||||    
T  48738509 ttgtttagatacaactgtataaaagtgattttttgttacaaaattagttcaatcttttaaacaatattttctctctcctctaaaaaaa 48738596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 33674998 - 33675067
Alignment:
Q  29 ttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctct 98  Q
    ||||||| ||||| ||||||  |||||||||||||||||||| ||||||||||||||  |||||||||||    
T  33674998 ttggatacaactatataaaagagattttttgttacaaaattaattcaatcttttaaacaatattttctct 33675067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 47794870 - 47794817
Alignment:
Q  43 ataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttct 96  Q
    |||||| ||||||||||||||||||||||||||||||||||||  |||||||||    
T  47794870 ataaaagggattttttgttacaaaattagttcaatcttttaaaccatattttct 47794817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 162
Target Start/End: Original strand, 6941401 - 6941503
Alignment:
Q  54 tttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatacttttttgagaagctactcttaacagtttct 153  Q
    ||||||||||||||| | ||||||||||||||| ||||||| ||| | ||||| ||||||||   ||   |||||||||||||| || ||||||| ||||    
T  6941401 tttttgttacaaaataacttcaatcttttaaaaaatattttttctctcctctaaaaaaaata---ta---ttttttgagaagctgcttttaacagcttct 6941494  T
Q  154 catttgaag 162  Q
    |||||||||    
T  6941495 catttgaag 6941503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 60 - 162
Target Start/End: Original strand, 11981163 - 11981259
Alignment:
Q  60 ttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatacttttttgagaagctactcttaacagtttctcatttg 159  Q
    |||||||| |||||||||||||||| || |||||||||| | ||||| ||||||| |       |||||||||||| |||||||||||| ||||||||||    
T  11981163 ttacaaaactagttcaatcttttaacatttattttctctctcctctaaaaaaaatcc------attttttgagaagttactcttaacagcttctcatttg 11981256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 43 - 162
Target Start/End: Original strand, 33241111 - 33241224
Alignment:
Q  43 ataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatacttttttgagaagctactct 142  Q
    |||||| ||||| ||||||||||| |||||||||| ||||||| |||||||||||  | ||||| ||||||   ||||    ||||||||||||| ||||    
T  33241111 ataaaagggattctttgttacaaatttagttcaatattttaaattatattttctccctcctctaaaaaaaa---tcta---gtttttgagaagctgctct 33241204  T
Q  143 taacagtttctcatttgaag 162  Q
    |||||| |||| ||||||||    
T  33241205 taacagcttctaatttgaag 33241224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 40793031 - 40793098
Alignment:
Q  29 ttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttct 96  Q
    ||||||| ||||| |||| |  ||||||| |||||||||||||||||||||||||||| |||||||||    
T  40793031 ttggatacaactacataagagagatttttcgttacaaaattagttcaatcttttaaaacatattttct 40793098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 51 - 98
Target Start/End: Complemental strand, 45296821 - 45296774
Alignment:
Q  51 gattttttgttacaaaattagttcaatcttttaaaatatattttctct 98  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||    
T  45296821 gattttttattacaaaattagttcaatcttttaaactatattttctct 45296774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 162
Target Start/End: Complemental strand, 8795428 - 8795322
Alignment:
Q  51 gattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatacttttttgagaagctactcttaacagtt 150  Q
    ||||||||||||||||||||||||||| |||||| || || ||||||| | ||||  |||||| | ||||   |||||| ||||| | |||||||||| |    
T  8795428 gattttttgttacaaaattagttcaatattttaacatttaatttctctctcctct--aaaaaaaaatcta---tttttttagaagttgctcttaacagct 8795334  T
Q  151 tctcatttgaag 162  Q
    ||||||||||||    
T  8795333 tctcatttgaag 8795322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 162
Target Start/End: Complemental strand, 47793185 - 47793071
Alignment:
Q  43 ataaaaaggatttttt-gttacaaaattagttcaatcttttaaaat-atattttctctttgctctacaaaaaatactctatacttttttgagaagctact 140  Q
    |||||| ||||||||| ||||||||||||||| ||| ||||||||| ||||||||||| | ||||| ||||||   ||||   |||||||||||||| ||    
T  47793185 ataaaagggattttttcgttacaaaattagtttaat-ttttaaaatcatattttctctctcctctaaaaaaaa---tcta---ttttttgagaagctgct 47793093  T
Q  141 cttaacagtttctcatttgaag 162  Q
    |||||||  |||||||||||||    
T  47793092 cttaacaacttctcatttgaag 47793071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 162
Target Start/End: Complemental strand, 49480318 - 49480187
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatact 124  Q
    |||||| |||| |||||  ||||| | |||||||||||||||||||||||||||||| |||  |||||||| || | ||||| |||||| |   ||   |    
T  49480318 ttgttttgatacaactatgtaaaaggaattttttgttacaaaattagttcaatctttaaaatgatattttcgctctcctctaaaaaaaaaa---ta---t 49480225  T
Q  125 tttttgagaagctactcttaacagtttctcatttgaag 162  Q
    ||||||||||||| |||| ||||| ||||| |||||||    
T  49480224 tttttgagaagctgctctcaacagcttctcgtttgaag 49480187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 162
Target Start/End: Original strand, 45378370 - 45378484
Alignment:
Q  43 ataaaaaggattttttgttacaaaattagttcaatcttttaaaatat-attttctctttgctctacaaaaaatactctatacttttttgagaagctactc 141  Q
    |||||| |||||||||||||||||| |||||||||||||| | || | ||||||||||  || || ||||||   ||||   |||||||||||||| |||    
T  45378370 ataaaagggattttttgttacaaaactagttcaatcttttgacatttaattttctcttccctttaaaaaaaa---tcta---ttttttgagaagctgctc 45378463  T
Q  142 ttaacagtttctcatttgaag 162  Q
    | ||||| |||||||||||||    
T  45378464 tgaacagcttctcatttgaag 45378484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 162
Target Start/End: Original strand, 12016876 - 12016989
Alignment:
Q  43 ataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatacttttttgagaagctactct 142  Q
    |||||| | ||||||||||| |||||||||||||||||||||   ||||||| ||| | ||||| ||||||   ||||   |||||| | ||||| ||||    
T  12016876 ataaaaggaattttttgttataaaattagttcaatcttttaatccatattttttctctcctctaaaaaaaa---tcta---tttttttataagcttctct 12016969  T
Q  143 taacagtttctcatttgaag 162  Q
    |||||| |||||||||||||    
T  12016970 taacagcttctcatttgaag 12016989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 10066475 - 10066521
Alignment:
Q  52 attttttgttacaaaattagttcaatcttttaaaatatattttctct 98  Q
    ||||||||| |||||||||||| ||||| ||||||||||||||||||    
T  10066475 attttttgtcacaaaattagtttaatctattaaaatatattttctct 10066521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 124 - 162
Target Start/End: Complemental strand, 21447483 - 21447445
Alignment:
Q  124 ttttttgagaagctactcttaacagtttctcatttgaag 162  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  21447483 ttttttgagaagctactcttaacagcttctcatttgaag 21447445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 161
Target Start/End: Original strand, 42429608 - 42429740
Alignment:
Q  25 ttgtttggatataactagataaaaaggatttttt-gttacaaaattagttcaatcttttaaaatat-attttctctttgctctacaaaaaatactctata 122  Q
    ||||||||||| | ||| |||||| ||||||||| |||||||||  | ||||||||||| | || | ||||||||| | |||||   |||||| |||||     
T  42429608 ttgtttggatacatctatataaaagggatttttttgttacaaaacaaattcaatcttttgatatttgattttctctctcctcta---aaaataatctat- 42429703  T
