View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7756_low_5 (Length: 288)
Name: NF7756_low_5
Description: NF7756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7756_low_5 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 4496054 - 4496323
Alignment:
| Q |
18 |
aacattagttcacttggtcttgctagctgcattattttattgaggaacaaagcacaaacttagaatttgatggagattggtcagtatagactataacgtt |
117 |
Q |
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| T |
4496054 |
aacattagttcacttgggcttgctagttgcattattttattgaggaacaaagcacaaacttagaatttgatggagattggtcagtatagactataacgtt |
4496153 |
T |
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| Q |
118 |
ttattgtataggatcaaaactcaacataggatttcagtcatttgattttcatctaatgatttcagtttgctaactgcagtgactggctgattttttcact |
217 |
Q |
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| T |
4496154 |
t-attgtataggatcaaaactcaacataggatttcagtcatttgattttcatctaatgatttcagtttgctaactgcagtgactggctgattttttcact |
4496252 |
T |
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| Q |
218 |
tctcaacataagcactccaatagagctattgattctgtttcttgattcagatttcgataccaggtaactct |
288 |
Q |
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| T |
4496253 |
tctcaacataagcactccaatagagctattgattctgtttcttgattcagatttcgatatcaggtaactct |
4496323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 160 - 288
Target Start/End: Complemental strand, 4400439 - 4400312
Alignment:
| Q |
160 |
tgattttcatctaatgatttcagtttgctaactgcagtgactggctgattttttcacttctcaacataagcactccaatagagctattgattctgtttct |
259 |
Q |
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| T |
4400439 |
tgattttcatctaatggtttcaggttgctaactgcggtgagtggctgattttt-cacttctcaacacaagcattccaatacagctattgattctgtttct |
4400341 |
T |
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| Q |
260 |
tgattcagatttcgataccaggtaactct |
288 |
Q |
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| T |
4400340 |
tgattccgatttcgaaaccaggtaactct |
4400312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 37 - 284
Target Start/End: Original strand, 4527296 - 4527536
Alignment:
| Q |
37 |
ttgctagctgcattattttattgaggaacaaagcacaaacttagaatttgatggagattggtcagtatagactataacgttttattgtatagga-tcaaa |
135 |
Q |
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| T |
4527296 |
ttgctagctgcactattttatcgaggaacaaagcacaaacttagagtttgatggagattggatagtatagattataaccttttattgaataggattcaat |
4527395 |
T |
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| Q |
136 |
actc-aacataggatttcagtcatttgattttcatctaatgatttcagtttgctaactgcagtgactggctgattttttcacttctcaac-ataagcact |
233 |
Q |
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| T |
4527396 |
gcacaaacttagagtttgagtcatctgattttcatctaatggtttcaggttgctaact----------gctgattctttcaattctcaacgcaaagaatt |
4527485 |
T |
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| Q |
234 |
ccaatagagctattgattctgtttcttgattcagatttcgataccaggtaa |
284 |
Q |
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| T |
4527486 |
ccaataaagctattaattctgtttcttgattcagatttcgaaaccaggtaa |
4527536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 4400515 - 4400456
Alignment:
| Q |
18 |
aacattagttcacttggtcttgctagctgcattattttattgaggaacaaagcacaaact |
77 |
Q |
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||||||||||||| || ||||||||||||| |||||||||||||| |||||||||||| |
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| T |
4400515 |
aacattagttcacatgtgtttgctagctgcataattttattgaggaaaaaagcacaaact |
4400456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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