View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7757_low_4 (Length: 364)
Name: NF7757_low_4
Description: NF7757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7757_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 8 - 349
Target Start/End: Original strand, 33596165 - 33596506
Alignment:
| Q |
8 |
tggtgttgatggtacaaagcacatgtcaaagggaaatgcaacattggtattggttttactatgtttctacgccgcaggttttggttggtcttggggtcca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33596165 |
tggtgttgatggtacaaagcacatgtcaaagggaaatgcaacattggtattggttttactatgtttctacgccgcaggttttggttggtcttggggtcca |
33596264 |
T |
|
| Q |
108 |
ctcacctggctaattcgaagtgaaattttccccttaaaaatcagaacaactggacaaagtatagcagttggtgtacaattcataatcttgtttgtgttat |
207 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33596265 |
ctcacctggctaattccaagtgaaattttccccttaaaaatcagaacaactggacaaagtatagcagttggtgtacaattcataatcttgtttgtgttat |
33596364 |
T |
|
| Q |
208 |
cacaaacattcttgacaatgctatgccacttcaagtttggtgctttcttgttctatgcattttgggttgcagtgatgactctatttatcattttcttttt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33596365 |
cacaaacattcttgacaatgctatgccacttcaagtttggtgctttcttgttctatgcattttgggttgcagtgatgactctatttatcattttcttttt |
33596464 |
T |
|
| Q |
308 |
gcctgagaccaaaggaattgctttggagtcaatgtatattat |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33596465 |
gcctgagaccaaaggaattgctttggagtcaatgtatattat |
33596506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 8 - 349
Target Start/End: Original strand, 33603296 - 33603637
Alignment:
| Q |
8 |
tggtgttgatggtacaaagcacatgtcaaagggaaatgcaacattggtattggttttactatgtttctacgccgcaggttttggttggtcttggggtcca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33603296 |
tggtgttgatggtacaaagcacatgtcaaagggaaatgcaacattggtattggttttactatgtttctacgccgcaggttttggttggtcttggggtcca |
33603395 |
T |
|
| Q |
108 |
ctcacctggctaattcgaagtgaaattttccccttaaaaatcagaacaactggacaaagtatagcagttggtgtacaattcataatcttgtttgtgttat |
207 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33603396 |
ctcacctggctaattccaagtgaaattttccccttaaaaatcagaacaactggacaaagtatagcagttggtgtacaattcataatcttgtttgtgttat |
33603495 |
T |
|
| Q |
208 |
cacaaacattcttgacaatgctatgccacttcaagtttggtgctttcttgttctatgcattttgggttgcagtgatgactctatttatcattttcttttt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33603496 |
cacaaacattcttgacaatgctatgccacttcaagtttggtgctttcttgttctatgcattttgggttgcagtgatgactctatttatcattttcttttt |
33603595 |
T |
|
| Q |
308 |
gcctgagaccaaaggaattgctttggagtcaatgtatattat |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33603596 |
gcctgagaccaaaggaattgctttggagtcaatgtatattat |
33603637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 8 - 349
Target Start/End: Original strand, 33588993 - 33589334
Alignment:
| Q |
8 |
tggtgttgatggtacaaagcacatgtcaaagggaaatgcaacattggtattggttttactatgtttctacgccgcaggttttggttggtcttggggtcca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33588993 |
tggtgttgatggtacaaagcacatgtcaaagggaaatgcaacattggtattggttttactatgtttctacgccgcaggttttggttggtcttggggtcca |
33589092 |
T |
|
| Q |
108 |
ctcacctggctaattcgaagtgaaattttccccttaaaaatcagaacaactggacaaagtatagcagttggtgtacaattcataatcttgtttgtgttat |
207 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
33589093 |
ctcacctggctaattccaagtgaaattttccccttaaaaatcagaacaactggacaaagtatagcagttggtgtacaattcataatcttgtttatgttat |
33589192 |
T |
|
| Q |
208 |
