View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7757_high_2 (Length: 384)
Name: NF7757_high_2
Description: NF7757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7757_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 190 - 364
Target Start/End: Original strand, 29580669 - 29580844
Alignment:
| Q |
190 |
ttcctacacttgattttaagctaaaggattcaaatggttgcaacctcctgccttttcttctg-gtatattttcaaaaagaagattaaaatttttaagact |
288 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
29580669 |
ttcctacatttgattttaagctaaaggattcaaatggttacaacctcctgccttttcttctgagtatattttcaaaaagaagattaaattttttaagact |
29580768 |
T |
|
| Q |
289 |
aatcaataacctattcaaagtagaagtttaatagccttttgaaacagtaattcatatgcaatgtccaactccaaac |
364 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
29580769 |
aatcaataacctattcagagtagaagtttaatagccttttgaaacagtaattcatatgcattgtccaactccaaac |
29580844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 5 - 125
Target Start/End: Original strand, 29580484 - 29580604
Alignment:
| Q |
5 |
aactctagacctcatggttacaagtcctaccgtctccgccaaatcatcaattgagtttcccagtaggacctagatgcagaactcggttaacattttacat |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29580484 |
aactctagacctcatggttacaagtcctaccgtctccgccaaatcatcaattgagtttcccagtaggacctagatgcagaactcggttaacattttacat |
29580583 |
T |
|
| Q |
105 |
attttttgagacaatacaagt |
125 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
29580584 |
attttttgagacaatacaagt |
29580604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University