View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7756_low_4 (Length: 345)
Name: NF7756_low_4
Description: NF7756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7756_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 2 - 334
Target Start/End: Complemental strand, 8865643 - 8865310
Alignment:
| Q |
2 |
tgagatggacatcagcaagcaacctacacaacaagaagcaagtatgagtccaggaaaaggaaaagtgcagcggcggagcttgaatagtttaatgaggaag |
101 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8865643 |
tgagatgaacatcagcaagcaacctacacaacaagaagcaagtatgagtccaggaaaaggaaaagtgcagcggcggagcttgaatagtttaatgaggaag |
8865544 |
T |
|
| Q |
102 |
cgaaagatatacaaccacataataaaattatttatactgaatatgtaataaaatgaatgttacaacacagcaagt-ctattacgttttataaaatctaga |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8865543 |
cgaaagatatacaaccacataataaaattatttataccaaatatgtaataaaatgaatgttacaacacagcaagtactattacgttttataaaatctaga |
8865444 |
T |
|
| Q |
201 |
aaagtactattaagttttcagtatcacacagcaagtacagaccatcaagatcttaagcagtttatttagaactttgaaaattgaaaaaagcacagtacct |
300 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8865443 |
aaagtactattaagttttcagtatcacacagcaagaatagaccatcaagatcttaagcagtttatttagaactttgaaaattgaaaaaagcacagtacct |
8865344 |
T |
|
| Q |
301 |
ctgcctaaatgttgtgttgcgaacttcctttctc |
334 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |
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| T |
8865343 |
ctgcctaaatgttgtgttccgaacttcctttctc |
8865310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 2 - 334
Target Start/End: Original strand, 11127114 - 11127448
Alignment:
| Q |
2 |
tgagatggacatcagcaagcaacctacacaacaagaa-gcaagtatgagtccaggaaaaggaaaagtgcagcggcggagcttgaatagtttaatgaggaa |
100 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
11127114 |
tgagatgaacatcagcaagcaacctacacaacaagaaagcaagtatgagtccaggaaaaggaaaagtgcagcggcggagcttgaatagtttaatgatgaa |
11127213 |
T |
|
| Q |
101 |
gcgaaagatatacaaccacataataaaattatttatactgaatatgtaataaaatgaatgttacaacacagcaagt-ctattacgttttataaaatctag |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11127214 |
gcgaaagatatacaaccacataataaaattatttatactgaatatgtaataaaatgaatgttacaacacagcaagtactattacgttttataaaatctag |
11127313 |
T |
|
| Q |
200 |
aaaagtactattaagttttcagtatcacacagcaagtacagaccatcaagatcttaagcagtttatttagaactttgaaaattgaaaaaagcacagtacc |
299 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||| | || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11127314 |
aaaagtaatattaagttttcagtatcacacagcaagtataaactatcaagctcttaagcagtttatttagaactttgaaaattgaaaaaagcacagtacc |
11127413 |
T |
|
| Q |
300 |
tctgcctaaatgttgtgttgcgaacttcctttctc |
334 |
Q |
| |
|
||||| ||||| ||||||| ||||||||||||||| |
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| T |
11127414 |
tctgcataaatattgtgttccgaacttcctttctc |
11127448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 2 - 200
Target Start/End: Complemental strand, 10893256 - 10893057
Alignment:
| Q |
2 |
tgagatggacatcagcaagcaacctacacaacaagaagcaagtatgagtccaggaaaaggaaaagtgcagcggcggagcttgaatagtttaatgaggaag |
101 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10893256 |
tgagatgaacatcagcaagcaacctacacaacaagaagcaagtatgagtccaggaaaaggaaaagtgcagcggcggagcttgaatagtttaatgaggaag |
10893157 |
T |
|
| Q |
102 |
cgaaagatatacaaccacataataaaattatttatactgaatatgtaataaaatgaatgttacaacacagcaagt-ctattacgttttataaaatctaga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
10893156 |
cgaaagatatacaaccacataataaaattatttatactgaatatgtaataaaatgaatgttacaacacagcaagtactattacgttttataaaatctaga |
10893057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 2 - 334
Target Start/End: Original strand, 11155989 - 11156331
Alignment:
| Q |
2 |
tgagatggacatcagcaagcaacctacacaacaagaagcaagtatgagtccaggaaaaggaaaagtgcagcggcggagcttgaatagtttaatgaggaag |
101 |
Q |
| |
|