cacaaacattcttgacaatgctatgccacttcaagtttggtgctttcttgttctatgcattttgggttgcagtgatgactctatttatcattttcttttt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33589193 |
cacaaacattcttgacaatgctatgccacttcaagtttggtgctttcttgttctatgcattttgggttgcagtgatgactctatttatcattttcttttt |
33589292 |
T |
|
| Q |
308 |
gcctgagaccaaaggaattgctttggagtcaatgtatattat |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33589293 |
gcctgagaccaaaggaattgctttggagtcaatgtatattat |
33589334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 8 - 343
Target Start/End: Original strand, 33618874 - 33619209
Alignment:
| Q |
8 |
tggtgttgatggtacaaagcacatgtcaaagggaaatgcaacattggtattggttttactatgtttctacgccgcaggttttggttggtcttggggtcca |
107 |
Q |
| |
|
||||||||||||||||||| |||| || ||||| ||||||| | |||||||||| || | ||||||||| | ||||||||||||||||| ||||||||| |
|
|
| T |
33618874 |
tggtgttgatggtacaaaggacatatccaagggcaatgcaatagtggtattggtgctattgtgtttctactctgcaggttttggttggtcatggggtcca |
33618973 |
T |
|
| Q |
108 |
ctcacctggctaattcgaagtgaaattttccccttaaaaatcagaacaactggacaaagtatagcagttggtgtacaattcataatcttgtttgtgttat |
207 |
Q |
| |
|
| || ||||| |||| |||||| |||||||| ||||||| ||||| || |||||||| ||||| |||| ||| ||||||||||| | |||||||||| |
|
|
| T |
33618974 |
ttaacatggcttattccaagtgagattttcccagtaaaaataagaaccacaggacaaagcatagctgttgctgtgcaattcataataatctttgtgttat |
33619073 |
T |
|
| Q |
208 |
cacaaacattcttgacaatgctatgccacttcaagtttggtgctttcttgttctatgcattttgggttgcagtgatgactctatttatcattttcttttt |
307 |
Q |
| |
|
| |||||||||||||||||| |||||||| | |||||||| || ||| | |||||||| ||||||||| ||||||||||| ||| | || ||||| || |
|
|
| T |
33619074 |
cgcaaacattcttgacaatgttatgccacatgaagtttggggccttcgtcttctatgctttttgggttattgtgatgactctgtttgttatcttcttctt |
33619173 |
T |
|
| Q |
308 |
gcctgagaccaaaggaattgctttggagtcaatgta |
343 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
|
|
| T |
33619174 |
gcctgagaccaaaggaattcctttggagtcaatgta |
33619209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 8 - 343
Target Start/End: Original strand, 33609592 - 33609927
Alignment:
| Q |
8 |
tggtgttgatggtacaaagcacatgtcaaagggaaatgcaacattggtattggttttactatgtttctacgccgcaggttttggttggtcttggggtcca |
107 |
Q |
| |
|
||||||||| |||||||| |||| || ||||| ||||||| ||| |||||||| || ||||||| ||| | || |||||||||||||| |||||||| |
|
|
| T |
33609592 |
tggtgttgacggtacaaacgacatatccaaggggaatgcaatattagtattggtgctattatgtttatactctgctggttttggttggtcatggggtcct |
33609691 |
T |
|
| Q |
108 |
ctcacctggctaattcgaagtgaaattttccccttaaaaatcagaacaactggacaaagtatagcagttggtgtacaattcataatcttgtttgtgttat |
207 |
Q |
| |
|
|| || ||||| |||| |||||| |||||||| |||| || ||||| || |||||||| ||||| ||| | ||||||||||||| | |||||| ||| |
|
|
| T |
33609692 |
ctaacatggcttattccaagtgagattttcccagtaaatataagaaccacaggacaaagcatagctattgctatacaattcataatagtatttgtgctat |
33609791 |
T |
|
| Q |
208 |
cacaaacattcttgacaatgctatgccacttcaagtttggtgctttcttgttctatgcattttgggttgcagtgatgactctatttatcattttcttttt |
307 |
Q |
| |
|
|||||||||||||||||||| |||| ||||| |||||||| || |||||||||||||| ||||||||| ||||||||||| ||||| || || || || |
|
|
| T |
33609792 |
cacaaacattcttgacaatgttatgtcactttaagtttggagccttcttgttctatgctggttgggttgctgtgatgactctttttattatatttttctt |
33609891 |
T |
|
| Q |
308 |
gcctgagaccaaaggaattgctttggagtcaatgta |
343 |
Q |
| |
|
||||||||| ||||||||| ||||||| |||||||| |
|
|
| T |
33609892 |
gcctgagactaaaggaattcctttggattcaatgta |
33609927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 8 - 341
Target Start/End: Original strand, 33628077 - 33628410
Alignment:
| Q |
