View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7758_low_13 (Length: 230)

Name: NF7758_low_13
Description: NF7758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7758_low_13
NF7758_low_13
[»] chr2 (22 HSPs)
chr2 (1-215)||(13149069-13149283)
chr2 (17-208)||(2610291-2610482)
chr2 (62-215)||(6238127-6238279)
chr2 (17-205)||(41763369-41763557)
chr2 (17-208)||(3865835-3866026)
chr2 (17-208)||(8180543-8180734)
chr2 (17-208)||(451950-452141)
chr2 (17-215)||(41197556-41197754)
chr2 (18-208)||(11992435-11992625)
chr2 (17-208)||(45367952-45368143)
chr2 (17-208)||(4807355-4807546)
chr2 (35-205)||(30743389-30743559)
chr2 (17-112)||(38429743-38429838)
chr2 (4-169)||(12734508-12734668)
chr2 (128-208)||(38453059-38453139)
chr2 (61-112)||(32443473-32443524)
chr2 (17-111)||(36183311-36183405)
chr2 (11-115)||(24583928-24584032)
chr2 (17-208)||(3243979-3244170)
chr2 (28-115)||(37281963-37282050)
chr2 (17-186)||(23997402-23997571)
chr2 (169-215)||(17581224-17581270)
[»] chr1 (32 HSPs)
chr1 (17-215)||(34827430-34827628)
chr1 (17-215)||(9592490-9592688)
chr1 (17-208)||(30202458-30202649)
chr1 (17-208)||(32083073-32083264)
chr1 (4-208)||(19936285-19936489)
chr1 (17-208)||(49347721-49347912)
chr1 (4-213)||(9599709-9599918)
chr1 (17-208)||(43240709-43240900)
chr1 (17-208)||(51441093-51441283)
chr1 (17-208)||(1210508-1210699)
chr1 (17-208)||(8391533-8391726)
chr1 (61-208)||(37463239-37463384)
chr1 (17-171)||(696069-696223)
chr1 (17-208)||(8671683-8671874)
chr1 (17-208)||(22089857-22090048)
chr1 (20-215)||(46226613-46226808)
chr1 (41-215)||(11331416-11331590)
chr1 (41-215)||(11489437-11489611)
chr1 (17-112)||(15085793-15085888)
chr1 (18-172)||(39140313-39140466)
chr1 (17-114)||(4379862-4379959)
chr1 (69-208)||(7814226-7814366)
chr1 (17-139)||(18469408-18469530)
chr1 (141-215)||(27445654-27445728)
chr1 (138-215)||(51234370-51234447)
chr1 (17-208)||(51601821-51602012)
chr1 (41-115)||(40419495-40419569)
chr1 (17-109)||(34792677-34792768)
chr1 (10-82)||(51234503-51234575)
chr1 (142-205)||(12807539-12807602)
chr1 (17-112)||(26016296-26016391)
chr1 (179-215)||(32066761-32066797)
[»] chr8 (26 HSPs)
chr8 (17-212)||(39946616-39946811)
chr8 (42-209)||(18124938-18125104)
chr8 (17-208)||(36565569-36565760)
chr8 (17-215)||(36544908-36545101)
chr8 (18-208)||(37077528-37077718)
chr8 (69-208)||(42854384-42854523)
chr8 (17-172)||(2796354-2796509)
chr8 (17-215)||(29735566-29735760)
chr8 (124-215)||(4032929-4033020)
chr8 (99-215)||(13984790-13984906)
chr8 (17-214)||(12492170-12492367)
chr8 (17-205)||(25288668-25288856)
chr8 (17-205)||(25300003-25300191)
chr8 (141-211)||(25439296-25439366)
chr8 (17-112)||(15215599-15215694)
chr8 (33-209)||(30113541-30113716)
chr8 (20-115)||(37256048-37256141)
chr8 (103-214)||(8879848-8879959)
chr8 (72-113)||(13172032-13172073)
chr8 (138-206)||(25985305-25985373)
chr8 (126-205)||(44681513-44681592)
chr8 (35-113)||(9905232-9905310)
chr8 (158-208)||(10824557-10824607)
chr8 (160-212)||(13589199-13589251)
chr8 (17-105)||(36143235-36143323)
chr8 (17-109)||(39953592-39953684)
[»] chr7 (29 HSPs)
chr7 (17-215)||(31004979-31005177)
chr7 (17-215)||(33072710-33072908)
chr7 (17-208)||(35906529-35906720)
chr7 (17-208)||(36651757-36651948)
chr7 (17-208)||(36869617-36869808)
chr7 (30-208)||(7189574-7189751)
chr7 (17-208)||(11593723-11593914)
chr7 (17-208)||(34869183-34869374)
chr7 (17-208)||(38606768-38606959)
chr7 (17-209)||(23404180-23404372)
chr7 (17-208)||(33350134-33350325)
chr7 (18-188)||(12841604-12841774)
chr7 (42-208)||(39906728-39906894)
chr7 (17-206)||(32630360-32630549)
chr7 (4-208)||(7272803-7273006)
chr7 (17-208)||(43281439-43281630)
chr7 (61-215)||(46356223-46356377)
chr7 (134-208)||(37616679-37616753)
chr7 (126-206)||(48919153-48919233)
chr7 (18-114)||(25579400-25579496)
chr7 (17-208)||(49029044-49029230)
chr7 (126-208)||(24425958-24426040)
chr7 (4-97)||(47848548-47848641)
chr7 (150-210)||(12965788-12965847)
chr7 (4-87)||(36514520-36514603)
chr7 (17-104)||(37617811-37617898)
chr7 (150-215)||(12965699-12965763)
chr7 (69-113)||(15681215-15681259)
chr7 (69-113)||(21517706-21517750)
[»] chr6 (16 HSPs)
chr6 (19-208)||(20427966-20428155)
chr6 (17-215)||(6056098-6056296)
chr6 (17-208)||(5631581-5631772)
chr6 (17-208)||(10100185-10100376)
chr6 (17-208)||(9706539-9706730)
chr6 (4-146)||(30031081-30031223)
chr6 (20-208)||(14030569-14030757)
chr6 (17-208)||(607922-608113)
chr6 (17-208)||(5258478-5258669)
chr6 (17-212)||(33495956-33496138)
chr6 (41-206)||(2065108-2065274)
chr6 (61-215)||(30679230-30679384)
chr6 (11-212)||(2689415-2689616)
chr6 (17-114)||(28027153-28027250)
chr6 (32-113)||(11295243-11295324)
chr6 (91-208)||(27790919-27791036)
[»] chr3 (18 HSPs)
chr3 (17-208)||(51448037-51448228)
chr3 (17-208)||(38849857-38850048)
chr3 (17-204)||(27917339-27917526)
chr3 (35-200)||(5168599-5168764)
chr3 (17-208)||(47542040-47542230)
chr3 (17-215)||(30345283-30345477)
chr3 (17-208)||(25191142-25191333)
chr3 (17-208)||(28245200-28245391)
chr3 (17-208)||(52138563-52138754)
chr3 (61-215)||(3186525-3186679)
chr3 (17-114)||(43695093-43695190)
chr3 (17-181)||(26490106-26490271)
chr3 (18-204)||(53519353-53519539)
chr3 (130-208)||(50621801-50621879)
chr3 (17-111)||(33272356-33272450)
chr3 (138-208)||(40674562-40674632)
chr3 (138-208)||(55244065-55244135)
chr3 (138-207)||(54425355-54425424)
[»] scaffold0570 (1 HSPs)
scaffold0570 (17-208)||(2598-2789)
[»] chr4 (29 HSPs)
chr4 (17-208)||(27450501-27450692)
chr4 (18-206)||(1211719-1211907)
chr4 (17-208)||(435992-436183)
chr4 (17-208)||(31960142-31960333)
chr4 (4-114)||(45205163-45205273)
chr4 (17-208)||(1777343-1777534)
chr4 (21-208)||(23906633-23906820)
chr4 (17-208)||(33226972-33227163)
chr4 (17-208)||(48174421-48174612)
chr4 (17-208)||(56375053-56375244)
chr4 (17-215)||(35690061-35690258)
chr4 (28-212)||(39708216-39708401)
chr4 (21-205)||(43433684-43433868)
chr4 (4-114)||(7092534-7092644)
chr4 (35-208)||(46583170-46583343)
chr4 (1-112)||(1793319-1793430)
chr4 (17-208)||(16002691-16002881)
chr4 (17-208)||(50286734-50286925)
chr4 (17-208)||(53707557-53707748)
chr4 (17-208)||(55578797-55578985)
chr4 (128-208)||(48622966-48623046)
chr4 (138-208)||(54914638-54914707)
chr4 (17-114)||(31458885-31458982)
chr4 (28-185)||(41009689-41009846)
chr4 (17-205)||(47265530-47265721)
chr4 (28-208)||(10775761-10775941)
chr4 (161-215)||(3273178-3273232)
chr4 (169-215)||(17666518-17666564)
chr4 (71-116)||(8917710-8917755)
[»] chr5 (19 HSPs)
chr5 (18-215)||(27650-27847)
chr5 (18-208)||(28977186-28977376)
chr5 (17-215)||(34272778-34272976)
chr5 (1-215)||(36200538-36200752)
chr5 (17-208)||(1275028-1275219)
chr5 (17-208)||(10639060-10639251)
chr5 (17-215)||(1287917-1288115)
chr5 (17-208)||(12492715-12492906)
chr5 (17-215)||(2075802-2076000)
chr5 (17-171)||(16347706-16347860)
chr5 (67-208)||(3301612-3301753)
chr5 (17-208)||(20318754-20318941)
chr5 (141-215)||(24178280-24178354)
chr5 (169-214)||(20077297-20077342)
chr5 (145-208)||(16779445-16779508)
chr5 (17-184)||(32516345-32516512)
chr5 (143-208)||(3394473-3394538)
chr5 (61-208)||(17340844-17340991)
chr5 (145-207)||(16771987-16772049)
[»] scaffold0018 (1 HSPs)
scaffold0018 (17-208)||(31231-31422)
[»] scaffold0024 (1 HSPs)
scaffold0024 (35-208)||(82484-82657)
[»] scaffold1493 (1 HSPs)
scaffold1493 (141-205)||(37-101)
[»] scaffold0113 (1 HSPs)
scaffold0113 (141-206)||(12050-12115)
[»] scaffold0157 (1 HSPs)
scaffold0157 (17-103)||(25773-25859)


Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 13149283 - 13149069
Alignment:
Q  1 tcttatcccttttagccttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgt 100  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  13149283 tcttatcccttttagtcttaccacttgtccaacacaacaccctcatctctgttacacttgcttgattttcgtgttggttcttaaccacctgacactctgt 13149184  T
Q  101 accatacaacatcgttagcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccat 200  Q
    ||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  13149183 accgtacaacatcgttagcctggttgttgtccaatataattttccttttaacttgagtggtactttcttatcatatgaaacacctgaagctcttcttcat 13149084  T
Q  201 ttcaaccatccaact 215  Q
    |||||||||||||||    
T  13149083 ttcaaccatccaact 13149069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 2610482 - 2610291
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||||| || || ||||||||| | ||| ||| ||||||| || |||||  |||||||| || ||||||| ||||||||||||| ||      
T  2610482 cttaccactcatccaacgcagcatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaacaacgcc 2610383  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
    || ||| ||||||||| ||| || |||||||| ||||| |||||||||||||||||  ||||||||||||| ||||||||||||||||||||    
T  2610382 agtctgactgttgtccgatagaactttcctttcaacttaagtggtactttcttatcgcataaaacacctgaggctcttctccatttcaacca 2610291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 62 - 215
Target Start/End: Original strand, 6238127 - 6238279
Alignment:
Q  62 ttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgttagcctgtctgttgtccaatataattttccttttaacttgagtggt 161  Q
    |||||| ||||||||  ||||||||||| ||||||| ||||||||||||||||| || ||  ||||||||| ||| ||||||| ||| ||||| ||||||    
T  6238127 ttgattctcgtgttgactcttaaccacccaacactccgtaccatacaacatcgtcagtctaactgttgtccgatagaattttcttttcaacttaagtggt 6238226  T
Q  162 actttcttatcatataaaacacctgaagctcttctccatttcaaccatccaact 215  Q
    | ||| |||||| | ||||||| ||| |||||||||||||||||||||||||||    
T  6238227 a-ttttttatcacacaaaacacatgaggctcttctccatttcaaccatccaact 6238279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 41763369 - 41763557
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||| | ||||| ||||||||||| ||| ||| ||| | | |||||||||||||||||| || |||||||||||||||||||||| |      
T  41763369 cttaccactcatccatcgcaacatcctcatctccgctacacttactttactctcgtgttggttcttaaccgcccaacactctgtaccatacaacattgcc 41763468  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaa 205  Q
     | |||  |||| | | ||| || |||||||||| ||| |||||||||||||||||  | ||||||||||| |||||||||||||||||    
T  41763469 ggtctgattgttcttcgatagaactttccttttagcttaagtggtactttcttatcgcacaaaacacctgaggctcttctccatttcaa 41763557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 3866026 - 3865835