Q  123 cttttttgagaagctactcttaacagtttctcatttgaa 161  Q
      ||||||||||||| |||||||||| ||||||||||||    
T  42429704 --tttttgagaagctgctcttaacagcttctcatttgaa 42429740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 53 - 162
Target Start/End: Complemental strand, 52404219 - 52404117
Alignment:
Q  53 ttttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatacttttttgagaagctactcttaacagtttc 152  Q
    |||||||||| ||||||||||||| ||||||||  ||||||||||| | ||||| |||||||    ||   |||||||||||||| |||| || || |||    
T  52404219 ttttttgttataaaattagttcaaacttttaaatcatattttctctctcctctaaaaaaaat----ta---ttttttgagaagctgctctcaagagcttc 52404127  T
Q  153 tcatttgaag 162  Q
    ||||||||||    
T  52404126 tcatttgaag 52404117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 10106033 - 10105981
Alignment:
Q  51 gattttttgttacaaaattagttcaatcttttaaaatatattttctctttgct 103  Q
    |||||||||||||||||||||||||||| |||||    |||||||||||||||    
T  10106033 gattttttgttacaaaattagttcaatcatttaatccgtattttctctttgct 10105981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 42834687 - 42834615
Alignment:
Q  25 ttgtttggatataactagataaaaaggatttttt-gttacaaaattagttcaatcttttaaaatatattttct 96  Q
    |||||| |||| | ||| |||||| ||||||||| || ||||||||||||||||||||||||  |||||||||    
T  42834687 ttgtttagatacagctatataaaatggatttttttgtgacaaaattagttcaatcttttaaacaatattttct 42834615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 162
Target Start/End: Complemental strand, 10338271 - 10338233
Alignment:
Q  124 ttttttgagaagctactcttaacagtttctcatttgaag 162  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  10338271 ttttttgagaagctgctcttaacagcttctcatttgaag 10338233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 45807995 - 45808069
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttg-ttacaaaattagttcaatcttttaaaatatattttctct 98  Q
    ||||||||||| | ||| ||||||  ||||||||  ||||||||||||||||| ||||||||  |||||||||||    
T  45807995 ttgtttggatacacctatataaaagagatttttttattacaaaattagttcaaccttttaaacaatattttctct 45808069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 26271976 - 26272017
Alignment:
Q  53 ttttttgttacaaaattagttcaatcttttaaaatatatttt 94  Q
    |||||| ||||||||||||||||||||||||||  |||||||    
T  26271976 ttttttattacaaaattagttcaatcttttaaaccatatttt 26272017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 2e-26; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 81 - 165
Target Start/End: Original strand, 46898193 - 46898277
Alignment:
Q  81 ttaaaatatattttctctttgctctacaaaaaatactctatacttttttgagaagctactcttaacagtttctcatttgaagatg 165  Q
    |||||||||||||||||| | ||||| ||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||    
T  46898193 ttaaaatatattttctctctcctctaaaaaaaatactccatatttttttgagaagctactcttaacagcttctcatttgaagatg 46898277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 46897955 - 46898015
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaa 85  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  46897955 ttgtttggatataactagataaaagggattttttgttacaaaattagttcaatcttttaaa 46898015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 25 - 155
Target Start/End: Complemental strand, 30121995 - 30121871
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatact 124  Q
    ||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||   ||||||||||  | ||||| ||||||   ||||   |    
T  30121995 ttgtttggatacaactatataaaaagaattttttgttacaaaattagttcaatcttttaatccatattttctccctcctctaaaaaaaa---tcta---t 30121902  T
Q  125 tttttgagaagctactcttaacagtttctca 155  Q
    ||||||||||||| |||||||||| ||||||    
T  30121901 tttttgagaagctgctcttaacagcttctca 30121871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 47222617 - 47222543
Alignment:
Q  25 ttgtttggatataactagataaaaag-gattttttgttacaaaattagttcaatcttttaaaatatattttctct 98  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||  |||||||||||    
T  47222617 ttgtttggatataactatataaaaagagattttttgttacaaaattagttcaatcttttaaaccatattttctct 47222543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 25 - 113
Target Start/End: Original strand, 30121286 - 30121374
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaa 113  Q
    ||||||| ||| ||||| |||||| | |||||||||||||||||||||||||||||||||| |||||||||||| | ||||| ||||||    
T  30121286 ttgtttgaatacaactatataaaaggaattttttgttacaaaattagttcaatcttttaaattatattttctctctcctctaaaaaaaa 30121374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 162
Target Start/End: Original strand, 35526492 - 35526626
Alignment:
Q  25 ttgtttggatataactagataaaaaggatttt---ttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctat 121  Q
    ||||||||||| ||||| |||||| |||||||   ||||||||||||||||| ||||||||||| |||||||||||  | ||||| ||||||   ||||     
T  35526492 ttgtttggatacaactatataaaagggatttttttttgttacaaaattagtttaatcttttaaattatattttctcgctcctctaaaaaaaa---tcta- 35526587  T
Q  122 acttttttgagaagctactcttaacagtttctcatttgaag 162  Q
      |||||||||||||| || ||||||| |||||||||||||    
T  35526588 --ttttttgagaagctgcttttaacagcttctcatttgaag 35526626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 40261924 - 40261994
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttc 95  Q
    ||||||||||| ||||| ||||||||| ||||||||||||||||||||||||| |||||||| ||||||||    
T  40261924 ttgtttggatacaactatataaaaagggttttttgttacaaaattagttcaatattttaaaacatattttc 40261994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 25 - 162
Target Start/End: Complemental strand, 5801122 - 5800989
Alignment:
Q  25 ttgtttggatataactagataaaaaggatttttt-gttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatac 123  Q
    ||||||||||| ||||| ||||||  |||||||| ||||||||||||||||||| ||||||| | ||||||  || | ||||| ||||||     ||||     
T  5801122 ttgtttggatacaactatataaaagagatttttttgttacaaaattagttcaatattttaaattgtatttttcctctcctctaaaaaaaaa----tata- 5801028  T
Q  124 ttttttgagaagctactcttaacagtttctcatttgaag 162  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  5801027 ttttttgagaagctactcttaacagcttctcatttgaag 5800989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 14312537 - 14312450
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaa 112  Q
    |||||| |||| ||||| ||||||||||||||||||||||| || |||||||||||||||| | |||||||||| | ||||| |||||    
T  14312537 ttgtttagatacaactatataaaaaggattttttgttacaatataagttcaatcttttaaactctattttctctctcctctaaaaaaa 14312450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 38319959 - 38320030
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttct 96  Q
    ||||||||||| ||||| ||||||  |||||||||||||||||||||||||||||||||||  |||||||||    
T  38319959 ttgtttggatacaactatataaaagagattttttgttacaaaattagttcaatcttttaaaccatattttct 38320030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 162
Target Start/End: Complemental strand, 26246705 - 26246573
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatact 124  Q
    ||||||||||| ||||  ||||||  ||||||||||||||||||||||| |||||||||||   |||||||||| | ||||| ||||||   ||||   |    
