View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7758_low_10 (Length: 303)
Name: NF7758_low_10
Description: NF7758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7758_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 300
Target Start/End: Complemental strand, 53638953 - 53638676
Alignment:
| Q |
15 |
aactctctgaattgaagaaataatttgagagaaaaatagtacatgaggatagatacaatacaaccttttctcgatagaacaacaatctgttttgttga-- |
112 |
Q |
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| T |
53638953 |
aactctctgaattgaagaaataatttgagagaaaaatagtacatgaggatagatacaatacaaccttttctcgattgaacaacagtctgttttgttgatg |
53638854 |
T |
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| Q |
113 |
-----atgtgacttgttgctaatggttcataatggttttaatgacttgttacgttgcttgaggaatctgacttgggtgggaagctctactgtatttcttt |
207 |
Q |
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| T |
53638853 |
ctgctatgtgacttgttgctaatggtt----------ttaatgacttgtt-----gcttgaggaatctgacttggatgggaagctctactgtatttcttt |
53638769 |
T |
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| Q |
208 |
ggccataggtgtttttgttggttctctgtcgtcgttccttttcatgctttaacagtgtccttgtaactttttccctctttccgatttcttctt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53638768 |
ggccataggtgtttttgttggttctctgtcgtcgttccttttcatgctttaacagtgtccttgtaactttttccctctttccgatttcttctt |
53638676 |
T |
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