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||||| ||||| | ||||||| | ||| ||| ||||||| || |||||  ||||||||  | ||||||| ||||||||||||| |||     
T  3866026 cttaccactcatccaacgcaacatcatcatctctgctacacttacttgattctcatgttgactcttaaccgtccaacactccgtaccatacaacaacgtc 3865927  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | ||| ||||||||| ||| || |||||||| ||||| ||| |||||||||||||| | |||||| |||| ||||||||||||||||||||    
T  3865926 ggtctgactgttgtccgatagaactttcctttcaacttaagtagtactttcttatcacacaaaacatctgaggctcttctccatttcaacca 3865835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 8180734 - 8180543
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||||||||||| ||||||||| | ||| ||| ||||||| || |||||  ||||||||  | ||||||| ||||||||||||| || |    
T  8180734 cttaccactcatccaacacaacatcctcatctctgctacacttacttgattctcatgttgactcttaaccgtccaacactccgtaccatacaacaacgct 8180635  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | ||| ||| ||||| ||| || |||||||| ||||| |||||||||||||||||  | ||||| | ||| ||||||||||||||||||||    
T  8180634 ggtctgactgatgtccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaactcttgaggctcttctccatttcaacca 8180543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 451950 - 452141
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| || ||| |||||  |||||||| | ||| ||| ||||||| || |||||  |||||||| || ||||||| ||||||||||||| |||     
T  451950 cttaccactcatctaacgcaacatactcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaacaacgtc 452049  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | | | ||| ||||| ||| || |||||||| ||||| |||||||||||||||||  | ||||||||||| ||||||||||||||||||||    
T  452050 ggtcggactgctgtccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacacctgaggctcttctccatttcaacca 452141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 41197556 - 41197754
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| || | | ||||| ||||||||||| ||| ||| ||| | | ||||||||| |||||||| || |||||| ||||||||||||||| | |    
T  41197556 cttaccactcatctagcgcaacatcctcatctccgctacacttactttactctcgtgttggctcttaaccgcccaacactttgtaccatacaacattgct 41197655  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaaccatccaact 215  Q
     | ||| ||||||| | ||| || |||||||| | ||| ||||||||||| |||||  | |||||||||||  ||||||||||||||||||| ||||||    
T  41197656 ggtctgactgttgttcgatagaactttcctttcagcttaagtggtacttttttatcgcacaaaacacctgagactcttctccatttcaaccacccaact 41197754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 11992435 - 11992625
Alignment:
Q  18 ttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtta 117  Q
    ||||||||| |||| | ||||| ||||||||||| ||| ||| ||| | | ||||||||  |||||||| || | ||||| |||||||||||||| |       
T  11992435 ttaccactcatccagcgcaacatcctcatctccgctacacttactttactctcgtgttgactcttaaccgcccatcactccgtaccatacaacattgccg 11992534  T
Q  118 gcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
    | | | ||| ||||| ||| || |||||||| | ||| |||||||||||||||||  | ||||||||||| ||||||||||||||||||||    
T  11992535 gtcagactgctgtccgatagaactttcctttcagcttaagtggtactttcttatcgcacaaaacacctgaggctcttctccatttcaacca 11992625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 45367952 - 45368143
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    ||||||| || |||| | ||||| | ||||||||||||  ||| ||| | | ||||||||| |||||| | || | ||||| ||||| |||||||| ||     
T  45367952 cttaccattcatccagcgcaacatcatcatctccgttatacttactttactctcgtgttggctcttaatcgcccagcactccgtaccttacaacattgtc 45368051  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | ||| ||||||||| ||| || |||||||| | ||| |||||||||||||||||  | |||||||||||  |||||||||||||||||||    
T  45368052 ggtctgactgttgtccgataaaactttcctttcagcttaagtggtactttcttatcgcacaaaacacctgagactcttctccatttcaacca 45368143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 4807546 - 4807355
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    ||||||| || |||||| ||||| ||||||||| | ||| ||| ||| ||| || |||||  |||||||| |  ||||||||||  ||||||||| |||     
T  4807546 cttaccattcatccaacgcaacatcctcatctctgctacacttacttaattctcatgttgactcttaaccgctcaacactctgtgtcatacaacaacgtc 4807447  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | | | ||| ||||| ||| || |||||||| ||||| | |||||||||||||||  | |||||||||||  |||||||||||||||||||    
T  4807446 ggtcggactgctgtccgatagaactttcctttcaacttaaatggtactttcttatcgcacaaaacacctgagactcttctccatttcaacca 4807355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 35 - 205
Target Start/End: Complemental strand, 30743559 - 30743389
Alignment:
Q  35 caacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgttagcctgtctgttgtccaa 134  Q
    ||||| ||||||||||   || ||| ||||||| ||||||||| | |||| | |||||| ||| |||||||||||||||||  | ||| | | | |||      
T  30743559 caacatcctcatctccacaacacttacttgattctcgtgttggcttttaatcgcctaactctccgtaccatacaacatcgtcggtctgaccgctatccgg 30743460  T
Q  135 tataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaa 205  Q
    || || |||||||| ||||| |||||||||||||||||| | ||||||| ||| ||||||||| |||||||    
T  30743459 taaaactttcctttcaacttaagtggtactttcttatcacacaaaacacatgaggctcttctcaatttcaa 30743389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 38429838 - 38429743
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacat 112  Q
    |||||||||| |||||| ||||| ||||||||||| ||| ||| ||  | | |||||||||||||||||| || ||||||| ||||||||||||||    
T  38429838 cttaccactcatccaacgcaacatcctcatctccgctacacttactctactctcgtgttggttcttaaccgcccaacactccgtaccatacaacat 38429743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 169
Target Start/End: Complemental strand, 12734668 - 12734508
Alignment:
Q  4 tatcccttttagccttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtacc 103  Q
    |||||| | ||| |||||||||| |||| ||||||| ||||||||||  ||| ||||    ||| || |||||| ||| |||| || |||||||||||||    
T  12734668 tatcccgtctagtcttaccactcatccagcacaacatcctcatctccactacacttg----attctcatgttggctctaaaccgcccaacactctgtacc 12734573  T
Q  104 atacaacatcgttagcctgtctgttgtccaatataattttccttttaacttgagtggtactttctt 169  Q
    ||||||||||| | |  || ||||||| | ||| || |||||||| ||||| ||||||||||||||    
T  12734572 atacaacatcgatggtttgactgttgt-cgatagaactttcctttcaacttaagtggtactttctt 12734508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 208
Target Start/End: Original strand, 38453059 - 38453139
Alignment:
Q  128 tgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
    ||||| ||| || |||||||| ||||| |||||||||||||||||  | ||||||| ||| ||||||||||||||||||||    
T  38453059 tgtccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacacatgaggctcttctccatttcaacca 38453139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 32443524 - 32443473
Alignment:
Q  61 cttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacat 112  Q
    ||||||| |||||||| |||||||||||| ||||||||||||||||||||||    
T  32443524 cttgattctcgtgttgattcttaaccacccaacactctgtaccatacaacat 32443473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 36183405 - 36183311
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaaca 111  Q
    |||||||||| |||||| ||||| ||||||||| | ||| ||| ||||||| || |||||  |||||||| || ||||||| |||||||||||||    
T  36183405 cttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaaca 36183311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 24583928 - 24584032
Alignment:
Q  11 tttagccttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaac 110  Q
    ||||| |||||||||| |||  ||||||| | ||||||| | ||| ||| ||||||| ||||||||  |||||||| || |||| | |||||||||||||    
T  24583928 tttagtcttaccactcatcccgcacaacatcttcatctctgctacacttacttgattctcgtgttgactcttaaccgcccaacattttgtaccatacaac 24584027  T
Q  111 atcgt 115  Q
    |||||    
T  24584028 atcgt 24584032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 3243979 - 3244170
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    ||||| |||| |||||| ||||| ||| ||||| | ||| ||| ||||||| || |||||  |||||||   | ||||||| ||||||| ||||| ||      
T  3243979 cttactactcatccaacgcaacatccttatctctgctacacttacttgattctcatgttgactcttaactgtccaacactccgtaccattcaacaacgcc 3244078  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | | | ||| ||||| ||| || |||||||| ||| | |||||||||||||||||  | ||||||||||| |||| |||||||||| ||||    
T  3244079 ggtcggactgctgtccgatagaactttcctttcaacataagtggtactttcttatcgcacaaaacacctgaggctcatctccatttctacca 3244170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 115
Target Start/End: Complemental strand, 37282050 - 37281963
Alignment:
Q  28 tccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgt 115  Q
    |||||||||||| |||||||||   ||  ||| ||||||| |||| ||| ||||||||| | |||||||||||| |||||||||||||    
T  37282050 tccaacacaacatcctcatctcaactatacttacttgattctcgtattgattcttaaccgcttaacactctgtatcatacaacatcgt 37281963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 186
Target Start/End: Complemental strand, 23997571 - 23997402
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||| | ||||| | ||||||||||||| ||| ||||  | ||||||||  |||||||  || ||||||  |||||||||||||| ||     
T  23997571 cttaccactcatccagcgcaacatcttcatctccgttacacttacttggctctcgtgttgactcttaactgcccaacacttcgtaccatacaacattgtc 23997472  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctg 186  Q
     | ||  ||||||||| ||| || |||||||| | ||| ||||||| ||||| |||  | ||||||||||    
T  23997471 ggtcttactgttgtccgatagaactttcctttcagcttaagtggtattttctcatcgcacaaaacacctg 23997402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 17581270 - 17581224
Alignment:
Q  169 tatcatataaaacacctgaagctcttctccatttcaaccatccaact 215  Q
    ||||| |||||||||||||  ||||||||||||| ||||||||||||    
T  17581270 tatcacataaaacacctgagactcttctccatttgaaccatccaact 17581224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 34827430 - 34827628
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||||||||||| ||||||||| ||||| |||  ||| |||||||||||||||||||||    ||||||||||||||||||||||||||    
T  34827430 cttaccactcatccaacacaacatcctcatctcagttacacttatttgtttttcgtgttggttcttaaccgaacaacactctgtaccatacaacatcgtt 34827529  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaaccatccaact 215  Q
       ||| ||||||||||||||||||||||||| || || ||  |||||||||||||| ||||||||| ||| ||||||||||||||||||||| |||||    
T  34827530 gatctgactgttgtccaatataattttcctttcaatttaagcagtactttcttatcacataaaacacatgaggctcttctccatttcaaccattcaact 34827628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 9592688 - 9592490