T  26246705 ttgtttggatacaactttataaaagagattttttgttacaaaattagtttaatcttttaaaccctattttctctctcctctaaaaaaaa---tcta---t 26246612  T
Q  125 tttttgagaagctactcttaaca-gtttctcatttgaag 162  Q
    ||||||||||||| ||||||||| | |||||||||||||    
T  26246611 tttttgagaagcttctcttaacaggcttctcatttgaag 26246573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 115
Target Start/End: Original strand, 35223801 - 35223890
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaata 115  Q
    ||||||||||||||||| |||||| ||||||||||| || ||||||||||||| |||| || |||||||||||| | ||||| ||||||||    
T  35223801 ttgtttggatataactatataaaatggattttttgtcaccaaattagttcaat-ttttgaactatattttctctctcctctaaaaaaaata 35223890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 21696487 - 21696559
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctct 98  Q
    ||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||| ||  |||||||||||    
T  21696487 ttgtttggatacaactatataaaa-ggattttttgttacaaaattagttcaatcttttgaatcatattttctct 21696559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 162
Target Start/End: Complemental strand, 24162252 - 24162116
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatact 124  Q
    ||||||||||  | ||| ||||||  |||||||||||||||||||||||||||||||||||  ||  ||||||| | || || |||||| |   | || |    
T  24162252 ttgtttggatgcatctatataaaagagattttttgttacaaaattagttcaatcttttaaacaattgtttctctctcctttaaaaaaaaaaaaatcta-t 24162154  T
Q  125 tttttgagaagctactcttaacagtttctcatttgaag 162  Q
    ||||||||||||| |||||||||| |||||||||||||    
T  24162153 tttttgagaagctgctcttaacagcttctcatttgaag 24162116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 24688853 - 24688776
Alignment:
Q  37 aactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaat 114  Q
    ||||| ||||||| ||||||||||||| |||||||||||||||||||||  ||||||||||| | ||||| |||||||    
T  24688853 aactatataaaaatgattttttgttaccaaattagttcaatcttttaaaccatattttctctctcctctaaaaaaaat 24688776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 30 - 162
Target Start/End: Original strand, 26970742 - 26970867
Alignment:
Q  30 tggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatactttttt 129  Q
    |||||| || || |||||| ||| ||||||||||||||||||||||||||||||||  ||||||||||| | ||||| |||||      |||| ||||||    
T  26970742 tggatacaattatataaaagggactttttgttacaaaattagttcaatcttttaaacaatattttctctctcctctaaaaaaa------tata-tttttt 26970834  T
Q  130 gagaagctactcttaacagtttctcatttgaag 162  Q
    ||||| || ||| |||||| |||||||||||||    
T  26970835 gagaatctgctcctaacagcttctcatttgaag 26970867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 26970493 - 26970406
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaa 112  Q
    ||||||||||| ||||| || |||| ||||||||||||||||||||||||||| |||||||  ||||||| ||| | ||||| |||||    
T  26970493 ttgtttggatacaactatatgaaaatgattttttgttacaaaattagttcaatgttttaaatcatattttatctctcctctaaaaaaa 26970406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 113
Target Start/End: Complemental strand, 10283378 - 10283290
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaa 113  Q
    |||||| |||| | ||| |||||| ||||||||||||||||||||||||||||| ||||||  |||||| |||| | ||||| ||||||    
T  10283378 ttgtttcgatacagctatataaaagggattttttgttacaaaattagttcaatcgtttaaaccatatttcctctctcctctaaaaaaaa 10283290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 24689354 - 24689428
Alignment:
Q  25 ttgtttggatataactagataaaaaggatttt--ttgttacaaaattagttcaatcttttaaaatatattttctc 97  Q
    ||||||||||| ||||| ||||||  ||||||  |||||||||||||||||||||||||||||  ||||||||||    
T  24689354 ttgtttggatacaactatataaaagagattttttttgttacaaaattagttcaatcttttaaataatattttctc 24689428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 23640830 - 23640761
Alignment:
Q  29 ttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctct 98  Q
    ||||||| ||||  ||||||  |||||||| |||||||||||||||||||||||||  ||||||||||||    
T  23640830 ttggatacaactctataaaagagatttttttttacaaaattagttcaatcttttaatctatattttctct 23640761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 26175519 - 26175462
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatctttt 82  Q
    |||||||||| |||||| |||||| | |||||||||||||||||||||| ||||||||    
T  26175519 ttgtttggatgtaactatataaaatgaattttttgttacaaaattagttaaatctttt 26175462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 113
Target Start/End: Complemental strand, 33858071 - 33857986
Alignment:
Q  28 tttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaa 113  Q
    |||||||| ||||| ||||||  |||||||||||| |||||||||| |||||||| ||  ||||||| ||| ||||||| ||||||    
T  33858071 tttggatacaactatataaaagagattttttgttaaaaaattagtttaatcttttgaatcatattttatctctgctctaaaaaaaa 33857986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 161
Target Start/End: Complemental strand, 21696863 - 21696741
Alignment:
Q  32 gatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatacttttttga 131  Q
    |||| ||||| ||||||  |||||||||||||||||||||  ||||||||||||  |||||||| |||| ||| | ||||       |||| ||||||||    
T  21696863 gatacaactatataaaagagattttttgttacaaaattagaacaatcttttaaaccatattttccctttcctcaaaaaaa-------tatatttttttga 21696771  T
Q  132 gaagctactcttaacagtttctcatttgaa 161  Q
    |||||| ||||||| || || |||||||||    
T  21696770 gaagctgctcttaatagcttttcatttgaa 21696741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 112
Target Start/End: Complemental strand, 23809007 - 23808924
Alignment:
Q  29 ttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaa 112  Q
    ||||||| ||||| |||||| |||||||| |||||||||||| ||  || |||||||  ||||||||||||| ||||| |||||    
T  23809007 ttggatacaactatataaaagggatttttcgttacaaaattaattagattttttaaaccatattttctctttcctctaaaaaaa 23808924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 124 - 162
Target Start/End: Complemental strand, 10282044 - 10282006
Alignment:
Q  124 ttttttgagaagctactcttaacagtttctcatttgaag 162  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  10282044 ttttttgagaagctactcttaacagcttctcatttgaag 10282006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 157
Target Start/End: Original strand, 11486412 - 11486512
Alignment:
Q  51 gattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatacttttttgagaagctactcttaacagtt 150  Q
    |||||||| |||||||||||||||||| |||||||   |||||||||| | ||||| ||||||   ||||   |||||| ||||||||||| |||||| |    
T  11486412 gatttttttttacaaaattagttcaattttttaaatggtattttctctctcctctaaaaaaaa---tcta---tttttttagaagctactcataacagct 11486505  T
Q  151 tctcatt 157  Q
    |||||||    
T  11486506 tctcatt 11486512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 4594522 - 4594478
Alignment:
Q  52 attttttgttacaaaattagttcaatcttttaaaatatattttct 96  Q
    |||||||||||| |||||||||||||||||||||  |||||||||    
T  4594522 attttttgttactaaattagttcaatcttttaaaccatattttct 4594478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 35525952 - 35526012
Alignment:
Q  54 tttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaat 114  Q
    ||||||||||||||||||||||||||||||||   |||||||||  |  ||||||||||||    
