View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7757_low_5 (Length: 295)
Name: NF7757_low_5
Description: NF7757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7757_low_5 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 33006295 - 33006000
Alignment:
| Q |
1 |
ttaaatgagcaacttcataaaccataaaccaaatcactgatctatagttagcaattctctctccaattccattc-atggccgaaacaaaaccaactagtc |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
33006295 |
ttaaatgagcaacttcataaaccataaaccaaatcactgatctatagttagcaactctctctccaattccattccatggccgaaacaaaaccaactagtc |
33006196 |
T |
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| Q |
100 |
atatagtagtaacatcaatccctctgtttagccatgaatcttctgtaattgagttctgcaagagactcattcaagtccataaccacttccaaatcacttg |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33006195 |
atatagtagtaacatcaatccctctgtttagccatgaatcttctgtaattgagttctgcaagagactcattcaagtccataaccacttccaaatcacttg |
33006096 |
T |
|
| Q |
200 |
catcttccccaccattgatgcacctatcccagccaccctcaaattacttgaatctcttccttcaaccatacactgcactttcctccctccaataaa |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33006095 |
catcttccccaccattgatgcacctatcccagccaccctcaaattacttgaatctcttccttcaaccatacactgcactttcctccctccaataaa |
33006000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 98 - 295
Target Start/End: Complemental strand, 3778970 - 3778773
Alignment:
| Q |
98 |
tcatatagtagtaacatcaatccctctgtttagccatgaatcttctgtaattgagttctgcaagagactcattcaagtccataaccacttccaaatcact |
197 |
Q |
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||||||||||||||| ||||| ||| |||||||||| || |||| | |||||||| ||||||||||| ||||| ||||| ||||| | || ||||| |
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| T |
3778970 |
tcatatagtagtaacttcaattcctgtgtttagccaccaaagttctattattgagttttgcaagagactaattcatctccatcaccacattcatgtcact |
3778871 |
T |
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| Q |
198 |
tgcatcttccccaccattgatgcacctatcccagccaccctcaaattacttgaatctcttccttcaaccatacactgcactttcctccctccaataaa |
295 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
3778870 |
tgcatcttccccaccattgatgcacctatccctgccaccctcaaattacttgagtctcttccttcatccataaactgcactttcctccctccaataaa |
3778773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 114 - 295
Target Start/End: Original strand, 3706902 - 3707083
Alignment:
| Q |
114 |
tcaatccctctgtttagccatgaatcttctgtaattgagttctgcaagagactcattcaagtccataaccacttccaaatcacttgcatcttccccacca |
213 |
Q |
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||||||||||| ||||||||| || |||| | |||||||| ||||||||||| ||||| ||||| ||||| | || ||||||||||||||||||||| |
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| T |
3706902 |
tcaatccctctatttagccatcaaagttctattattgagttttgcaagagactaattcatctccatcaccacattcatgtcacttgcatcttccccacca |
3707001 |
T |
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| Q |
214 |
ttgatgcacctatcccagccaccctcaaattacttgaatctcttccttcaaccatacactgcactttcctccctccaataaa |
295 |
Q |
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|||||||||||||||| |||||||||||||||||||| |||||||||||| ||||| ||||| |||||||||||||||||| |
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| T |
3707002 |
ttgatgcacctatccctgccaccctcaaattacttgagtctcttccttcatccataagctgcagtttcctccctccaataaa |
3707083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 98 - 290
Target Start/End: Original strand, 3700205 - 3700397
Alignment:
| Q |
98 |
tcatatagtagtaacatcaatccctctgtttagccatgaatcttctgtaattgagttctgcaagagactcattcaagtccataaccacttccaaatcact |
197 |
Q |
| |
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|||||||| ||||| ||| ||||||| || ||||| |||| || |||||||||| ||||||||||||||||| ||||||| || | || |||||| |
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| T |
3700205 |
tcatatagcagtaatttcagtccctctattcagccaccaatcctccataattgagttatgcaagagactcattcatctccataaatacattcatatcact |
3700304 |
T |
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| Q |
198 |
tgcatcttccccaccattgatgcacctatcccagccaccctcaaattacttgaatctcttccttcaaccatacactgcactttcctccctcca |
290 |
Q |
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|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||| |
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| T |
3700305 |
tgcatcttccccactattgatgcacctatccctgccaccctcaaattacttgaatctcttccttcatcaataaactgcactttcctccctcca |
3700397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 114 - 292
Target Start/End: Complemental strand, 3771293 - 3771115
Alignment:
| Q |
114 |
tcaatccctctgtttagccatgaatcttctgtaattgagttctgcaagagactcattcaagtccataaccacttccaaatcacttgcatcttccccacca |
213 |
Q |
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||||| ||||| |||||||| || |||| | |||||||||||||||||||| ||||| ||||| ||||| | || ||||||||||||||| |||| | |
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| T |
3771293 |
tcaattcctctatttagccaccaaagttctattattgagttctgcaagagactaattcatctccatcaccacattcatatcacttgcatcttctccacta |
3771194 |
T |
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| Q |
214 |
ttgatgcacctatcccagccaccctcaaattacttgaatctcttccttcaaccatacactgcactttcctccctccaat |
292 |
Q |
| |
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|||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
3771193 |
ttgatgcaccaatccctgccaccctcaaattacttgaatctcttccttcatccataaactgcactttcctccctccaat |
3771115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 114 - 295
Target Start/End: Original strand, 3718411 - 3718592
Alignment:
| Q |
114 |
tcaatccctctgtttagccatgaatcttctgtaattgagttctgcaagagactcattcaagtccataaccacttccaaatcacttgcatcttccccacca |
213 |
Q |
| |
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||||| ||||| |||||||| || |||| | |||||||| ||||||||| | ||||| ||||| ||||| | || ||||||||||||||||||||| |
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| T |
3718411 |
tcaattcctctatttagccaccaaagttctattattgagttttgcaagagattaattcatctccatcaccacattcatgtcacttgcatcttccccacca |
3718510 |
T |
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| Q |
214 |
ttgatgcacctatcccagccaccctcaaattacttgaatctcttccttcaaccatacactgcactttcctccctccaataaa |
295 |
Q |
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|||||||||| ||||| |||||||||||||||||||| |||||||| ||| ||||| | ||||||||||||||||||||||| |
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| T |
3718511 |
ttgatgcaccaatccctgccaccctcaaattacttgagtctcttccgtcatccataaaatgcactttcctccctccaataaa |
3718592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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