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||||| ||||| ||||||||| | ||| ||| ||||||| || ||||| ||||||||| || ||||||| ||||||||||||| |||     
T  9592688 cttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttgattcttaaccgcccaacactccgtaccatacaacaacgtc 9592589  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaaccatccaact 215  Q
    || ||| || |||||| ||| || |||||||| ||||| |||||||||||||||||  | |||||||| ||  ||||||||||||||||||| ||||||    
T  9592588 agtctgactattgtccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacacccgagactcttctccatttcaaccacccaact 9592490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 30202458 - 30202649
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||||| ||||| ||||||||| | ||| ||| ||||||| || |||||  |||||||| || |||||||||||||| |||||| ||      
T  30202458 cttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactctgtaccacacaacaacgcc 30202557  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | | | ||||||||| ||| || |||||||| ||||| |||||||||||||||||  | ||||||||||| ||||||||||||||||||||    
T  30202558 ggtcggactgttgtccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacacctgaggctcttctccatttcaacca 30202649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 32083073 - 32083264
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||| | ||||| ||||||||||| ||| | | ||| | | ||||||||  |||||||| || |||||||||||||||||||||| ||     
T  32083073 cttaccactcatccagcgcaacatcctcatctccgctacacatactttactctcgtgttgactcttaaccgcccaacactctgtaccatacaacattgtc 32083172  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | ||| ||||||||  ||| || |||||||| | ||| |||||||||||||||||  ||| ||||||||| ||||||||||||||||||||    
T  32083173 ggtctgactgttgtctgatagaactttcctttcagcttaagtggtactttcttatcgcatagaacacctgaggctcttctccatttcaacca 32083264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 208
Target Start/End: Complemental strand, 19936489 - 19936285
Alignment:
Q  4 tatcccttttagccttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtacc 103  Q
    |||||| | ||| |||||||||| ||||||||||||  |||||||||| || ||||  |||||| || ||||||||||||||| || |||||||| ||||    
T  19936489 tatcccatctagtcttaccactcatccaacacaacattctcatctccgctatgcttatttgattctcatgttggttcttaaccgcccaacactctatacc 19936390  T
Q  104 atacaacatcgttagcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttc 203  Q
     || ||||| | | | ||  ||| ||||| ||||||||||||||| |  || || ||||||||||||||| ||||||||| ||| | |||| ||||||||    
T  19936389 ctataacattgctggtctaactgctgtccgatataattttcctttcattttaagcggtactttcttatcacataaaacacttgaggttcttatccatttc 19936290  T
Q  204 aacca 208  Q
    |||||    
T  19936289 aacca 19936285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 49347721 - 49347912
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||||| ||||| ||||||||  | ||| ||| ||||||| || |||||  |||||||| || ||||||  |||||||||||||  |||    
T  49347721 cttaccactcatccaacgcaacatcctcatctttgctacacttacttgattctcatgttgactcttaaccgcccaacacttcgtaccatacaacaaggtt 49347820  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | | | ||| ||||| ||| | ||||||||| ||||| |||||||||||||||||  | ||||||||||| ||||||||||||||||||||    
T  49347821 ggtcggactgctgtccgatagatttttcctttcaacttaagtggtactttcttatcgcacaaaacacctgaggctcttctccatttcaacca 49347912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 4 - 213
Target Start/End: Original strand, 9599709 - 9599918
Alignment:
Q  4 tatcccttttagccttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtacc 103  Q
    |||||| | ||| |||||||||| |||||||||||| ||||||||| | ||||||| ||||||| | ||||||||||| |||| |  |||||| |||| |    
T  9599709 tatcccgtctagtcttaccactcatccaacacaacatcctcatctctgctacgcttacttgattattgtgttggttctcaaccgcacaacactttgtatc 9599808  T
Q  104 atacaacatcgttagcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttc 203  Q
    |||| |||||| | | ||| |||  |||  ||| ||||||| ||| ||||  || ||||||||||||||| ||||||||| ||| |||||| |||||||     
T  9599809 ataccacatcgctggtctgactgcggtctgatagaattttcatttcaactgaagcggtactttcttatcacataaaacacttgaggctcttatccattta 9599908  T
Q  204 aaccatccaa 213  Q
    ||||| ||||    
T  9599909 aaccacccaa 9599918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 43240709 - 43240900
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||||| ||||| ||||||||| | ||| ||| ||||||| || |||||  |||||||| || ||||||| ||| ||||||||| ||      
T  43240709 cttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttgactcttaacctcccaacactccgtatcatacaacaacgcc 43240808  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | | | ||| ||||| ||| || |||||||| ||||| ||||||||||||||||   | ||||||||||| ||||||||||||||||||||    
T  43240809 ggtcggactgctgtccgatagaactttcctttcaacttaagtggtactttcttattgcacaaaacacctgaggctcttctccatttcaacca 43240900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 51441093 - 51441283
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    ||||||||||||||||  ||||| ||||||||| | ||| ||  ||||||| || |||||  |||||||| || ||||||| ||||||||||||| |||     
T  51441093 cttaccactcgtccaatgcaacatcctcatctctgctacactcacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaacaacgtc 51441192  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | | | ||| ||||| ||| || |||||||| ||||| |||||||||||||||||  | ||||||| ||| ||||||||||||||||||||    
T  51441193 ggtcggactgctgtccgatagaactttcctttcaacttaagtggtactttcttatcgca-aaaacacttgaggctcttctccatttcaacca 51441283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 1210699 - 1210508
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||||| ||||| ||||||||| | ||| ||| ||||||| || |||||  |||||||| || ||||||| ||||||||||||| ||      
T  1210699 cttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaacaacgcc 1210600  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | |   ||| ||||| ||| || |||||||| ||||| |||||||||||||||||  | ||||||||| | |||||||| |||||||||||    
T  1210599 ggtcgaactgctgtccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacacctcaggctcttcttcatttcaacca 1210508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 8391726 - 8391533
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccataca--acatcg 114  Q
    |||||||||| |||||||||||| | ||||||||| ||| ||| ||| | | ||||||||  |||||||| || |||||||||||||||| |  |||| |    
T  8391726 cttaccactcatccaacacaacatcttcatctccgctacacttactttactctcgtgttgactcttaaccgcccaacactctgtaccatatacgacattg 8391627  T
Q  115 ttagcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
       | ||| ||| ||||| ||| ||  ||||||| | ||| |||||||||||||||||  | ||||||||||| ||||||||||||||||||||    
T  8391626 ccggtctgactgctgtccgataaaacattcctttaagcttaagtggtactttcttatcgcacaaaacacctgaggctcttctccatttcaacca 8391533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 61 - 208
Target Start/End: Original strand, 37463239 - 37463384
Alignment:
Q  61 cttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgttagcctgtctgttgtccaatataattttccttttaacttgagtgg 160  Q
    ||||||| | ||||||||||||||||||| |||||||||||||||||||||| | ||| ||| ||||||||  ||| ||||||||||| ||||| |   |    
T  37463239 cttgattcttgtgttggttcttaaccacccaacactctgtaccatacaacattgctagtctgactgttgtctgatagaattttcctttcaacttaatcag 37463338  T
Q  161 tactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
    | |||||||||||  |  ||||||| | |||||||||||| |||||||    
T  37463339 tgctttcttatcacct--aacacctaaggctcttctccatatcaacca 37463384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 171
Target Start/End: Complemental strand, 696223 - 696069
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||| | ||||| ||||||||||| ||| ||| ||| | | ||||||||| ||||||||||| ||||||| |||||||||||||| |      
T  696223 cttaccactcatccagcgcaacatcctcatctccgctacacttactttactctcgtgttggctcttaaccacccaacactccgtaccatacaacattgcc 696124  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttat 171  Q
     | ||| ||| ||||| ||| || |||||||| | ||| ||||||||||||||||    
T  696123 ggtctgactgctgtccgatagaactttcctttcagcttaagtggtactttcttat 696069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 8671874 - 8671683
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||||| ||||| ||| ||||| | ||| ||| ||||||| || |||||  ||||||||  | |||| |  ||||||||||||| ||      
T  8671874 cttaccactcatccaacgcaacatccttatctctgctacacttacttgattctcatgttgactcttaaccgtccaacatttcgtaccatacaacaacgcc 8671775  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | ||| ||||||||  ||| || |||||||| ||||| |||||||||||||||||  | |||||||||||  ||||||||||||| |||||    
T  8671774 ggtctgactgttgtctgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacacctgagtctcttctccattttaacca 8671683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 22090048 - 22089857
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| ||||||||| || ||||||||| | ||| ||| ||||||| || |||||  |||||||| || ||||||| |||||| |||||| ||      
T  22090048 cttaccactcatccaacacagcatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccacacaacaacgcc 22089949  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | | | ||| ||||| ||| || |||||||| ||||| ||||||| ||||||||   | |||||| ||||  |||||||||||||||||||    
T  22089948 ggtcggactgctgtccgatagaactttcctttcaacttaagtggtattttcttattgcacaaaacatctgagactcttctccatttcaacca 22089857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 215
Target Start/End: Original strand, 46226613 - 46226808
Alignment:
Q  20 accactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgttagc 119  Q
    ||||||| |||||| ||||| | ||||||||| ||  ||| ||||||| ||||||||||| ||||   |  |||| |  ||||||||||||||||| |      
T  46226613 accactcatccaacgcaacatcatcatctccgctaaacttacttgattctcgtgttggttgttaattgctcaacatttcgtaccatacaacatcgtcact 46226712  T
Q  120 ctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaaccatccaact 215  Q
     || | ||||||  ||| |||||| |||| ||||| ||   |||||||||| || ||||||||| ||| |||||||||||||||||||||||||||    
T  46226713 atgacagttgtctgatagaatttttctttcaacttaagcactactttcttagcacataaaacacttgatgctcttctccatttcaaccatccaact 46226808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 41 - 215
Target Start/End: Original strand, 11331416 - 11331590
Alignment:
Q  41 cctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgttagcctgtctgttgtccaatataat 140  Q
    ||||||||||| || |||  ||||||| | |||||||||| || || |  ||||||||||||||||||||||||| |  |||  |||||||  |||||||    