T  35525952 tttttgttacaaaattagttcaatcttttaaacactattttctcccttttctacaaaaaat 35526012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 26151243 - 26151189
Alignment:
Q  28 tttggatataactagataaaaaggattttttgttacaaaattagttcaatctttt 82  Q
    |||||||| | ||| ||||||  ||||||||||||| ||||||||||||||||||    
T  26151243 tttggatacatctatataaaagagattttttgttactaaattagttcaatctttt 26151189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 29854704 - 29854778
Alignment:
Q  37 aactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaa 111  Q
    ||||| ||||||  ||||||| ||||||||||||||||||| |||| ||  ||||||||||| | ||||| ||||    
T  29854704 aactatataaaagagatttttcgttacaaaattagttcaatattttgaaccatattttctctctcctctaaaaaa 29854778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 10282558 - 10282501
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatctttt 82  Q
    |||||||||||  |||| |||||| | ||||||||| |||||||||||||||| ||||    
T  10282558 ttgtttggatactactatataaaaggtattttttgtaacaaaattagttcaatatttt 10282501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 37986062 - 37986005
Alignment:
Q  24 cttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttt 81  Q
    |||||| ||||| ||||| |||||| |||||||||| || ||| ||||||||||||||    
T  37986062 cttgttcggatacaactatataaaagggattttttgataaaaatttagttcaatcttt 37986005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 82
Target Start/End: Original strand, 1644573 - 1644605
Alignment:
Q  50 ggattttttgttacaaaattagttcaatctttt 82  Q
    |||||||||||||||||||||||||||| ||||    
T  1644573 ggattttttgttacaaaattagttcaatatttt 1644605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 11750058 - 11750126
Alignment:
Q  28 tttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttct 96  Q
    |||||||| ||||| |||||| |  |||||| ||||||||||| ||||||||||| | || ||||||||    
T  11750058 tttggatacaactatataaaatgatttttttattacaaaattacttcaatcttttgacatttattttct 11750126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 82
Target Start/End: Complemental strand, 24689174 - 24689146
Alignment:
Q  54 tttttgttacaaaattagttcaatctttt 82  Q
    |||||||||||||||||||||||||||||    
T  24689174 tttttgttacaaaattagttcaatctttt 24689146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 45447657 - 45447567
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgtt---acaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaa 112  Q
    ||||||||||| ||||| ||||||  |||||||| ||   |||||||||||||||| ||| |||  |||||||||| || ||||| |||||    
T  45447657 ttgtttggatacaactaaataaaagagattttttttttttacaaaattagttcaatttttaaaaccatattttctccttcctctaaaaaaa 45447567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 2e-26; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 25 - 162
Target Start/End: Original strand, 42676481 - 42676613
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatact 124  Q
    ||||||| ||| ||||| |||||| ||||||||||||||||||||||||||||||||||||  ||||||||||| | ||||  |||||| | ||||   |    
T  42676481 ttgtttgcatacaactatataaaagggattttttgttacaaaattagttcaatcttttaaatcatattttctctatcctct--aaaaaaaaatcta---t 42676575  T
Q  125 tttttgagaagctactcttaacagtttctcatttgaag 162  Q
    ||||||||||||| ||||| |||| |||||||||||||    
T  42676576 tttttgagaagctgctcttgacagcttctcatttgaag 42676613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 162
Target Start/End: Original strand, 30668860 - 30668991
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatact 124  Q
    ||||||||||| || || ||||| | |||||||||||||||||||||||||||||||||||  ||||||||||| | ||||| ||||||||   ||   |    
T  30668860 ttgtttggatacaattatataaacatgattttttgttacaaaattagttcaatcttttaaatcatattttctctctcctctaaaaaaaata---ta---t 30668953  T
Q  125 tttttgagaagctactcttaacagtttctcatttgaag 162  Q
    ||||||||||| | ||||||| || |||||||||||||    
T  30668954 tttttgagaagttgctcttaatagcttctcatttgaag 30668991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 162
Target Start/End: Original strand, 21479422 - 21479552
Alignment:
Q  25 ttgtttggatataactagataaaaaggatttttt-gttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatac 123  Q
    ||||||||||| ||||| |||||| ||||||||| ||||||||||||||||||| ||||||||||||  |||||| | ||||| ||||||   ||||       
T  21479422 ttgtttggatacaactatataaaagggattttttcgttacaaaattagttcaattttttaaaatata--ttctctctcctctaaaaaaaa---tcta--- 21479513  T
Q  124 ttttttgagaagctactcttaacagtttctcatttgaag 162  Q
    ||||||||||||||  ||||||||| |||||||||||||    
T  21479514 ttttttgagaagctggtcttaacagcttctcatttgaag 21479552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 162
Target Start/End: Complemental strand, 39844289 - 39844156
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatact 124  Q
    ||||||||||| ||||| |||||| ||||||| |||||||||||||||||||||| |||||  ||||||||||| | ||||| |||||| |  |||   |    
T  39844289 ttgtttggatacaactatataaaagggattttctgttacaaaattagttcaatctattaaacaatattttctctctcctcta-aaaaaaaaaacta---t 39844194  T
Q  125 tttttgagaagctactcttaacagtttctcatttgaag 162  Q
    ||||||||||||| |||||| ||| ||| |||||||||    
T  39844193 tttttgagaagctgctcttaccagcttcacatttgaag 39844156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 40662827 - 40662740
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaa 112  Q
    ||||||||||| ||||| |||||| |||||||||||||||||||||||||||| |||||||  ||||||||||| | ||||| |||||    
T  40662827 ttgtttggatacaactatataaaagggattttttgttacaaaattagttcaattttttaaatcatattttctctctcctctaaaaaaa 40662740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 25 - 158
Target Start/End: Original strand, 14787217 - 14787344
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatact 124  Q
    ||||||||||| |||||  |||||  |||||||||||||||||||| ||||||||||||||  ||||||||||| | ||||| ||||||   ||||   |    
T  14787217 ttgtttggatacaactatctaaaagagattttttgttacaaaattaattcaatcttttaaacaatattttctctctcctctaaaaaaaa---tcta---t 14787310  T
Q  125 tttttgagaagctactcttaacagtttctcattt 158  Q
    ||||||||||| | |||||||||| |||||||||    
T  14787311 tttttgagaagttgctcttaacagcttctcattt 14787344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 25 - 162
Target Start/End: Original strand, 30666277 - 30666408
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatact 124  Q
    ||||||| ||| || || |||||| |||||||||||||||||||| |||||||||||||||  ||||||||||| |  |||| ||||||||   ||   |    
T  30666277 ttgtttgaatacaaatatataaaagggattttttgttacaaaatttgttcaatcttttaaatcatattttctctctcatctaaaaaaaata---ta---t 30666370  T
Q  125 tttttgagaagctactcttaacagtttctcatttgaag 162  Q
    ||||||||||||| || ||||||| |||||||||||||    
T  30666371 tttttgagaagctgcttttaacagcttctcatttgaag 30666408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 43968632 - 43968563
Alignment:
Q  29 ttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctct 98  Q
    ||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||  |||||||||||    
T  43968632 ttggatacaactatataaaagggattttttgttacaaaattagttcaatcttttaaatcatattttctct 43968563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 162