8 |
tggtgttgatggtacaaagcacatgtcaaagggaaatgcaacattggtattggttttactatgtttctacgccgcaggttttggttggtcttggggtcca |
107 |
Q |
| |
|
|||||||||||||||||| |||| |||||||| ||||||| |||||||||||| || | |||||||| || || |||||||||| ||| ||| |||| |
|
|
| T |
33628077 |
tggtgttgatggtacaaatgacatatcaaagggcaatgcaatattggtattggtactaatgtgtttctatgctgcgggttttggtttgtcgtggagtcct |
33628176 |
T |
|
| Q |
108 |
ctcacctggctaattcgaagtgaaattttccccttaaaaatcagaacaactggacaaagtatagcagttggtgtacaattcataatcttgtttgtgttat |
207 |
Q |
| |
|
|| || |||||||||| || ||| ||||| || |||| || |||| ||||||||||| ||||| |||| ||| || |||||||| | |||||||||| |
|
|
| T |
33628177 |
ctaacatggctaattccaactgagatttttccagtaaatataagaagcactggacaaagcatagctgttgctgtgcatttcataatgatatttgtgttat |
33628276 |
T |
|
| Q |
208 |
cacaaacattcttgacaatgctatgccacttcaagtttggtgctttcttgttctatgcattttgggttgcagtgatgactctatttatcattttcttttt |
307 |
Q |
| |
|
| |||||||||||||| ||| |||||||||| |||||||| || || ||||||||||| |||||||| ||||||||||| || || || || ||||| |
|
|
| T |
33628277 |
cgcaaacattcttgactatgttatgccacttgaagtttggggcatttttgttctatgctggttgggttgttgtgatgactcttttcattatatttttttt |
33628376 |
T |
|
| Q |
308 |
gcctgagaccaaaggaattgctttggagtcaatg |
341 |
Q |
| |
|
||| ||||| ||||||||||||||||| |||||| |
|
|
| T |
33628377 |
gccggagactaaaggaattgctttggattcaatg |
33628410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 36 - 260
Target Start/End: Original strand, 33563440 - 33563664
Alignment:
| Q |
36 |
aagggaaatgcaacattggtattggttttactatgtttctacgccgcaggttttggttggtcttggggtccactcacctggctaattcgaagtgaaattt |
135 |
Q |
| |
|
|||||||||| |||||| |||| || || | ||||||||| | ||||||||||||||||| |||||||| || ||| |||||| ||||||||||| |
|
|
| T |
33563440 |
aagggaaatggtacattgttattagtgttgatgtgtttctactctgcaggttttggttggtcatggggtcctctattatggataattccaagtgaaattt |
33563539 |
T |
|
| Q |
136 |
tccccttaaaaatcagaacaactggacaaagtatagcagttggtgtacaattcataatcttgtttgtgttatcacaaacattcttgacaatgctatgcca |
235 |
Q |
| |
|
| || || ||||||||||||||||||||||| ||||| || ||| |||||||||| | |||||||| || || ||||||||||||||| |||| || |
|
|
| T |
33563540 |
ttcctttgaaaatcagaacaactggacaaagcatagctatttctgtgcaattcataactatatttgtgttgtctcagacattcttgacaatgttatgtca |
33563639 |
T |
|
| Q |
236 |
cttcaagtttggtgctttcttgttc |
260 |
Q |
| |
|
||| |||| |||||||||||||||| |
|
|
| T |
33563640 |
cttgaagtatggtgctttcttgttc |
33563664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 235
Target Start/End: Original strand, 33623690 - 33623917
Alignment:
| Q |
8 |
tggtgttgatggtacaaagcacatgtcaaagggaaatgcaacattggtattggttttactatgtttctacgccgcaggttttggttggtcttggggtcca |
107 |
Q |
| |
|
|||||||||||||||||| |||| |||||||| ||||||| |||| ||||||| || ||||||||| || || ||||| | || ||| ||| | || |
|
|
| T |
33623690 |
tggtgttgatggtacaaatgacatatcaaagggcaatgcaatattgatattggtactaatatgtttctgtgctgcgggtttagatttgtcgtggagccct |
33623789 |
T |
|
| Q |
108 |
ctcacctggctaattcgaagtgaaattttccccttaaaaatcagaacaactggacaaagtatagcagttggtgtacaattcataatcttgtttgtgttat |
207 |
Q |
| |
|
|| || |||||||||| || ||| ||||||||| | | || ||| | | ||||||| ||||| |||| ||| || |||||||| | |||||| ||| |
|
|
| T |
33623790 |
ctaacatggctaattccaactgagattttccccatttatataggaagcattcgacaaagcatagctgttgttgtgcatttcataatggtctttgtgctat |
33623889 |
T |
|
| Q |
208 |
cacaaacattcttgacaatgctatgcca |
235 |
Q |
| |
|
| |||||||||||||| ||| ||||||| |
|
|
| T |
33623890 |
cgcaaacattcttgactatgttatgcca |
33623917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University