T  11331416 cctcatctccgctatgctaacttgattcttgtgttggttcctagccgcacaacactctgtaccatacaacatcgtcaatctgattgttgtctgatataat 11331515  T
Q  141 tttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaaccatccaact 215  Q
    |||||||| ||||| |   |||| || |||||| |||||||||||   ||  |||||||||| ||||||||||||    
T  11331516 tttcctttcaacttaatcagtacatttttatcacataaaacacctacggccattctccatttaaaccatccaact 11331590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 41 - 215
Target Start/End: Original strand, 11489437 - 11489611
Alignment:
Q  41 cctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgttagcctgtctgttgtccaatataat 140  Q
    ||||||||||| || |||  ||||||| | |||||||||| || || |  ||||||||||||||||||||||||| |  |||  |||||||  |||||||    
T  11489437 cctcatctccgctatgctaacttgattcttgtgttggttcctagccgcacaacactctgtaccatacaacatcgtcaatctgattgttgtctgatataat 11489536  T
Q  141 tttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaaccatccaact 215  Q
    |||||||| ||||| |   |||| || |||||| |||||||||||   ||  |||||||||| ||||||||||||    
T  11489537 tttcctttcaacttaatcagtacatttttatcacataaaacacctacggccattctccatttaaaccatccaact 11489611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 15085888 - 15085793
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacat 112  Q
    ||||||||||||||| | ||||| ||||||||||| ||| ||| ||| | | ||||||||| |||||||| || ||||||| ||||||||||||||    
T  15085888 cttaccactcgtccagcgcaacatcctcatctccgctacacttactttactctcgtgttggctcttaaccgcccaacactccgtaccatacaacat 15085793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 172
Target Start/End: Complemental strand, 39140466 - 39140313
Alignment:
Q  18 ttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtta 117  Q
    ||||||||| |||||| ||||| |||||||||   ||||||| |||||||||| || |||||||||||  || ||||||| |||||||||||||||        
T  39140466 ttaccactcatccaacgcaacatcctcatctctactacgcttacttgattttcatgatggttcttaactgcccaacactc-gtaccatacaacatcaccg 39140368  T
Q  118 gcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatc 172  Q
    | ||| ||| ||||| ||| ||||| ||||| || || || ||||||||||||||    
T  39140367 gtctgactgctgtccgatagaatttgcctttcaatttaagcggtactttcttatc 39140313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 4379959 - 4379862
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcg 114  Q
    |||||||| | |||||||||||| ||||||||| | || ||||  || |||||||||||||||||| ||  ||||||||||||| || ||||||||||    
T  4379959 cttaccacacatccaacacaacatcctcatctcagctaagctttatttattttcgtgttggttctttactgcctaacactctgtcccgtacaacatcg 4379862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 208
Target Start/End: Complemental strand, 7814366 - 7814226
Alignment:
Q  69 tcgtgttggttcttaaccacctaacactctgtaccatacaacatcgttagcctgtctgttgtc-caatataattttccttttaacttgagtggtactttc 167  Q
    ||||||||||||||||||| | |||| ||||| |||||||||||| | || |||   |||||| || ||||||||| | || |||||||| |||| ||||    
T  7814366 tcgtgttggttcttaaccatccaacattctgttccatacaacatcatcagtctgaaagttgtctcagtataatttttccttcaacttgagcggtattttc 7814267  T
Q  168 ttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     ||||| ||||||||| |||  ||||||  |||||||||||    
T  7814266 atatcacataaaacacttgagactcttcctcatttcaacca 7814226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 18469408 - 18469530
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| | |||| || || | ||||||||| |||| || ||||||| |||||||||||||||||| || |  |||  ||| ||||||||||| ||    
T  18469408 cttaccactcatacaacgcagcatcgtcatctccgctacgtttacttgattctcgtgttggttcttaaccgcccagtacttagtatcatacaacatcttt 18469507  T
Q  117 agcctgtctgttgtccaatataa 139  Q
     ||||| ||| ||||||||||||    
T  18469508 ggcctgactgatgtccaatataa 18469530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 27445728 - 27445654
Alignment:
Q  141 tttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaaccatccaact 215  Q
    |||||||| || || |||||||||||||||||| |||||||||  | | ||||||||||||||||||| ||||||    
T  27445728 tttcctttcaatttaagtggtactttcttatcacataaaacactcggaactcttctccatttcaaccaaccaact 27445654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 51234447 - 51234370
Alignment:
Q  138 aattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaaccatccaact 215  Q
    |||||||| || |||||||| ||| ||||| ||||| |||||| |||||| ||| |||||||||||||||| ||||||    
T  51234447 aattttcccttcaacttgagcggtgctttcgtatcacataaaagacctgaggctattctccatttcaaccacccaact 51234370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 51602012 - 51601821
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| || ||| ||||| |||||| ||   ||| ||| ||||||| || |||||  ||||||||||| ||||||| ||||||||||||| ||      
T  51602012 cttaccactcatctaacgcaacatcctcatatctactacacttacttgattctcatgttgactcttaaccacccaacactccgtaccatacaacaacgcc 51601913  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | | | ||  ||||| ||| || |||| ||| ||||| || ||||||||||||||  | |||||||||||  |||||||| ||||| ||||    
T  51601912 ggtcggactactgtccgatagaactttcatttcaacttaaggggtactttcttatcgaacaaaacacctgagactcttctctatttccacca 51601821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 115
Target Start/End: Complemental strand, 40419569 - 40419495
Alignment:
Q  41 cctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgt 115  Q
    ||||||||| | ||| ||| ||| || ||||||||||||||| |||||| |||||||||| || |||||||||||    
T  40419569 cctcatctctgctacacttactttatgttcgtgttggttctttaccacccaacactctgttccgtacaacatcgt 40419495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 34792677 - 34792768
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaa 109  Q
    |||||||||| |||| | ||||| ||||||||| | ||| ||| ||||||| ||||||||  |||||||| || ||||||| |||||||||||    
T  34792677 cttaccactcatccagcgcaacatcctcatctctgctacactt-cttgattctcgtgttgactcttaaccgcccaacactccgtaccatacaa 34792768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 51234575 - 51234503
Alignment:
Q  10 ttttagccttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttctt 82  Q
    |||||| |||||||| |||||||||||||| |||||||| | |||||| |  || |||| |||||||||||||    
T  51234575 ttttagtcttaccacacgtccaacacaacatcctcatctaccttacgcctattttatttgcgtgttggttctt 51234503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 205
Target Start/End: Original strand, 12807539 - 12807602
Alignment:
Q  142 ttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaa 205  Q
    ||||||| |||||||||||||||||| ||||| |||| |||   || |||||||||||||||||    
T  12807539 ttcctttcaacttgagtggtactttcatatcacataagacattagaggctcttctccatttcaa 12807602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 26016391 - 26016296
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacat 112  Q
    |||||||| | |||||| ||||| ||||||||| | ||||||| ||| || ||| ||||||||||| ||| || |||||| ||| ||||| |||||    
T  26016391 cttaccacacatccaacgcaacatcctcatctctgctacgcttactttatgttcttgttggttctttaccgcccaacactttgtcccataaaacat 26016296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Original strand, 32066761 - 32066797
Alignment:
Q  179 aacacctgaagctcttctccatttcaaccatccaact 215  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  32066761 aacacctgaggctcttctccattttaaccatccaact 32066797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 212
Target Start/End: Complemental strand, 39946811 - 39946616
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||||| ||||| ||||||||| | ||| ||| ||||||| ||||||||  |||||||| || |||| || ||||||||||||||||      
T  39946811 cttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcgtgttgactcttaaccgcccaacattccgtaccatacaacatcgcc 39946712  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaaccatcca 212  Q
     ||||| ||| ||||| ||| || |||||||| || || |||||||||||||||||  | ||||||||| | ||||||||||||||||||||||||    
T  39946711 ggcctgactgctgtccgatagaactttcctttcaatttaagtggtactttcttatcgcacaaaacacctaaggctcttctccatttcaaccatcca 39946616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 42 - 209
Target Start/End: Complemental strand, 18125104 - 18124938
Alignment:
Q  42 ctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgttagcctgtctgttgtccaatataatt 141  Q
    |||||||||| ||| ||| ||||||| || |||||| |||||||| || ||||||| |||||||||||||| ||| | ||| ||||||||| ||| || |    
T  18125104 ctcatctccgctacacttacttgattctcatgttggctcttaaccgcccaacactccgtaccatacaacattgttggtctgactgttgtccgatagaact 18125005  T
Q  142 ttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaaccat 209  Q
    ||||||| ||| | |||||||||||||||||| ||||||||||||| | | |||||||||||||||||    
T  18125004 ttcctttcaac-taagtggtactttcttatcacataaaacacctgaggtttttctccatttcaaccat 18124938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 36565569 - 36565760
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||||| || || ||||||||| | ||| ||| ||||||| || | |||  |||||||| || ||||||| ||||||||||||| ||      
T  36565569 cttaccactcatccaacgcatcatcctcatctctgctacacttacttgattctcatattgactcttaaccgcccaacactccgtaccatacaacaacgcc 36565668  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | ||| ||| ||||| ||| || |||||||| ||||| |||||||||||||||||  | ||||||||||| ||||||||||||||||||||    
T  36565669 ggtctgactgctgtccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacacctgaggctcttctccatttcaacca 36565760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 36545101 - 36544908
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||||||||||| ||||||||| | ||| ||| ||||||| || |||||  ||||||||||| ||||||| ||||||||||||| ||      
T  36545101 cttaccactcatccaacacaacatcctcatctctgctacacttacttgattctcatgttgactcttaaccacccaacactcggtaccatacaacaacg-- 36545004  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaaccatccaact 215  Q
       |||  || | ||| ||| || |||| ||| ||||| |||||||||||||||||  | ||||||||||| |||||| ||||||||||||| ||||||    
T  36545003 ---ctggttgctatccgatagaactttcttttcaacttaagtggtactttcttatcgcacaaaacacctgaggctcttatccatttcaaccacccaact 36544908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 37077718 - 37077528
Alignment:
Q  18 ttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtta 117  Q
    ||||||||| |||| | ||||| |||||||||||  || ||| ||||||| ||||||||| |||||||  || ||||||| |||||||||| |||||       
T  37077718 ttaccactcatccagcgcaacatcctcatctccgccacacttacttgattctcgtgttggctcttaactgcccaacactccgtaccatacagcatcgacg 37077619  T
Q  118 gcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