Target Start/End: Original strand, 30620569 - 30620699
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatact 124  Q
    |||||| |||| ||||| ||||||| ||||||| ||||||||||||||||||||||||| |  ||||||||||| | ||||| |||||      |||| |    
T  30620569 ttgtttcgatacaactatataaaaatgatttttggttacaaaattagttcaatcttttatatcatattttctctctcctctaaaaaaa------tata-t 30620661  T
Q  125 tttttgagaagctactcttaacagtttctcatttgaag 162  Q
    ||||||||||| | |||||||||  |||||||||||||    
T  30620662 tttttgagaagttgctcttaacaacttctcatttgaag 30620699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 162
Target Start/End: Original strand, 30623190 - 30623320
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatact 124  Q
    |||||| |||| ||||| ||||||| ||||||| ||||||||||||||||||||||||| |  ||||||||||| | ||||| |||||      |||| |    
T  30623190 ttgtttcgatacaactatataaaaatgatttttggttacaaaattagttcaatcttttatatcatattttctctctcctctaaaaaaa------tata-t 30623282  T
Q  125 tttttgagaagctactcttaacagtttctcatttgaag 162  Q
    ||||||||||| | |||||||||  |||||||||||||    
T  30623283 tttttgagaagttgctcttaacaacttctcatttgaag 30623320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 114
Target Start/End: Original strand, 15458962 - 15459051
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaat 114  Q
    ||||||||||| ||||| ||||||  |||||||||||||||||||||||||||  || |||  ||||||||||||| ||||| |||||||    
T  15458962 ttgtttggatacaactatataaaagtgattttttgttacaaaattagttcaatacttaaaaccatattttctctttcctctaaaaaaaat 15459051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 30632219 - 30632292
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctct 98  Q
    ||||||||||| ||||| ||||||  |||||||||||||||||||| ||||||||||||||  |||||||||||    
T  30632219 ttgtttggatacaactatataaaagagattttttgttacaaaattaattcaatcttttaaatcatattttctct 30632292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 7495600 - 7495660
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaa 85  Q
    ||||||||||| ||||| |||||| |||||||||||||||||||| |||||||||||||||    
T  7495600 ttgtttggatacaactatataaaagggattttttgttacaaaatttgttcaatcttttaaa 7495660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 52 - 105
Target Start/End: Original strand, 43004941 - 43004994
Alignment:
Q  52 attttttgttacaaaattagttcaatcttttaaaatatattttctctttgctct 105  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||| ||||    
T  43004941 attttttgttacaaaattagttcaatcttttaaatcatattttctctttcctct 43004994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 32 - 158
Target Start/End: Original strand, 20612717 - 20612836
Alignment:
Q  32 gatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatacttttttga 131  Q
    |||| ||||| |||||| |||||||||||| ||||||||||| |||||||||||  ||||||| ||| | || || |||||    ||||   ||||||||    
T  20612717 gatacaactatataaaagggattttttgtttcaaaattagtttaatcttttaaaccatattttttctctcctttaaaaaaa----tcta---ttttttga 20612809  T
Q  132 gaagctactcttaacagtttctcattt 158  Q
    |||||| |||||||||| |||||||||    
T  20612810 gaagctgctcttaacagattctcattt 20612836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 43968285 - 43968226
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaa 84  Q
    ||||||||||| ||| | ||||||  ||||||||||||||||||||||||||||||||||    
T  43968285 ttgtttggatacaacgatataaaagagattttttgttacaaaattagttcaatcttttaa 43968226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 162
Target Start/End: Original strand, 3256148 - 3256251
Alignment:
Q  53 ttttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatacttttttgagaagctactcttaacagtttc 152  Q
    |||||||||| |||||| |||||||||||||||  ||||||||||| | || || ||||||   ||||   |||||| ||||||| |||||||||| |||    
T  3256148 ttttttgttaaaaaattggttcaatcttttaaatcatattttctctctcctataaaaaaaa---tcta---ttttttaagaagctgctcttaacagcttc 3256241  T
Q  153 tcatttgaag 162  Q
    ||||||||||    
T  3256242 tcatttgaag 3256251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 36950405 - 36950336
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatatttt 94  Q
    ||||||||||  ||||| |||||| |||||||||||||||||||||||| ||| |||||||  |||||||    
T  36950405 ttgtttggattcaactatataaaatggattttttgttacaaaattagtttaattttttaaacaatatttt 36950336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 7074968 - 7074897
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttct 96  Q
    ||||| ||||| ||||| ||||||| ||||||||| ||||||||||||| ||| |||||||  |||||||||    
T  7074968 ttgttaggatacaactatataaaaatgattttttgatacaaaattagttaaattttttaaatcatattttct 7074897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 115
Target Start/End: Original strand, 1826772 - 1826862
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaata 115  Q
    ||||||||||  | ||| ||||||  |||||||| |||||||||||||||||||||| ||   ||||||||||| | ||||| ||||||||    
T  1826772 ttgtttggatccagctatataaaagcgattttttattacaaaattagttcaatctttaaattcatattttctctctcctctaaaaaaaata 1826862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 9420273 - 9420347
Alignment:
Q  25 ttgtttggatataactagataaaaaggatttt-ttgttacaaaattagttcaatcttttaaaatatattttctct 98  Q
    ||||||||||| ||||| |||||| ||||||| ||||||||||||||||| ||| |||||||  |||||| ||||    
T  9420273 ttgtttggatacaactatataaaatggatttttttgttacaaaattagtttaatattttaaaccatatttcctct 9420347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 21479225 - 21479275
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttca 75  Q
    ||||||||||| ||||| |||||| | ||||||||||||||||||||||||    
T  21479225 ttgtttggatacaactacataaaaggcattttttgttacaaaattagttca 21479275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 3197007 - 3197064
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatctttt 82  Q
    |||||| |||| | ||| ||||||  ||||||||||||||||||||||||||||||||    
T  3197007 ttgttttgatacagctatataaaagtgattttttgttacaaaattagttcaatctttt 3197064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 98
Target Start/End: Original strand, 45654973 - 45655020
Alignment:
Q  51 gattttttgttacaaaattagttcaatcttttaaaatatattttctct 98  Q
    ||||||||||||||||||||||||||| |||| || | ||||||||||    
T  45654973 gattttttgttacaaaattagttcaattttttgaattgtattttctct 45655020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 97
Target Start/End: Original strand, 31667564 - 31667608
Alignment:
Q  53 ttttttgttacaaaattagttcaatcttttaaaatatattttctc 97  Q
    |||||| ||||| ||||||||||||||||||||  ||||||||||    
T  31667564 tttttttttacagaattagttcaatcttttaaaccatattttctc 31667608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 36)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 25 - 161
Target Start/End: Original strand, 1030396 - 1030528
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatact 124  Q
    ||||||||||| ||||| ||||||  ||||||||||||||||||||||||||||||||||    |||||||||| | ||||| |||||| | ||||   |    
T  1030396 ttgtttggatacaactatataaaagtgattttttgttacaaaattagttcaatcttttaactcttattttctctctcctcta-aaaaaaaaatcta---t 1030491  T
