View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7757_high_5 (Length: 238)
Name: NF7757_high_5
Description: NF7757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7757_high_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 23563843 - 23564074
Alignment:
| Q |
14 |
catatagcatatatatacgtgtaagaatagaaggcatatattaaccaggtccatcatttgtagttcgtgcatgtgttgtacttgaggaccataaatacga |
113 |
Q |
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| T |
23563843 |
catatagcatatatatacgtgtaagaatagaaggcatatattaaccaggtccatcatttgtagttcgtgcatgtgttgtacttgaggaccataaatacga |
23563942 |
T |
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| Q |
114 |
atgttattctgcatgaagttgatttaaaaggcatagtattccattttgttaaggataagaaa--------aacactgataataaaataaaggag-aagag |
204 |
Q |
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| T |
23563943 |
atgttattctgcatgaagttgatttaaaaggcatagtattccattttgttaaggataagaaagtaatggtaacattgataataaaataaaggagaaagag |
23564042 |
T |
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| Q |
205 |
aagtggtagcaacactctctcttatactcact |
236 |
Q |
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| T |
23564043 |
aagtggtagcaacactctctcttatactcact |
23564074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 47 - 171
Target Start/End: Original strand, 23570505 - 23570631
Alignment:
| Q |
47 |
gcatatattaaccaggtccatcatttgtagttcgtgcatgtgttgtacttgaggaccataaatacgaatgttattct--gcatgaagttgatttaaaagg |
144 |
Q |
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| T |
23570505 |
gcatatattaaccaggtccatcatttgtagttcgtgcatgtgctgtacttgaggaccatatatgtgaatgctattctgcgcatgaagttgatttaaaagg |
23570604 |
T |
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| Q |
145 |
catagtattccattttgttaaggataa |
171 |
Q |
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| T |
23570605 |
catagtattcctttttgttaaggataa |
23570631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 66 - 172
Target Start/End: Original strand, 23597088 - 23597194
Alignment:
| Q |
66 |
atcatttgtagttcgtgcatgtgttgtacttgaggaccataaatacgaatgttattctgcatgaagttgatttaaaaggcatagtattccattttgttaa |
165 |
Q |
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| T |
23597088 |
atcatttgttgttcgtgcatgtgctgtacttgaggaccgtatatacgaatgctattctgcatgaagtagatttaaaaggcatagtattcctttttgttaa |
23597187 |
T |
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| Q |
166 |
ggataag |
172 |
Q |
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| T |
23597188 |
ggataag |
23597194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 66 - 172
Target Start/End: Original strand, 23587067 - 23587175
Alignment:
| Q |
66 |
atcatttgtagttcgtgcatgtgttgtacttgaggaccataaata--cgaatgttattctgcatgaagttgatttaaaaggcatagtattccattttgtt |
163 |
Q |
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| T |
23587067 |
atcatttgttattcgtgcatgttctgaacttgaggaccatatatatacaaatgctattctttatgaagttgatttaaaaggcatagtattccattttgtt |
23587166 |
T |
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| Q |
164 |
aaggataag |
172 |
Q |
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| T |
23587167 |
aaggataag |
23587175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 41727601 - 41727565
Alignment:
| Q |
202 |
gagaagtggtagcaacactctctcttatactcactct |
238 |
Q |
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| T |
41727601 |
gagaagtgctagcaacactctctctaatactcactct |
41727565 |
T |
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