    | ||| ||||||||  | |||| || ||||| ||||| |||||||||| ||||||| | |||||||||||  |||||||||||||||||||    
T  37077618 gtctgactgttgtctgacataacttccctttcaacttaagtggtacttacttatcacacaaaacacctgagactcttctccatttcaacca 37077528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 69 - 208
Target Start/End: Original strand, 42854384 - 42854523
Alignment:
Q  69 tcgtgttggttcttaaccacctaacactctgtaccatacaacatcgttagcctgtctgttgtccaatataattttccttttaacttgagtggtactttct 168  Q
    ||||||||| |||||||| || ||||||| |||||||||||||| ||  | ||| ||| ||||| ||| ||||||||||| | ||| |||||||||||||    
T  42854384 tcgtgttggctcttaaccgcccaacactccgtaccatacaacattgtcggtctgactgctgtccgatagaattttcctttcagcttaagtggtactttct 42854483  T
Q  169 tatcatataaaacacctgaagctcttctccatttcaacca 208  Q
    ||||  | ||||||| ||| ||||||||||||||||||||    
T  42854484 tatcgcacaaaacacatgaggctcttctccatttcaacca 42854523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 172
Target Start/End: Complemental strand, 2796509 - 2796354
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||| | ||||| ||||||||  | ||| ||| ||||||| ||||||||  ||||||||||| || |||| |||||||| |||| |||     
T  2796509 cttaccactcatccagcgcaacatcctcatctttgctacacttacttgattctcgtgttgactcttaaccacccaagactcggtaccatataacaacgtc 2796410  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatc 172  Q
     | ||  |||||||||||||||| |||||||| ||||| |||||||||||||||||    
T  2796409 ggtctaactgttgtccaatataactttcctttcaacttaagtggtactttcttatc 2796354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 29735760 - 29735566
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    ||||||| || |||||||||||| ||||||||||  |||||||  || ||| ||||||||||| |||| |||  |||||||| |||||||||||||||||    
T  29735760 cttaccattcatccaacacaacatcctcatctccactacgcttatttcattctcgtgttggtttttaatcactcaacactctttaccatacaacatcgtt 29735661  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaaccatccaact 215  Q
       ||| ||  ||||| ||| ||||||| ||| ||||| ||  || |||||||| || |||| |||| |||| ||| ||||||||||||||| ||||||    
T  29735660 ---ctgactactgtccgatagaattttcatttcaacttaagcagtgctttcttaccagataacacacatgaa-ctcatctccatttcaaccacccaact 29735566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 124 - 215
Target Start/End: Original strand, 4032929 - 4033020
Alignment:
Q  124 ctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaaccatccaact 215  Q
    ||||||||| ||| || |||||||| ||||| |||||||||||||||||  | ||||||||||| |||||||||||||||||||| ||||||    
T  4032929 ctgttgtccgataaaactttcctttcaacttaagtggtactttcttatcgcacaaaacacctgaggctcttctccatttcaaccacccaact 4033020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 13984906 - 13984790
Alignment:
Q  99 gtaccatacaacatcgttagcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctcc 198  Q
    |||||||||||||| ||| | ||  | ||||||||||| ||||||||||||||||| |    || |||||||||| ||||||||| ||| |||||||| |    
T  13984906 gtaccatacaacattgttggtcttacggttgtccaatagaattttccttttaacttaaacaatattttcttatcacataaaacacttgaggctcttcttc 13984807  T
Q  199 atttcaaccatccaact 215  Q
    |||||||||||||||||    
T  13984806 atttcaaccatccaact 13984790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 12492170 - 12492367
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||||| ||||| |||||| || | ||| ||| | ||||| || |||||  |||||||| || ||||||| ||||||| ||||| ||      
T  12492170 cttaccactcatccaacgcaacatcctcatatctgctacacttacatgattctcatgttgactcttaaccgcccaacactccgtaccatgcaacaacgcc 12492269  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaaccatccaac 214  Q
     | | | | | ||||| ||| || |||||||| | ||| |||||||||||||||||  | ||||||| ||| |||||||||||||||||||| |||||    
T  12492270 ggtcggacggctgtccgatagaactttcctttcatcttaagtggtactttcttatcgcacaaaacacatgaggctcttctccatttcaaccacccaac 12492367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 25288856 - 25288668
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||  |||| | ||||| |||||| || | ||| |||  |||||| ||||||||| |||||||| || ||||||| ||| ||||||||||||      
T  25288856 cttaccactaatccagctcaacatcctcatatctgctacacttatttgattctcgtgttggctcttaaccgcccaacactccgtagcatacaacatcgcc 25288757  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaa 205  Q
     | |   |||||||   ||| || |||||||| ||||| | |||||||||||||||  | ||||||||||| |||||||||||||||||    
T  25288756 ggtcgaactgttgtgtgatagaactttcctttcaacttaattggtactttcttatcgcacaaaacacctgaggctcttctccatttcaa 25288668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 25300191 - 25300003
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||  |||| | ||||| |||||| || | ||| |||  |||||| ||||||||| |||||||| || ||||||| ||| ||||||||||||      
T  25300191 cttaccactaatccagctcaacatcctcatatctgctacacttatttgattctcgtgttggctcttaaccgcccaacactccgtagcatacaacatcgcc 25300092  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaa 205  Q
     | |   |||||||   ||| || |||||||| ||||| | |||||||||||||||  | ||||||||||| |||||||||||||||||    
T  25300091 ggtcgaactgttgtgtgatagaactttcctttcaacttaattggtactttcttatcgcacaaaacacctgaggctcttctccatttcaa 25300003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 211
Target Start/End: Complemental strand, 25439366 - 25439296
Alignment:
Q  141 tttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaaccatcc 211  Q
    |||||||| ||||| |||||||||||||||||| | |||||||| ||  ||||||||||||||||||||||    
T  25439366 tttcctttcaacttaagtggtactttcttatcacacaaaacacccgagactcttctccatttcaaccatcc 25439296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 15215599 - 15215694
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacat 112  Q
    |||||||||| |||| ||||||| ||||||||||| | | ||| ||| | | ||||||||| |||||||| || ||||||| ||||||||||||||    
T  15215599 cttaccactcatccagcacaacatcctcatctccgcttcacttactttactctcgtgttggctcttaaccgcccaacactccgtaccatacaacat 15215694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 209
Target Start/End: Original strand, 30113541 - 30113716
Alignment:
Q  33 cacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgttagcctgtctgttgtcc 132  Q
    |||||||  |||||||||  |||||||  || ||| || ||||||||||||||| | ||||| ||  || ||||||||||||| |   ||   ||||| |    
T  30113541 cacaacattctcatctcctctacgcttattttattctcatgttggttcttaaccgcataacattccatatcatacaacatcgtcaatttgatagttgttc 30113640  T
Q  133 aatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaaccat 209  Q
     |||||||||| |||| ||||| |  |||| |||||||||| ||||||||||||   ||||||||||||||||||||    
T  30113641 gatataatttttctttcaacttaatcggta-tttcttatcacataaaacacctgcgactcttctccatttcaaccat 30113716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 37256048 - 37256141
Alignment:
Q  20 accactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgt 115  Q
    ||||||| | |||| ||||| | ||||||||||  ||||| |||||||||| |||| ||| ||||| ||  |||||||||||||||||||||||||    
T  37256048 accactcattcaacgcaacatcatcatctccgt--cgcttacttgattttcttgttcgtttttaactactcaacactctgtaccatacaacatcgt 37256141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 214
Target Start/End: Original strand, 8879848 - 8879959
Alignment:
Q  103 catacaacatcgttagcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccattt 202  Q
    |||||||||| ||  | ||| ||| ||||| ||| || ||| |||| ||||| |||||||||||||||||  | ||||||||| | | ||||||| ||||    
T  8879848 catacaacatagtaggtctgactgctgtccgatagaacttttctttcaacttaagtggtactttcttatcgcacaaaacacctaaggttcttctctattt 8879947  T
Q  203 caaccatccaac 214  Q
    ||||||||||||    
T  8879948 caaccatccaac 8879959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 113
Target Start/End: Original strand, 13172032 - 13172073
Alignment:
Q  72 tgttggttcttaaccacctaacactctgtaccatacaacatc 113  Q
    ||||||||||||||| || |||||||||||||||||||||||    
T  13172032 tgttggttcttaaccgcccaacactctgtaccatacaacatc 13172073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 25985373 - 25985305
Alignment:
Q  138 aattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaac 206  Q
    |||||||| ||||||||||| ||||||| |  |||||||||||||| ||| || || ||||||||||||    
T  25985373 aattttccctttaacttgagcggtacttccgcatcatataaaacacttgaggcactcctccatttcaac 25985305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 205
Target Start/End: Original strand, 44681513 - 44681592
Alignment:
Q  126 gttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaa 205  Q
    ||||||| ||| |||||||  || || |||||||||| |||| ||||| ||| ||||| ||| |||||||||||||||||    
T  44681513 gttgtccgataaaattttcacttcaatttgagtggtattttcgtatcacatagaacacttgatgctcttctccatttcaa 44681592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 113
Target Start/End: Original strand, 9905232 - 9905310
Alignment:
Q  35 caacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatc 113  Q
    ||||| ||||||||||||||  ||  ||| ||| ||||||||||| ||||||  | |||||| ||||||||||||||||    
T  9905232 caacatcctcatctccgttatactaactttattctcgtgttggttattaaccgtccaacactatgtaccatacaacatc 9905310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 10824557 - 10824607
Alignment:
Q  158 tggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
    ||||| |||| ||||| |||||||||||||  |||||||||||||||||||    
T  10824557 tggtattttcgtatcacataaaacacctgagactcttctccatttcaacca 10824607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 13589251 - 13589199
Alignment:
Q  160 gtactttcttatcatataaaacacctgaagctcttctccatttcaaccatcca 212  Q
    ||||||||||||   ||||||||| | | ||||||||||||||||||||||||    
T  13589251 gtactttcttatagcataaaacacatcaggctcttctccatttcaaccatcca 13589199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 36143323 - 36143235
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccat 105  Q
    |||||||| || ||||||||||| ||||||||| | |||| |   || ||| |||||||||||||| ||| || |||||||||| ||||    
T  36143323 cttaccacacgaccaacacaacatcctcatctctgctacgttgattttattctcgtgttggttcttcaccgcccaacactctgttccat 36143235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 39953592 - 39953684
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaa 109  Q
    |||||||| | |||||| |||||  |||||||| | ||||||  ||| || ||||||||||||||| ||| |  |||||||||| ||||||||    
T  39953592 cttaccacacatccaacgcaacattctcatctctgctacgctaactttatgttcgtgttggttctttaccgctcaacactctgtcccatacaa 39953684  T

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Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 31005177 - 31004979