Q  125 tttttgagaagctactcttaacagtttctcatttgaa 161  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  1030492 tttttgagaagctgctcttaacagcttctcatttgaa 1030528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 25 - 162
Target Start/End: Complemental strand, 35308215 - 35308082
Alignment:
Q  25 ttgtttggatataactagataaaaaggatttttt--gttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctata 122  Q
    ||||||||||| ||||| |||||| |||||||||  |||||||||||||||||||||||||||  ||||||||||| | ||||| ||||||   ||||      
T  35308215 ttgtttggatacaactatataaaagggattttttttgttacaaaattagttcaatcttttaaatcatattttctctctcctctaaaaaaaa---tcta-- 35308121  T
Q  123 cttttttgagaagctactcttaacagtttctcatttgaag 162  Q
     |||||||||||||| |||||||||  |||||||||||||    
T  35308120 -ttttttgagaagctgctcttaacaacttctcatttgaag 35308082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 13916548 - 13916617
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatatttt 94  Q
    ||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  13916548 ttgtttggatacaactatataaaagggattttttgttacaaaattagttcaatcttttaaaacatatttt 13916617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 25 - 162
Target Start/End: Complemental strand, 5765448 - 5765311
Alignment:
Q  25 ttgtttggatataactagataaaaaggatttttt---gttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctat 121  Q
    |||||| |||| ||||| |||||| |||||||||   ||| |||||||||||||||||||||||| ||||||||||| | ||||| |||||| |  |||     
T  5765448 ttgtttagataaaactatataaaatggatttttttttgttgcaaaattagttcaatcttttaaaaaatattttctctctcctctaaaaaaaaaaaacta- 5765350  T
Q  122 acttttttgagaagctactcttaacagtttctcatttgaag 162  Q
      |||| ||||||||| |||||||||| |||||||||||||    
T  5765349 --ttttctgagaagctgctcttaacagcttctcatttgaag 5765311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 113
Target Start/End: Original strand, 6007687 - 6007775
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaa 113  Q
    ||||||| ||| ||||| |||||| |||||||||||| |||||||||||||||||||||||  ||||||||||| | ||||| ||||||    
T  6007687 ttgtttgaatacaactatataaaagggattttttgttgcaaaattagttcaatcttttaaatcatattttctctctcctctaaaaaaaa 6007775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 113
Target Start/End: Original strand, 27963970 - 27964058
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaa 113  Q
    ||||||||||| ||||| ||||||   ||||||||||||||||||||||||| |||||||| |||||||||||| | ||||| ||||||    
T  27963970 ttgtttggatacaactatataaaagaaattttttgttacaaaattagttcaaccttttaaattatattttctctctcctctaaaaaaaa 27964058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 27881328 - 27881401
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctct 98  Q
    ||||||||||| ||||| ||||||   ||||||||||||||||||||||||| |||||||| ||||||||||||    
T  27881328 ttgtttggatacaactatataaaagaaattttttgttacaaaattagttcaaccttttaaattatattttctct 27881401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 27917551 - 27917624
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctct 98  Q
    ||||||||||| ||||| ||||||   ||||||||||||||||||||||||| |||||||| ||||||||||||    
T  27917551 ttgtttggatacaactatataaaagaaattttttgttacaaaattagttcaaccttttaaattatattttctct 27917624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 28021509 - 28021582
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctct 98  Q
    ||||||||||| ||||| ||||||   ||||||||||||||||||||||||| |||||||| ||||||||||||    
T  28021509 ttgtttggatacaactatataaaagaaattttttgttacaaaattagttcaaccttttaaattatattttctct 28021582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 40737441 - 40737514
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctct 98  Q
    ||||||||||| ||||| ||||||   |||||||||||||||||||||||||||| |||||| |||||||||||    
T  40737441 ttgtttggatacaactatataaaagaaattttttgttacaaaattagttcaatctcttaaaaaatattttctct 40737514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 5424786 - 5424874
Alignment:
Q  25 ttgtttggatataactagataaaaaggatttt-ttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaa 112  Q
    ||||||||||| ||||| |||||| ||||||| |||||||||||||||||||||||||||||  |||||||| || | ||||| |||||    
T  5424786 ttgtttggatacaactatataaaagggatttttttgttacaaaattagttcaatcttttaaagcatattttcactctcctctaaaaaaa 5424874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 5424565 - 5424478
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaa 112  Q
    ||||||||||| ||||| ||||||  || |||||||||||||||| |||||||||||||||  ||||||||||| | ||||| |||||    
T  5424565 ttgtttggatacaactatataaaagagactttttgttacaaaatttgttcaatcttttaaaccatattttctctatcctctaaaaaaa 5424478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 115
Target Start/End: Original strand, 17575213 - 17575304
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttg-ttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaata 115  Q
    ||||||||||| ||||| ||||||  ||||||||  ||||||||||||||||||||||||||  ||||||||||| | |||| |||||||||    
T  17575213 ttgtttggatacaactatataaaagagatttttttattacaaaattagttcaatcttttaaatcatattttctctgtcctctgcaaaaaata 17575304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 27964830 - 27964889
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaa 84  Q
    ||||||||||| ||||| |||||| |||||||||||||||||| ||||||||||||||||    
T  27964830 ttgtttggatacaactatataaaagggattttttgttacaaaactagttcaatcttttaa 27964889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 158
Target Start/End: Complemental strand, 1153744 - 1153646
Alignment:
Q  53 ttttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatacttttttgagaagctactcttaacagtttc 152  Q
    |||||||||||||||||||||||||||||||||  ||||||||||| | ||||| |||||    ||||   ||||||||| |||| |||||||||| |||    
T  1153744 ttttttgttacaaaattagttcaatcttttaaatcatattttctctctcctctaaaaaaa----tcta---ttttttgagtagctgctcttaacagcttc 1153652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 162
Target Start/End: Original strand, 17073302 - 17073433
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatact 124  Q
    |||||||||||||||    ||||| | ||||||||||||||||||||||||||||||||||  ||||||||||| | ||||| | |||||      |  |    
T  17073302 ttgtttggatataaccgtgtaaaatgaattttttgttacaaaattagttcaatcttttaaacaatattttctctctcctctaaacaaaat------ttat 17073395  T
Q  125 tttttgagaagctactcttaacagtttctcatttgaag 162  Q
    |||||||||  || |||||||||| |||||||||||||    
T  17073396 tttttgagatactgctcttaacagcttctcatttgaag 17073433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 162
Target Start/End: Complemental strand, 17574968 - 17574837
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatact 124  Q
    |||||||||||||||    ||||| | ||||||||||||||||||||||||||||||||||  ||||||||||| | ||||| | |||||      |  |    
T  17574968 ttgtttggatataaccgtgtaaaatgaattttttgttacaaaattagttcaatcttttaaacaatattttctctctcctctaaacaaaat------ttat 17574875  T
Q  125 tttttgagaagctactcttaacagtttctcatttgaag 162  Q
    |||||||||  || |||||||||| |||||||||||||    
T  17574874 tttttgagatactgctcttaacagcttctcatttgaag 17574837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 342757 - 342700