||||||| |||||| |||||||||| ||||||||||| |||||||||| |||||||||| |||| |||| || ||| |||||||| ||| | ||||||| |
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|
| T |
11155989 |
tgagatgaacatcaacaagcaacctgcacaacaagaaacaagtatgaggccaggaaaagcgaaagagcagtggtggaacttgaataattttacgaggaag |
11156088 |
T |
|
| Q |
102 |
cgaaagatatacaaccacataataaaattatttata--ctgaatatgtaataaaatgaatgttacaacac--agcaagtcta---ttacgtttt---ata |
191 |
Q |
| |
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||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||| | || |||| | | || | | | |
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|
| T |
11156089 |
tgaaagatatacaaccgcataataaaattatttatataccgaatatgtaataaaatgaatgttacaacacctatgaactctaacttgagattgtccaaca |
11156188 |
T |
|
| Q |
192 |
aaatctagaaaagtactattaagttttcagtatcacacagcaagtacagaccatcaagatcttaagcagtttatttagaactttgaaaattgaaaaaagc |
291 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||| ||||||| | |
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|
| T |
11156189 |
aaatcaagaaaagtactagtaagttttcagtatcacacagcaagtatagaccatcaagatcttcagcaatttatttagaactttgaaaatcgaaaaaaac |
11156288 |
T |
|
| Q |
292 |
acagtacctctgcctaaatgttgtgttgcgaacttcctttctc |
334 |
Q |
| |
|
||||||||| ||||| ||||||||||| |||| |||||||||| |
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| T |
11156289 |
acagtacctatgcctcaatgttgtgttccgaagttcctttctc |
11156331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 2 - 335
Target Start/End: Original strand, 11144811 - 11145158
Alignment:
| Q |
2 |
tgagatggacatcagcaagcaacctacacaacaagaagcaagtat---gagtccaggaaaaggaaaagtgcagcggcggagcttgaatagtttaatgagg |
98 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||| |||| |||||| |||||||| ||| | |||| |
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|
| T |
11144811 |
tgagatgaacatcagcaagcaacctacaccacaagaagcaagtattatgagtccaggaaaagcgaaagagcagtggcggaacttgaataattttacgagg |
11144910 |
T |
|
| Q |
99 |
aagcgaaagatatacaaccacataataaaattatttata--ctgaatatgtaataaaatgaatgttacaacac--agcaagtcta---ttacgtttt--- |
188 |
Q |
| |
|
||| ||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||| | || |||| | | || | |
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|
| T |
11144911 |
aagtgaaagatatacaaccgcataataaaattatttatataccaaatatgtaataaaatgaatgttacaacacctatgaaatctaacttcagattgtcca |
11145010 |
T |
|
| Q |
189 |
ataaaatctagaaaagtactattaagttttcagtatcacacagcaagtacagaccatcaagatcttaagcagtttatttagaactttgaaaat-tgaaaa |
287 |
Q |
| |
|
| |||||| |||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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|
| T |
11145011 |
acaaaatcaagaaaagtactaataagctttcagtatcacacagcaagtgcagaccatcaagatcttaagcaatttatttagaactttgaaaataagaaaa |
11145110 |
T |
|
| Q |
288 |
aagcacagtacctctgcctaaatgttgtgttgcgaacttcctttctca |
335 |
Q |
| |
|
|| |||||||||||||||| ||||||||||| ||||| |||||||||| |
|
|
| T |
11145111 |
aaacacagtacctctgcctcaatgttgtgttccgaacgtcctttctca |
11145158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 256 - 334
Target Start/End: Complemental strand, 10893057 - 10892979
Alignment:
| Q |
256 |
agcagtttatttagaactttgaaaattgaaaaaagcacagtacctctgcctaaatgttgtgttgcgaacttcctttctc |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10893057 |
agcagtttatttagaactttgaaaattgaaaaaagcacagtacctctgcctaaatgttgtgttgagaacttcctttctc |
10892979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 191 - 236
Target Start/End: Complemental strand, 11193178 - 11193133
Alignment:
| Q |
191 |
aaaatctagaaaagtactattaagttttcagtatcacacagcaagt |
236 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
11193178 |
aaaatcaagaaaagtactactaagttttcagtattacacagcaagt |
11193133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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