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||||| ||||| ||||||||| | ||| ||| ||||||| || |||||  |||||||| |||||||||| ||||||||||||| ||      
T  31005177 cttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcctaacactccgtaccatacaacaacgcc 31005078  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaaccatccaact 215  Q
     | | | ||| ||||| ||| || |||||||| ||||| |||||||||||||||||  | ||||||||||| |||||||||||||||||||| ||||||    
T  31005077 ggtcggactgctgtccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacacctgaggctcttctccatttcaaccacccaact 31004979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 33072908 - 33072710
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||||| ||||| | ||||||| | ||| |||  |||||| || |||||  |||||||| || ||||||||||||||||||||| ||      
T  33072908 cttaccactcatccaacgcaacatcatcatctctgctacacttatttgattctcatgttgactcttaaccgcccaacactctgtaccatacaacaacgcc 33072809  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaaccatccaact 215  Q
     | ||  ||||||||| ||| || |||||||||||||| |||||||||||||||||  | ||||||| ||| |||||||||||||||||||||||||||    
T  33072808 ggtctaactgttgtccgatagaactttccttttaacttaagtggtactttcttatcgcacaaaacacttgaggctcttctccatttcaaccatccaact 33072710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 35906529 - 35906720
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||||| ||||| ||||||||| | ||| ||| ||||||| || |||||  ||||||||||| ||||||| ||| ||||||||| ||      
T  35906529 cttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttgactcttaaccacccaacactccgtatcatacaacaacgcc 35906628  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | | | ||| ||||| ||| || |||||||| ||||| |||||||||||||||||  | ||||||||||||| ||||||||||||||||||    
T  35906629 ggtcggactgctgtccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacacctgaagatcttctccatttcaacca 35906720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 36651948 - 36651757
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||||| ||||| ||||||||| ||||| ||| ||||||| || |||||  |||||||| || ||||||| ||||||||||||| ||      
T  36651948 cttaccactcatccaacgcaacatcctcatctctgttacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaacaacgcc 36651849  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | | |  || ||||| ||| || |||||||| ||||| |||||||||||||||||  | ||||||||||| ||||||||||||||||||||    
T  36651848 ggtcggattgctgtccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacacctgaggctcttctccatttcaacca 36651757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 36869617 - 36869808
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||||||||||| ||||||||| | ||| ||| |||||||  |||||||  |||||  | |  |||| || ||||||||||||||||      
T  36869617 cttaccactcatccaacacaacatcctcatctctgctacacttacttgattcacgtgttgactcttagtcgctcaacattccgtaccatacaacatcgcc 36869716  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     ||||| ||||||||| ||| || |||||||| ||||| |||||||||||||||||  | ||||| ||||| ||||||||||||||||||||    
T  36869717 ggcctgactgttgtccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacccctgaggctcttctccatttcaacca 36869808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 30 - 208
Target Start/End: Original strand, 7189574 - 7189751
Alignment:
Q  30 caacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgttagcctgtctgttg 129  Q
    |||||||||| ||||||||||  || |||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||  | ||| ||  ||    
T  7189574 caacacaacatcctcatctccactatgcttacttgatttttgtgttggttcttaaccacccaacactctgtaccatacaacatcgtcggtctgactactg 7189673  T
Q  130 tccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
    | | ||| |||||  |||| || || |||  ||||||||||||| |||||||||||||  || ||||||||||||||||    
T  7189674 t-ctataaaatttctctttcaatttaagtaatactttcttatcaaataaaacacctgagacttttctccatttcaacca 7189751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 11593914 - 11593723
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||||| ||||| ||||||||| | ||| ||| ||||||| || |||||  ||||||||  | ||||||| ||||||||||||| ||      
T  11593914 cttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttgactcttaaccgtccaacactccgtaccatacaacaacgcc 11593815  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | |   ||||||||| ||| || |||||||| ||||| ||||||||||| |||||  | ||||||||||| ||||||||||||||||||||    
T  11593814 ggtcgaactgttgtccgatagaactttcctttcaacttaagtggtacttttttatcgcacaaaacacctgaggctcttctccatttcaacca 11593723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 34869374 - 34869183
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||||| ||||| |||||||||   ||| ||| ||||||| || |||||  |||||||| || ||||||| ||||||||||||| ||      
T  34869374 cttaccactcatccaacgcaacatcctcatctctactacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaacaacgcc 34869275  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | ||| ||| ||||| ||| || |||||||| ||||| |||||||||||||||||  | ||||| ||||| ||||||||||| ||||||||    
T  34869274 ggtctgactgctgtccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacgcctgaggctcttctccaattcaacca 34869183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 38606959 - 38606768
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||| | |||||   ||||||||| ||| ||| ||| | | ||||||||| |||||||| || ||||||| |||||||||||||| |      
T  38606959 cttaccactcatccagcgcaacattatcatctccgctacacttactttactctcgtgttggctcttaaccgcccaacactccgtaccatacaacattgcc 38606860  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | ||| ||||||||| ||| || |||||||| | ||| |||||||||||||||||  | ||||||||| | ||||||||||||||||||||    
T  38606859 ggtctgactgttgtccgatagaactttcctttcagcttaagtggtactttcttatcgcacaaaacacctaaggctcttctccatttcaacca 38606768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 23404372 - 23404180
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||| ||| |||| | ||||| |||||| |||  ||| ||| ||||||| ||||| ||| | |||||| || || |||  ||||||||||| |||||     
T  23404372 cttaccgctcatccagcgcaacatcctcatttccaatacacttacttgattctcgtgctggcttttaaccgcccaaaacttcgtaccatacaatatcgtc 23404273  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaaccat 209  Q
     | ||| ||||||||| ||| ||||||||||| ||||| |||||| ||||||||||  | ||||||||||| |||||||||||||| ||||||    
T  23404272 ggtctgactgttgtccgatagaattttcctttcaacttaagtggtcctttcttatctcagaaaacacctgaggctcttctccattttaaccat 23404180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 33350134 - 33350325
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||||  ||||| ||||||||| | ||| ||| ||||||| || |||||  |||||||| || ||||||| ||||||||||||| ||      
T  33350134 cttaccactcatccaaggcaacatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaacaacgcc 33350233  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | | | ||| ||||| ||| || |||||| | ||||| |||||||||||||||||  | ||||||| ||| ||||||||||||||||||||    
T  33350234 ggtcggactgctgtccgatagaactttcctgtcaacttaagtggtactttcttatcgcacaaaacacttgaggctcttctccatttcaacca 33350325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 12841604 - 12841774
Alignment:
Q  18 ttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtta 117  Q
    ||||||||| |||||||||||| ||||||||| | ||| ||| ||||||| || |||||  ||||||||||| ||||||| ||||||||||||| ||       
T  12841604 ttaccactcatccaacacaacatcctcatctctgctacacttacttgattctcatgttgactcttaaccacccaacactccgtaccatacaacaacgccg 12841703  T
Q  118 gcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaa 188  Q
    | | | ||| ||| | ||| || |||||||| ||||| |||||||||||||||||  | ||||||||||||    
T  12841704 gtcagactgctgtacgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacacctgaa 12841774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 42 - 208
Target Start/End: Original strand, 39906728 - 39906894
Alignment:
Q  42 ctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgttagcctgtctgttgtccaatataatt 141  Q
    |||||||| | ||| ||| ||||||| || |||||  |||||| | |||||||||| ||||||||||||| ||   | ||| ||| ||||| ||| || |    
T  39906728 ctcatctctgctacacttacttgattctcatgttgactcttaatcgcctaacactccgtaccatacaacaacgccggtctgactgctgtccgatagaact 39906827  T
Q  142 ttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
    ||||||| ||||| |||||||||||||||||  | |||||| |||| ||||||||||||||||||||    
T  39906828 ttcctttcaacttaagtggtactttcttatcgcacaaaacatctgaggctcttctccatttcaacca 39906894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 32630549 - 32630360
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||| | ||||| ||||||||||| ||| ||| ||| | | |||||||||||||||||| || | ||||| |||||||||||||| ||     
T  32630549 cttaccactcatccagctcaacatcctcatctccgctacacttactttactctcgtgttggttcttaaccgcccagcactccgtaccatacaacattgtc 32630450  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaac 206  Q
     | |||  || ||||| ||| || |||||||| | ||| |||| ||||||||||||  | |||||||  || ||||||||||||||||||    
T  32630449 ggtctgattgatgtccgatagaactttcctttcagcttaagtgatactttcttatcgcacaaaacactcgaggctcttctccatttcaac 32630360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 4 - 208
Target Start/End: Complemental strand, 7273006 - 7272803
Alignment:
Q  4 tatcccttttagccttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtacc 103  Q
    |||||| | ||| |||||| ||| |||| ||||||| ||||||||||| ||| ||| ||||||| ||||||||| ||| |||| || ||||||||||| |    
T  7273006 tatcccgtgtagtcttaccgctcatccagcacaacatcctcatctccggtacacttacttgattctcgtgttggctctcaaccgcccaacactctgtatc 7272907  T
Q  104 atacaacatcgttagcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttc 203  Q
    ||||||||| ||  |  || ||| || || ||| || |||||| | ||||| |||||||||||||||||| | |||| |||||| ||| ||||| || ||    
T  7272906 atacaacattgtcggtttgactgctgaccgatacaactttcctctcaacttaagtggtactttcttatcacacaaaatacctgaggct-ttctcaatctc 7272808  T
Q  204 aacca 208  Q
    |||||    
T  7272807 aacca 7272803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 43281630 - 43281439
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||| | ||||| ||||||| ||| ||| ||| ||| | | | | ||||| |||||||| || |||||||||||||||||||||| |      
T  43281630 cttaccactcatccagcgcaacatcctcatccccgctacacttactttactcttgcgttggctcttaaccgcccaacactctgtaccatacaacattgcc 43281531  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     |  || ||| ||||| ||| || |||||||| | ||| |||||||||||||||||  | ||||| ||||| ||||||||||||||||||||    