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatctttt 82  Q
    ||||||||||| ||||| ||||||  ||||||||||||||||||||||||||||||||    
T  342757 ttgtttggatacaactatataaaagagattttttgttacaaaattagttcaatctttt 342700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 40796258 - 40796166
Alignment:
Q  25 ttgtttggatataactagataaaaagga--ttttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaata 115  Q
    ||||||||||| | ||| ||||||| ||  |||||| ||||||||||||||||||||||||||  ||||||||||| | ||||| ||||||||    
T  40796258 ttgtttggatacagctatataaaaatgaattttttttttacaaaattagttcaatcttttaaaccatattttctctctcctctaaaaaaaata 40796166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 17073057 - 17072969
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttg-ttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaa 112  Q
    ||||||||||| ||||| ||||||  ||||||||  ||||||||||||||||||||||||||  ||||||||||| | |||| ||||||    
T  17073057 ttgtttggatacaactatataaaagagatttttttattacaaaattagttcaatcttttaaatcatattttctctgtcctctgcaaaaa 17072969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 5764896 - 5764983
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaa 112  Q
    ||||||||||| ||||| |||||| ||||||||||||||||| ||| |||||| ||||||   ||||||||||| | ||||| |||||    
T  5764896 ttgtttggatacaactatataaaagggattttttgttacaaagttacttcaatattttaagcaatattttctctctcctctaaaaaaa 5764983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 113
Target Start/End: Original strand, 8377046 - 8377108
Alignment:
Q  51 gattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaa 113  Q
    |||||||||||| ||||||||||||||||||| ||  |||||||||||||  |||||||||||    
T  8377046 gattttttgttataaaattagttcaatcttttgaaccatattttctctttcttctacaaaaaa 8377108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 15199745 - 15199818
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctct 98  Q
    ||||||| ||| ||||| |||||| |  |||||| ||||||||||||||||||||||||||  |||||||||||    
T  15199745 ttgtttgaatacaactatataaaaggagttttttattacaaaattagttcaatcttttaaataatattttctct 15199818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 28152484 - 28152553
Alignment:
Q  28 tttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctc 97  Q
    |||||||| ||||| ||||||  |||| ||||||||||||||||||||||||||| | || |||||||||    
T  28152484 tttggatacaactatataaaatagattatttgttacaaaattagttcaatcttttgatatttattttctc 28152553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 28828109 - 28828037
Alignment:
Q  25 ttgtttggatataactagataaaaaggatttttt--gttacaaaattagttcaatcttttaaaatatattttc 95  Q
    ||||||||||| ||||| |||||| |||||||||  |||||||| ||||||||||||||||||  ||||||||    
T  28828109 ttgtttggatacaactatataaaagggatttttttcgttacaaagttagttcaatcttttaaatcatattttc 28828037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 82
Target Start/End: Original strand, 1580312 - 1580351
Alignment:
Q  43 ataaaaaggattttttgttacaaaattagttcaatctttt 82  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  1580312 ataaaatggattttttgttacaaaattagttcaatctttt 1580351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 27882195 - 27882254
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaa 84  Q
    ||||||||||| ||||| ||||||  ||||||||||||||||| || |||||||||||||    
T  27882195 ttgtttggatacaactatataaaagagattttttgttacaaaactaattcaatcttttaa 27882254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 28022375 - 28022434
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaa 84  Q
    ||||||||||| ||||| ||||||  ||||||||||||||||| || |||||||||||||    
T  28022375 ttgtttggatacaactatataaaagagattttttgttacaaaactaattcaatcttttaa 28022434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 162
Target Start/End: Complemental strand, 27882527 - 27882395
Alignment:
Q  25 ttgtttggatataactagataaaaaggatttt-ttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatac 123  Q
    ||||||||| | | ||| ||||||  |||||| |||||||||||||||||||||||||  |   | ||||||||| | ||||| |||||||   ||||      
T  27882527 ttgtttggaaacagctatataaaagcgattttattgttacaaaattagttcaatctttagatccacattttctctctcctctaaaaaaaat---ctat-- 27882433  T
Q  124 ttttttgagaagctactcttaacagtttctcatttgaag 162  Q
     |||||||||||||||||| ||||| |||||||||||||    
T  27882432 -tttttgagaagctactctcaacagcttctcatttgaag 27882395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 162
Target Start/End: Complemental strand, 28022707 - 28022575
Alignment:
Q  25 ttgtttggatataactagataaaaaggatttt-ttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatac 123  Q
    ||||||||| | | ||| ||||||  |||||| |||||||||||||||||||||||||  |   | ||||||||| | ||||| |||||||   ||||      
T  28022707 ttgtttggaaacagctatataaaagcgattttattgttacaaaattagttcaatctttagatccacattttctctctcctctaaaaaaaat---ctat-- 28022613  T
Q  124 ttttttgagaagctactcttaacagtttctcatttgaag 162  Q
     |||||||||||||||||| ||||| |||||||||||||    
T  28022612 -tttttgagaagctactctcaacagcttctcatttgaag 28022575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 113
Target Start/End: Complemental strand, 32693625 - 32693537
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaa 113  Q
    |||||| |||||||||| |||||  | ||||||||| | ||||||||||||||| |||  |  ||||||||||| | ||||||||||||    
T  32693625 ttgttttgatataactatataaacggaattttttgtaagaaaattagttcaatcatttgtaccatattttctctctcctctacaaaaaa 32693537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 162
Target Start/End: Complemental strand, 27965069 - 27965031
Alignment:
Q  124 ttttttgagaagctactcttaacagtttctcatttgaag 162  Q
    ||||||||||||||||||| ||||| |||||||||||||    
T  27965069 ttttttgagaagctactctcaacagcttctcatttgaag 27965031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 6008044 - 6008097
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatc 78  Q
    ||||||| ||| || || |||||| ||||||||||||||||||||| |||||||    
T  6008044 ttgtttgcatacaattatataaaagggattttttgttacaaaattatttcaatc 6008097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 24981542 - 24981579
Alignment:
Q  44 taaaaaggattttttgttacaaaattagttcaatcttt 81  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  24981542 taaaagggattttttgttacaaaattaattcaatcttt 24981579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 82
Target Start/End: Original strand, 32855173 - 32855202
Alignment:
Q  53 ttttttgttacaaaattagttcaatctttt 82  Q
    ||||||||||||||||||||||||||||||    
T  32855173 ttttttgttacaaaattagttcaatctttt 32855202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 36804094 - 36804123
Alignment:
Q  1 ttcaaaggtaatttagaaaaaaccttgttt 30  Q
    ||||||||||||||||||||||||||||||    
T  36804094 ttcaaaggtaatttagaaaaaaccttgttt 36804123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 21980923 - 21981010
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaa 112  Q
    ||||||||||| ||||| |||||| | ||||||||||||||||||||||||||||||||||| ||||||||||| | ||||| |||||    
T  21980923 ttgtttggatacaactatataaaaggaattttttgttacaaaattagttcaatcttttaaaaaatattttctctctcctctaaaaaaa 21981010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 25 - 114
