View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7757_low_1 (Length: 531)
Name: NF7757_low_1
Description: NF7757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7757_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 1 - 514
Target Start/End: Original strand, 47422259 - 47422772
Alignment:
| Q |
1 |
agaggaagaggcgccgtgatagatttgaaatgttgaagagtttttgtgagacagtggttaacaaaataatagcacaacaagaagaaatacacaataagct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
47422259 |
agaggaagaggcgccgtgatagatttgaaatgttgaagagtttttgtgagacagtggttaataaaataatagcacaacaagaagaaatacacaataagct |
47422358 |
T |
|
| Q |
101 |
acttgaagacatgctcaaaagagatcaagaaaagcttgatagagaggaaacatggaaaaaacaagagattgaaaggatgaacatgatggtacaagaacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47422359 |
acttgaagacatgctcaaaagagatcaagaaaagcttgatagagaggaaacatggaaaaaacaagagattgaaaggatgaacatgatggtacaagaacaa |
47422458 |
T |
|
| Q |
201 |
caagctattgcaagtgatagacaagccaacatcattgaattcttgaacaaatatctagccacgggatattcttcttcttcttctacacaattgcacccac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
47422459 |
caagctattgcaagtgatagacaagccaacatcattgaattcttgaacaaatatctagccacaggatattcttcttcttcttctacacaattgcacccac |
47422558 |
T |
|
| Q |
301 |
aaaaccctagtaatccttctaacaatctagaatcaaaaacacctttttctaatgtgatagcagatcaaaaccctagctcaagtgacacagagtactcaaa |
400 |
Q |
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| T |
47422559 |
aaaaccctaataatccttctaacaatctagaatcaaaaacacctttttctaatgtgatagcagatcaaaaccctagctcaagtgacacagagtactcaaa |
47422658 |
T |
|
| Q |
401 |
ttccacttctacccttgttgtgcctacaataatggagaaattagaggataggagaaggtggccaagagatgaagtgttggcactcataaacctcaagtct |
500 |
Q |
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| T |
47422659 |
ttccacttctacccttgttgtgcctacaataatggagaaattagaggataggagaaggtggccaagagatgaagtgttggcactcataaacctcaagtct |
47422758 |
T |
|
| Q |
501 |
actacaagtgtaat |
514 |
Q |
| |
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|||||||||||||| |
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| T |
47422759 |
actacaagtgtaat |
47422772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 36128126 - 36127974
Alignment:
| Q |
17 |
tgatagatttgaaatgttgaagagtttttgtgagacagtggttaacaaaataatagcacaacaagaagaaatacacaataagctacttgaagacatgctc |
116 |
Q |
| |
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||||||||||||| |||| ||| |||||||||||| || || || ||||| || | |||||||||||||| ||||| ||||| ||||||| ||| | |
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| T |
36128126 |
tgatagatttgaagtgtttaagggtttttgtgagagtgttgtaaagaaaatgatggatcaacaagaagaaatgcacaacaagcttattgaagatatggtt |
36128027 |
T |
|
| Q |
117 |
aaaagagatcaagaaaagcttgatagagaggaaacatggaaaaaacaagagat |
169 |
Q |
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||||||||| |||| ||| || |||||| ||| | ||||| ||||||||||| |
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| T |
36128026 |
aaaagagatgaagagaagtttagtagagaagaagcttggaagaaacaagagat |
36127974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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