T  43281530 ggtttgactgctgtccgatagaactttcctttcagcttaagtggtactttcttatcgcacaaaacgcctgaggctcttctccatttcaacca 43281439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 61 - 215
Target Start/End: Original strand, 46356223 - 46356377
Alignment:
Q  61 cttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgttagcctgtctgttgtccaatataattttccttttaacttgagtgg 160  Q
    ||||||| || |||||  |||||||| || ||||||| |||||||||||||  |   | ||| ||  ||||| ||| || |||||||| ||||| ||| |    
T  46356223 cttgattctcatgttgactcttaaccgcccaacactccgtaccatacaacaatgccggtctgactactgtccgatagaactttcctttcaacttaagtag 46356322  T
Q  161 tactttcttatcatataaaacacctgaagctcttctccatttcaaccatccaact 215  Q
    ||||||||||||  | ||||||||||| |||||||||||||||||||| ||||||    
T  46356323 tactttcttatcgcacaaaacacctgaggctcttctccatttcaaccacccaact 46356377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 208
Target Start/End: Complemental strand, 37616753 - 37616679
Alignment:
Q  134 atataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
    |||||| |||||||| ||||| |||||||||||||||||  | ||||||| ||| ||||||||||||||||||||    
T  37616753 atataactttcctttcaacttaagtggtactttcttatcgcacaaaacacttgaggctcttctccatttcaacca 37616679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 206
Target Start/End: Complemental strand, 48919233 - 48919153
Alignment:
Q  126 gttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaac 206  Q
    ||||||| ||||||  ||||||| ||||| || ||||||||||||||  | ||||||||||| ||||||||||||||||||    
T  48919233 gttgtccgatataaccttcctttcaacttaaggggtactttcttatcgcacaaaacacctgaggctcttctccatttcaac 48919153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 25579400 - 25579496
Alignment:
Q  18 ttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcg 114  Q
    ||||||| | |||||| ||||| ||||||||||  |||||||  || ||| |||||||||||||||||| || |||| || || |||||||||||||    
T  25579400 ttaccacacatccaacgcaacatcctcatctcctctacgcttattttattctcgtgttggttcttaaccgcccaacattccgttccatacaacatcg 25579496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 49029230 - 49029044
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| ||||||  |||| ||||||||| | ||| ||| ||||||| || |||||  |||||||| || ||||||| ||||||||||||| |       
T  49029230 cttaccactcatccaacgtaacatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaacaacacc 49029131  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     |   | ||| ||||| ||| || |||||||| |     ||||||| |||||||||  | ||||||||||| ||||||||||||||||||||    
T  49029130 ggttggactgctgtccgatagaactttcctttca-----agtggtattttcttatcgcacaaaacacctgaggctcttctccatttcaacca 49029044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 208
Target Start/End: Original strand, 24425958 - 24426040
Alignment:
Q  126 gttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
    ||||||||||| |||||||| || ||||| |||||||||| | ||||| ||||||||| | || |||||||  ||||||||||    
T  24425958 gttgtccaatagaattttcccttcaacttaagtggtacttacatatcacataaaacacttaaaactcttctatatttcaacca 24426040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 47848641 - 47848548
Alignment:
Q  4 tatcccttttagccttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactc 97  Q
    |||||| | ||| |||||||| | |||||||||||| ||||||||||  ||  |||  || ||| ||||||||||||||||||||| |||||||    
T  47848641 tatcccgtctagtcttaccacacatccaacacaacatcctcatctcccctagacttattttattctcgtgttggttcttaaccacccaacactc 47848548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 210
Target Start/End: Complemental strand, 12965847 - 12965788
Alignment:
Q  150 aacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaaccatc 210  Q
    |||||||||||||||||| ||||| ||||||||| ||| || | |||||||||||||||||    
T  12965847 aacttgagtggtactttcgtatcacataaaacacttgatgcac-tctccatttcaaccatc 12965788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 36514520 - 36514603
Alignment:
Q  4 tatcccttttagccttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaacca 87  Q
    |||||| ||||| |||||||| | |||||| ||||| ||||||||| | ||| |||  || |||||||||||||||||| ||||    
T  36514520 tatcccgtttagtcttaccacacatccaacgcaacatcctcatctctgctacacttaatttattttcgtgttggttctttacca 36514603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 37617898 - 37617811
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtacca 104  Q
    |||||||||| |||||| ||||| ||||||||| | ||| ||||||||||| || |||||  |||||||| || || |||| ||||||    
T  37617898 cttaccactcatccaacgcaacatcctcatctctgctacacttgcttgattctcatgttgactcttaaccgcccaagactccgtacca 37617811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 12965763 - 12965699
Alignment:
Q  150 aacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaaccatccaact 215  Q
    ||||||||||||| |||| ||||| ||||||||| ||| || | ||||||||||||||| ||||||    
T  12965763 aacttgagtggtattttcgtatcacataaaacacttgatgcac-tctccatttcaaccacccaact 12965699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 15681259 - 15681215
Alignment:
Q  69 tcgtgttggttcttaaccacctaacactctgtaccatacaacatc 113  Q
    ||||||||| |||||||| || |||||||| ||||||||||||||    
T  15681259 tcgtgttggctcttaaccgcccaacactctataccatacaacatc 15681215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 21517706 - 21517750
Alignment:
Q  69 tcgtgttggttcttaaccacctaacactctgtaccatacaacatc 113  Q
    |||||||||||||||||| || |||||| ||| ||||||||||||    
T  21517706 tcgtgttggttcttaaccgccaaacactatgttccatacaacatc 21517750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 20427966 - 20428155
Alignment:
Q  19 taccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgttag 118  Q
    |||||||| |||| | ||||| ||||||||||| ||| |||  |||| | ||||||||| ||||||||||| |||||||||||| |||||||||  ||||    
T  20427966 taccactcatccagcgcaacatcctcatctccgctacacttatttgactctcgtgttggctcttaaccacccaacactctgtactatacaacatttttag 20428065  T
Q  119 cctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
      || ||| ||||||||| || |||||||| | ||| |||||||||||||||||  | |||||||| || ||||||||||||||||||||    
T  20428066 tttgactgctgtccaatagaactttcctttcagcttaagtggtactttcttatcgcacaaaacacccgaggctcttctccatttcaacca 20428155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 6056098 - 6056296
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||||| ||||| || ||| ||   ||||||| ||||||||||||||||||||||||||||| ||||||| ||| |||| ||||| ||     
T  6056098 cttaccactcatccaacgcaacatccgcatttctactacgcttacttgattttcgtgttggttcttaaccacccaacactccgtatcatataacattgtc 6056197  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaaccatccaact 215  Q
     | ||| | ||||||| ||| |||| |||||| ||||| | || || |||||||||  ||||||||| |||||||||||| ||||||||||| ||||||    
T  6056198 ggtctgaccgttgtccgatagaattatcctttcaacttaaatgatattttcttatcgcataaaacacttgaagctcttctacatttcaaccacccaact 6056296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 5631772 - 5631581
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||||||||||| |||||||| || ||| ||| ||| | | ||| ||||| |||||||| || |||||||  ||||||||||||| ||     
T  5631772 cttaccactcatccaacacaacatcctcatcttcgctacacttactttactctcgcgttggctcttaaccgcccaacactccataccatacaacattgtc 5631673  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | ||| ||||||||| ||| ||||||||||| | ||| |||||||||||||||||  | |||||||| ||  |||||||||||||||||||    
T  5631672 ggtctgactgttgtccgatagaattttcctttcagcttaagtggtactttcttatcgcacaaaacacccgagactcttctccatttcaacca 5631581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 10100185 - 10100376
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| || ||| ||||| ||||||||||| ||| ||| ||||| | |||| |||| |||||||| || ||||||| |||||||||||||||||     
T  10100185 cttaccactcatctaacgcaacatcctcatctccgctacacttacttgactctcgtcttggctcttaacctcccaacactccgtaccatacaacatcgtc 10100284  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | ||| ||  ||||| ||| || |||||||| ||||| |||||||||||||||||  | ||||||| ||| ||||||||||||| ||||||    
T  10100285 ggtctgactactgtccgatagaactttcctttcaacttaagtggtactttcttatctcacaaaacacatgaggctcttctccattccaacca 10100376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 9706730 - 9706539
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| ||||   ||||| ||||||||||| ||| ||| ||| | | ||||||||  ||||||||||||||||||  |||||||||||||| |      
T  9706730 cttaccactcatccagtgcaacatcctcatctccgctacacttactttactctcgtgttgactcttaaccacctaacacttcgtaccatacaacattgcc 9706631  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | ||| ||| ||| | ||| || |||||||| | ||| |||||||||||||||||  | ||||||||||| ||||||||||||||||||||    
T  9706630 ggtctgactgctgttcgatagaactttcctttcagcttaagtggtactttcttatcgcacaaaacacctgatgctcttctccatttcaacca 9706539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 146
Target Start/End: Complemental strand, 30031223 - 30031081
Alignment:
Q  4 tatcccttttagccttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtacc 103  Q
    |||||| | ||| |||||||||| |||||||||||| ||||||||||| ||| ||  ||||||| || |||||| |||||||| || ||||||| |||||    
T  30031223 tatcccgtctagtcttaccactcatccaacacaacaacctcatctccgctacactaacttgattctcatgttggctcttaaccgcccaacactccgtacc 30031124  T
Q  104 atacaacatcgttagcctgtctgttgtccaatataattttcct 146  Q
    |||||||||| || | ||| ||| ||||| ||| || ||||||    
T  30031123 atacaacatcattggtctgactgctgtccgatagaactttcct 30031081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 208
Target Start/End: Complemental strand, 14030757 - 14030569
Alignment:
Q  20 accactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgttagc 119  Q
    ||||||| |||| | ||||| ||||||||| | ||| ||| ||| | | ||||||||  | |||||| || ||||||| |||||||||||||| | |||     
T  14030757 accactcatccatcgcaacatcctcatctctgctacacttactttactctcgtgttgacttttaaccgcccaacactccgtaccatacaacattgctagt 14030658  T
Q  120 ctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     || ||||||||| ||| || |||| ||| | ||| |||||||||||||||||  | |||||||||||  || ||||||||||||||||    
T  14030657 ttgactgttgtccgatagaactttcatttcagcttaagtggtactttcttatcgcacaaaacacctgagactattctccatttcaacca 14030569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 608113 - 607922
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| ||||||  |||| ||||||||||| ||| ||| ||| ||| ||||||||| |||||||| || ||||||| |||| ||||||||| |      