Target Start/End: Complemental strand, 2258778 - 2258689
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaat 114  Q
    |||||| |||| ||||| ||||||  |||||||||||||||||||||||||||||||||||  ||||||||||| | ||||| |||||||    
T  2258778 ttgttttgatacaactatataaaagagattttttgttacaaaattagttcaatcttttaaatcatattttctctctcctctaaaaaaaat 2258689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 50 - 162
Target Start/End: Original strand, 26209163 - 26209269
Alignment:
Q  50 ggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatacttttttgagaagctactcttaacagt 149  Q
    |||||||||||||||||||||||| ||| ||||||| | |||||||||| | ||||| ||||||   ||||   |||||||||||||| ||||||||||     
T  26209163 ggattttttgttacaaaattagtttaatattttaaattctattttctctctcctctaaaaaaaa---tcta---ttttttgagaagctgctcttaacagc 26209256  T
Q  150 ttctcatttgaag 162  Q
    |||||||||||||    
T  26209257 ttctcatttgaag 26209269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 28 - 147
Target Start/End: Complemental strand, 7204872 - 7204759
Alignment:
Q  28 tttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatactttt 127  Q
    |||||||| ||||| ||||||  |||||||||||||||||||||||||||||||||||  ||||||| ||| | ||||| ||||||   ||||   ||||    
T  7204872 tttggatacaactatataaaagagattttttgttacaaaattagttcaatcttttaaatcatattttttctctcctctaaaaaaaa---tcta---tttt 7204779  T
Q  128 ttgagaagctactcttaaca 147  Q
    |||||||||| |||||||||    
T  7204778 ttgagaagctgctcttaaca 7204759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 115
Target Start/End: Original strand, 7858507 - 7858561
Alignment:
Q  61 tacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaata 115  Q
    ||||||||||||| |||||||||||| ||||||||||||| ||||| ||||||||    
T  7858507 tacaaaattagtttaatcttttaaaacatattttctctttcctctaaaaaaaata 7858561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 161
Target Start/End: Complemental strand, 9740646 - 9740531
Alignment:
Q  37 aactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatacttttttgagaagc 136  Q
    ||||| ||||||  |||||||||||||||||||||||||||   || |    |||||||||||| ||||| |||||||   ||||   ||||||| ||||    
T  9740646 aactatataaaagagattttttgttacaaaattagttcaat---ttgacccttattttctctttcctctaaaaaaaat---ctat---tttttgacaagc 9740556  T
Q  137 tactcttaacagtttctcatttgaa 161  Q
    ||||||||||||||||| |||||||    
T  9740555 tactcttaacagtttctgatttgaa 9740531  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 10780246 - 10780177
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatatttt 94  Q
    ||||||| ||| ||||| ||||||  |||||||||||| |||| |||||||||||||||||  |||||||    
T  10780246 ttgtttgtatacaactatataaaatagattttttgttagaaaactagttcaatcttttaaaccatatttt 10780177  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 33438680 - 33438752
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctct 98  Q
    ||||||| ||| ||||| ||||||  ||||||| |||| ||||||||||||||||||||||  |||||||||||    
T  33438680 ttgtttgaatacaactatataaaagagattttt-gttaaaaaattagttcaatcttttaaaccatattttctct 33438752  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 162
Target Start/End: Complemental strand, 3307024 - 3306922
Alignment:
Q  54 tttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatacttttttgagaagctactcttaacagtttct 153  Q
    ||||| |||||||| ||||||||||||||||   ||||||||||| |  |||| | |||||   ||||   ||||||||||||| |||||||||| ||||    
T  3307024 ttttttttacaaaactagttcaatcttttaattcatattttctctctcttctaaacaaaat---ctat---tttttgagaagctgctcttaacagcttct 3306931  T
Q  154 catttgaag 162  Q
    |||||||||    
T  3306930 catttgaag 3306922  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 26001323 - 26001257
Alignment:
Q  28 tttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatatttt 94  Q
    |||||||| ||||| ||||||  |||||||||||| |||||||||| ||| |||| || ||||||||    
T  26001323 tttggatacaactatataaaagagattttttgttaaaaaattagtttaatattttgaattatatttt 26001257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 5679115 - 5679070
Alignment:
Q  53 ttttttgttacaaaattagttcaatcttttaaaatatattttctct 98  Q
    |||||||||| ||||||||||||||||||||||  || ||||||||    
T  5679115 ttttttgttataaaattagttcaatcttttaaaccattttttctct 5679070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 82
Target Start/End: Original strand, 32952541 - 32952577
Alignment:
Q  46 aaaaggattttttgttacaaaattagttcaatctttt 82  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  32952541 aaaaagattttttgttacaaaattagatcaatctttt 32952577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0224 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 35 - 114
Target Start/End: Original strand, 22012 - 22091
Alignment:
Q  35 ataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaat 114  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||  |||||||||||| | ||||| |||||||    
T  22012 ataactatataaaagggattttttgttacaaaattagttcaatcttttaatctatattttctctctcctctaaaaaaaat 22091  T

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Target: scaffold0224; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 21768 - 21696
Alignment:
Q  25 ttgtttggatataactagataaaaaggatttttt-gttacaaaattagttcaatcttttaaaatatattttct 96  Q
    |||||| |||| | ||| |||||| ||||||||| || ||||||||||||||||||||||||  |||||||||    
T  21768 ttgtttagatacagctatataaaatggatttttttgtgacaaaattagttcaatcttttaaacaatattttct 21696  T

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Target: scaffold0024 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 162
Target Start/End: Complemental strand, 150268 - 150138
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaaaattagttcaatcttttaaaatatattttctctttgctctacaaaaaatactctatact 124  Q
    ||||||||||  || || |||||| ||||||||| | ||||||||||||||||||||||||  ||||||||||| | ||||| |||||| |   ||        
T  150268 ttgtttggatgcaattatataaaagggattttttataacaaaattagttcaatcttttaaaccatattttctctctcctctaaaaaaaaaa---ta---- 150176  T
Q  125 tttttgagaagctactcttaacagtttctcatttgaag 162  Q
    ||||||||||| ||||||||| || |||||||||||||    
T  150175 tttttgagaagatactcttaatagcttctcatttgaag 150138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0376 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 85
Target Start/End: Complemental strand, 1990 - 1955
Alignment:
Q  50 ggattttttgttacaaaattagttcaatcttttaaa 85  Q
    |||||||||||||||||||||||| |||||||||||    
T  1990 ggattttttgttacaaaattagtttaatcttttaaa 1955  T

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Target: scaffold0267 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 3246 - 3337
Alignment:
Q  25 ttgtttggatataactagataaaaaggattttttgttacaa----aattagttcaatcttttaaaatatattttctctttgctctacaaaaa 112  Q
    ||||||||||| ||||| ||||||  |||||||||||||||    ||||||||||||||||| |   ||||||||||| | ||||| |||||    
T  3246 ttgtttggatacaactatataaaagtgattttttgttacaaaattaattagttcaatcttttgactcatattttctctcttctctaaaaaaa 3337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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