View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7756_low_3 (Length: 373)

Name: NF7756_low_3
Description: NF7756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7756_low_3
NF7756_low_3
[»] chr4 (1 HSPs)
chr4 (21-363)||(17384818-17385164)
[»] chr5 (1 HSPs)
chr5 (21-363)||(27708481-27708827)
[»] scaffold0537 (1 HSPs)
scaffold0537 (21-363)||(9980-10326)
[»] chr7 (1 HSPs)
chr7 (21-363)||(5885120-5885465)
[»] chr1 (2 HSPs)
chr1 (155-363)||(51511337-51511544)
chr1 (21-89)||(51511257-51511325)
[»] chr6 (3 HSPs)
chr6 (20-136)||(26137390-26137503)
chr6 (250-291)||(25578948-25578989)
chr6 (250-291)||(26137255-26137296)


Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 21 - 363
Target Start/End: Original strand, 17384818 - 17385164
Alignment:
Q  21 tctaaatcaatgaccttgggagatttgatccaattttgggtgcagattaaagcttcaacaatagagggattcaatgaactgcgaaacgagtcaaggactc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  17384818 tctaaatcaatgaccttgggagatttgatccaattttgggtgcagatcaaagcttcaacaatagagggatttaatgaactgcgaaacgagtcaaggactc 17384917  T
Q  121 gatctccggtactaaaagctaactc-----atattatggatacatgaatagacaatacatctctagctatgtgggaaagaatatgatattcatttgcgtt 215  Q
    || |||| |||||||||||| ||||     |||   |||||||| |||||||||||| |||||  |||||||||||||||| |||||||| ||||| |||    
T  17384918 gacctccagtactaaaagctgactcagaagatacggtggatacaggaatagacaatatatctcgcgctatgtgggaaagaacatgatatttatttgagtt 17385017  T
Q  216 tactttccaaaaagtgagaatgtttaaagtaaaaacatcatcttcaggaccatcctccaaataccttaccaactcannnnnnnngtacctaccgttgttt 315  Q
    |||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||| ||||||| ||||||||        |||||| |||||||||    
T  17385018 tactttccaaaaagtgagaatgttaaatgtagaaacatcatcttcaggaccatcctccagatacctttccaactca-tttttttgtacctcccgttgttt 17385116  T
Q  316 tttcttcagtttcattctaaacattttgtctcagtctccatcttcttc 363  Q
    |||||||| | ||||||| |||||| |||| |||||| ||||||||||    
T  17385117 tttcttcactctcattctgaacattgtgtcccagtcttcatcttcttc 17385164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 183; Significance: 6e-99; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 21 - 363
Target Start/End: Original strand, 27708481 - 27708827
Alignment:
Q  21 tctaaatcaatgaccttgggagatttgatccaattttgggtgcagattaaagcttcaacaatagagggattcaatgaactgcgaaacgagtcaaggactc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  27708481 tctaaatcaatgaccttgggagatttgatccaattttgggtgcagatcaaagcttcaacagtagagggatttaatgaactgcgaaacgagtcaaggactc 27708580  T
Q  121 gatctccggtactaaaagctaactc-----atattatggatacatgaatagacaatacatctctagctatgtgggaaagaatatgatattcatttgcgtt 215  Q
    || |||| |||||||||||| ||||     |||   |||||||| |||||||||||| |||||  |||||| ||||||||| |||||||| ||||| |||    
T  27708581 gacctccagtactaaaagctgactcagaagatacggtggatacaggaatagacaatatatctcgtgctatgcgggaaagaacatgatatttatttgagtt 27708680  T
Q  216 tactttccaaaaagtgagaatgtttaaagtaaaaacatcatcttcaggaccatcctccaaataccttaccaactcannnnnnnngtacctaccgttgttt 315  Q
    |||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||| ||||||| ||||||||        |||||| |||||||||    
T  27708681 tactttccaaaaagtgagaatgttaaatgtagaaacatcatcttcaggaccatcctccagatacctttccaactca-tttatttgtacctcccgttgttt 27708779  T
Q  316 tttcttcagtttcattctaaacattttgtctcagtctccatcttcttc 363  Q
    |||||||| | ||||||| |||||| |||| |||||| ||||||||||    
T  27708780 tttcttcactctcattctgaacattgtgtcccagtcttcatcttcttc 27708827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0537 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: scaffold0537
Description:

Target: scaffold0537; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 21 - 363
Target Start/End: Complemental strand, 10326 - 9980
Alignment:
Q  21 tctaaatcaatgaccttgggagatttgatccaattttgggtgcagattaaagcttcaacaatagagggattcaatgaactgcgaaacgagtcaaggactc 120  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||| |||||||||| |||||||| ||||||||||||| |||||    
T  10326 tctaaatcaatgaccttggtagatttggtccaattttgggtgcagatcaaagcttcaacagtagagggatttaatgaactacgaaacgagtcaaagactc 10227  T
Q  121 gatctccggtactaaaagctaactc-----atattatggatacatgaatagacaatacatctctagctatgtgggaaagaatatgatattcatttgcgtt 215  Q
    || |||| |||||||||||| ||||     |||   |||||||| ||||| |||||| |||||  |||||| || |||||| |||||||| ||||| |||    
T  10226 gacctccagtactaaaagctgactcagaagatacggtggatacaggaataaacaatatatctcgtgctatgcggaaaagaacatgatatttatttgagtt 10127  T
Q  216 tactttccaaaaagtgagaatgtttaaagtaaaaacatcatcttcaggaccatcctccaaataccttaccaactcannnnnnnngtacctaccgttgttt 315  Q
    |||||||||||| ||||||||||| || ||| |||||||||||||| |||||||||| | |||||||  |||||||        |||||| |||||||||    
T  10126 tactttccaaaacgtgagaatgttaaatgtagaaacatcatcttcaagaccatcctctagataccttttcaactca-tttttttgtacctcccgttgttt 10028  T
Q  316 tttcttcagtttcattctaaacattttgtctcagtctccatcttcttc 363  Q
    |||||||| | ||||||| |||||| ||||  ||||| | ||||||||    
T  10027 tttcttcactctcattctgaacattgtgtcctagtcttcgtcttcttc 9980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 21 - 363
Target Start/End: Complemental strand, 5885465 - 5885120
Alignment:
Q  21 tctaaatcaatgaccttgggagatttgatccaattttgggtgcagattaaagcttcaacaatagagggattcaatgaactgcgaaacgagtcaaggactc 120  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||| |||| || |||| |||||||||| |||||||||||||||| |||||||||||    
T  5885465 tctaaatcaatgacattgggagatttgattcaattttgggtgcagatcaaagttttaacagtagagggatttaatgaactgcgaaacgtgtcaaggactc 5885366  T
Q  121 gatctccggtactaaaagctaactc-----atattatggatacatgaatagacaatacatctctagctatgtgggaaagaatatgatattcatttgcgtt 215  Q
    || |||| |||||||||||| ||||     |||   ||| |||| |||||||||||| |||||  |||||| || ||| || ||| |||| |||||  ||    
T  5885365 gacctccagtactaaaagctgactcagaagataccgtggttacaggaatagacaatatatctcgtgctatgcggaaaataacatgctatttatttgattt 5885266  T
Q  216 tactttccaaaaagtgagaatgtttaaagtaaaaacatcatcttcaggaccatcctccaaataccttaccaactcannnnnnnngtacctaccgttgttt 315  Q
    |||||||||||||||||||||||| || ||| ||||||||||||||||| ||||||||||||||||| ||||||||        |||||| |||||||||    
T  5885265 tactttccaaaaagtgagaatgttaaatgtagaaacatcatcttcagga-catcctccaaatacctttccaactca-tttttttgtacctcccgttgttt 5885168  T
Q  316 tttcttcagtttcattctaaacattttgtctcagtctccatcttcttc 363  Q
    |||||||| | ||||||   ||||| |||| | |||| ||||||||||    
T  5885167 tttcttcactctcattccgcacattgtgtcccggtcttcatcttcttc 5885120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 155 - 363
Target Start/End: Original strand, 51511337 - 51511544
Alignment:
Q  155 atacatgaatagacaatacatctctagctatgtgggaaagaatatgatattcatttgcgtttactttccaaaaagtgagaatgtttaaagtaaaaacatc 254  Q
    ||||| |||||||||||| ||| |  |||||| ||||||||| |||||||| ||||| ||||||||||||||||||||||||||| ||  ||||||||||    
T  51511337 atacaggaatagacaatatatcgcgtgctatgcgggaaagaacatgatatttatttgagtttactttccaaaaagtgagaatgttaaatctaaaaacatc 51511436  T
Q  255 atcttcaggaccatcctccaaataccttaccaactcannnnnnnngtacctaccgttgttttttcttcagtttcattctaaacattttgtctcagtctcc 354  Q
    |||||||||||||||||||| ||||||| ||||||||        |||||| | ||||||||||||||| ||||||||| |||||| |||| |||||| |    
T  51511437 atcttcaggaccatcctccagatacctttccaactca-attttttgtacctccagttgttttttcttcactttcattctgaacattgtgtcccagtcttc 51511535  T
Q  355 atcttcttc 363  Q
    |||||||||    
T  51511536 atcttcttc 51511544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 51511257 - 51511325
Alignment:
Q  21 tctaaatcaatgaccttgggagatttgatccaattttgggtgcagattaaagcttcaacaatagaggga 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  51511257 tctaaatcaatgaccttgggagatttgatccaattttgggtgcagatcaaagcttcaacaatagaggga 51511325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 26137503 - 26137390
Alignment:
Q  20 ttctaaatcaatgaccttgggagatttgatccaattttgggtgcagattaaagcttcaacaatagagggattcaatgaactgcgaaacgagtcaaggact 119  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||| || |||||||||||| ||||  |||| ||| |||| | |||||||| |||||||    
T  26137503 ttctaaatcaatgaccttgagagatttgatccaatttggggtgca-atcaaagcttcaacagtaga--gatttaattaactaccaaacgagtaaaggact 26137407  T
Q  120 cgatctccggtactaaa 136  Q
    ||| |||| ||||||||    
T  26137406 cgacctccagtactaaa 26137390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 291
Target Start/End: Complemental strand, 25578989 - 25578948
Alignment:
Q  250 acatcatcttcaggaccatcctccaaataccttaccaactca 291  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  25578989 acatcatcttcacgaccatcctccaaataccttaccaactca 25578948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 291
Target Start/End: Complemental strand, 26137296 - 26137255
Alignment:
Q  250 acatcatcttcaggaccatcctccaaataccttaccaactca 291  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  26137296 acatcatcttcacgaccatcctccaaataccttaccaactca 26137255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University