T  608113 cttaccactcatccaacggaacatcctcatctccgctacacttactttattctcgtgttggctcttaaccgcccaacactccgtacaatacaacattgcc 608014  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | ||| ||| ||||| ||| || ||| |||| |  || ||||||  | |||||||  | ||||||||||| ||||||||||||||||||||    
T  608013 ggtctgactgctgtccgatagaacttttctttcagtttaagtggtcatgtcttatcgcacaaaacacctgaggctcttctccatttcaacca 607922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 5258478 - 5258669
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||||| |||||  |||| ||||| ||| ||| |||   | ||||||||| ||||  || || ||||||| |||||||||||||| |      
T  5258478 cttaccactcatccaacgcaacattctcacctccgctacacttactttgctctcgtgttggctcttcgccgcccaacactccgtaccatacaacattgcc 5258577  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | ||| ||||||||| ||| || |||||||| | ||| ||||||||||||| |||  | ||||||| ||| ||||||||||||||||||||    
T  5258578 ggtctgactgttgtccgatagaactttcctttcagcttaagtggtactttctcatcgcaaaaaacacatgaggctcttctccatttcaacca 5258669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 212
Target Start/End: Complemental strand, 33496138 - 33495956
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    ||||||| || |||||  ||||| | ||||||||||||| ||| ||||||| || |||||||| ||||||  | |||||||||||||||||||||| |      
T  33496138 cttaccattcatccaatgcaacatcatcatctccgttacacttacttgattctcatgttggtttttaaccgtccaacactctgtaccatacaacattgca 33496039  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaaccatcca 212  Q
     | ||| |||||||||             ||| ||||| |||||||||||||||||| | |||||| ||||  |||||||||||||||||||||||    
T  33496038 ggtctgactgttgtcc-------------tttaaacttaagtggtactttcttatcacacaaaacatctgagactcttctccatttcaaccatcca 33495956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 206
Target Start/End: Original strand, 2065108 - 2065274
Alignment:
Q  41 cctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgttagcctgtctgttgtccaatataat 140  Q
    ||||||||||| ||| | | ||||||| ||||||||| ||||||||  | |||| || ||||||||||||||||  ||  |  | ||||||| ||| ||     
T  2065108 cctcatctccgctacacgtacttgattctcgtgttggctcttaaccgtccaacattccgtaccatacaacatcgccagttttacggttgtccgatagaag 2065207  T
Q  141 tttccttttaacttgagtggtactttcttatcatataaaacacctgaag-ctcttctccatttcaac 206  Q
    |||||||| ||||| ||  |||||||||||||| ||||||||||  ||| ||||| |||||||||||    
T  2065208 tttcctttcaacttaagatgtactttcttatcaaataaaacacccaaagtctcttttccatttcaac 2065274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 215
Target Start/End: Complemental strand, 30679384 - 30679230
Alignment:
Q  61 cttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgttagcctgtctgttgtccaatataattttccttttaacttgagtgg 160  Q
    ||||||| |||||||| ||||||||   | |||| | || |||||||||||||||  | ||| ||||||||  ||| || |||||||| |||||  ||||    
T  30679384 cttgattctcgtgttgattcttaactgtccaacattatgcaccatacaacatcgtcggtctgactgttgtctgatagaactttcctttcaacttatgtgg 30679285  T
Q  161 tactttcttatcatataaaacacctgaagctcttctccatttcaaccatccaact 215  Q
    ||||||||||||    |||||||||||  |||||||| |||||||||| ||||||    
T  30679284 tactttcttatcgctcaaaacacctgagcctcttctctatttcaaccacccaact 30679230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 212
Target Start/End: Complemental strand, 2689616 - 2689415
Alignment:
Q  11 tttagccttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaac 110  Q
    ||||| |||||  ||| |||| ||||||| ||||||||||  |||  || ||| ||| ||| ||||| | |||||| || ||||||| ||||||||||||    
T  2689616 tttagtcttactgctcatccatcacaacatcctcatctccactacatttacttaattctcgcgttggctgttaaccgcccaacactccgtaccatacaac 2689517  T
Q  111 atcgttagcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaaccatc 210  Q
    ||||   | ||| ||| ||||| ||  || |||||||| ||||| ||| || ||||||||||| | |||| || ||| || |||||||||||||| ||||    
T  2689516 atcgacggtctgactgctgtccgattgaactttcctttcaacttaagtagtgctttcttatcacacaaaatacatgaggcacttctccatttcaatcatc 2689417  T
Q  211 ca 212  Q
    ||    
T  2689416 ca 2689415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 28027153 - 28027250
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcg 114  Q
    |||||||||| ||||||| |||| |||| |||| | || |||| ||||||| || ||||||||||||||| || |||||||  |||||||||||||||    
T  28027153 cttaccactcatccaacataacatcctcgtctctgctatgcttacttgattctcatgttggttcttaacctcccaacactccataccatacaacatcg 28027250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 11295243 - 11295324
Alignment:
Q  32 acacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatc 113  Q
    |||||||| |||||||||   ||||||| |||||||||  ||||||||||||| | | ||||||| ||||||||| ||||||    
T  11295243 acacaacatcctcatctctactacgcttacttgatttttatgttggttcttaatcccttaacactttgtaccatataacatc 11295324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 208
Target Start/End: Complemental strand, 27791036 - 27790919
Alignment:
Q  91 aacactctgtaccatacaacatcgttagcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagc 190  Q
    |||||| ||||||||||||||||   | | || || |||||||||| |||||||||||  |||| || || | | ||||||||  |||||||| ||| ||    
T  27791036 aacactttgtaccatacaacatctccaacatgactattgtccaatagaattttcctttacactttagaggcaatatcttatcacgtaaaacacttgaggc 27790937  T
Q  191 tcttctccatttcaacca 208  Q
    ||||||| ||||||||||    
T  27790936 tcttctctatttcaacca 27790919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 51448037 - 51448228
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||||| ||||| ||||||||| | ||| |||  |||||| || |||||  |||||||| |||||||||| ||||||||||||| |||     
T  51448037 cttaccactcatccaacgcaacatcctcatctctgctacacttagttgattctcatgttgactcttaaccgcctaacactccgtaccatacaacaacgtc 51448136  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | | | ||| ||||| |||||| |||||||| ||||| |||||||||||||||||  | |||||||| || ||||||||||||||||||||    
T  51448137 ggtcggactgctgtccgatataactttcctttcaacttaagtggtactttcttatcgcacaaaacacccgaggctcttctccatttcaacca 51448228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 38850048 - 38849857
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    ||||| |||| |||| | ||||| ||||||||| | ||| ||| ||||||| ||||||||  |||||||| || |||||| ||||||||||||||||||     
T  38850048 cttactactcatccagcgcaacatcctcatctctgctacacttacttgattctcgtgttgactcttaaccgcccaacactttgtaccatacaacatcgtc 38849949  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     |  || ||||||||| ||| ||  || |||| ||||| ||||||||||| |||||  | ||||||||||| ||||||||||||||||||||    
T  38849948 ggtgtgactgttgtccgataaaaaatttctttcaacttaagtggtactttgttatcgcacaaaacacctgaggctcttctccatttcaacca 38849857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 27917526 - 27917339
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||||||||||| ||||||||| | ||||||| ||||||| |||| ||||||||||||  |  | |||| |||||||||||||||||      
T  27917526 cttaccactcatccaacacaacatcctcatctctgctacgcttacttgattctcgttttggttcttaactgcacatcactttgtaccatacaacatcgcc 27917427  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttca 204  Q
     |  || ||| ||| | ||| |||||| | || ||||| ||||||||||| |||||| ||||||||| ||| ||||||||| ||||||    
T  27917426 ggtgtgactgatgttcgatagaatttttcattcaacttaagtggtacttttttatcacataaaacacatgaggctcttctctatttca 27917339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 35 - 200
Target Start/End: Complemental strand, 5168764 - 5168599
Alignment:
Q  35 caacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgttagcctgtctgttgtccaa 134  Q
    ||||| ||||||||||| ||| ||| ||| | | || |||||| |||||||| || | ||||| |||||||||||||| |   | ||| ||||||||| |    
T  5168764 caacatcctcatctccgctacacttactttactctcatgttggctcttaaccgcccagcactccgtaccatacaacattgccggtctgactgttgtccga 5168665  T
Q  135 tataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccat 200  Q
    || ||||||||||| | ||| |||||||||||||||||  | ||||||||||| ||||||||||||    
T  5168664 tagaattttcctttcagcttaagtggtactttcttatcgcacaaaacacctgaggctcttctccat 5168599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 47542040 - 47542230
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||||| ||||| ||||||||| | ||| ||| ||| ||| || |||||  |||||||  || ||||||| ||||||||||||| ||      
T  47542040 cttaccactcatccaacgcaacatcctcatctctgctacactttctt-attctcatgttgactcttaactgcccaacactccgtaccatacaacaacgcc 47542138  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | | | | | ||||| ||| || |||||||| ||||| |||||||||||||||||  | ||||||||||| ||||||||||||||||||||    
T  47542139 ggtcagaccgctgtccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacacctgaggctcttctccatttcaacca 47542230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 30345477 - 30345283
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||| ||| |||||||||||| ||||||||||| ||    | ||| |||||| ||||||||||||||| || | ||||| |||| ||| ||||||||     
T  30345477 cttaccgctcatccaacacaacatcctcatctccgcta----tacttaattttcatgttggttcttaaccgcccatcactccgtacaatataacatcgtc 30345382  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaaccatccaact 215  Q
    |  |||  | | |||   || ||||||||||| || || || ||||||||||||||  |||||||||||||  ||||||||||||||||||| ||||||    
T  30345381 aatctgattttcgtctggtagaattttcctttcaatttaagcggtactttcttatcgcataaaacacctgagactcttctccatttcaaccacccaact 30345283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 25191333 - 25191142
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||| | ||||| ||||||||| | ||| ||| ||| | | ||||||||  |||||||  || ||||||||||||||||||||||        
T  25191333 cttaccactcatccagcgcaacatcctcatctctgctacacttactttactctcgtgttgactcttaacagcccaacactctgtaccatacaacatttcc 25191234  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | ||| || |||| | ||| ||  ||||||| ||||| |||||||||||||||||  | |||||||||||  |||||||||||||||||||    
T  25191233 ggtctgactattgttcgatagaaccttcctttcaacttaagtggtactttcttatcgcacaaaacacctgagactcttctccatttcaacca 25191142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 28245391 - 28245200
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||||| ||||| ||||||||  | ||| ||| ||| ||| || |||||  | |||||| || ||||||| ||||| ||||||| ||      
T  28245391 cttaccactcatccaacgcaacatcctcatctttgctacacttacttaattctcatgttgacttttaaccgcccaacactccgtaccgtacaacaacgcc 28245292  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | ||| ||| ||||| ||| || |||||||| ||||| |||||||||||||||||  | |||||| ||||  |||||||||||||||||||    
T  28245291 ggtctgactgctgtccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacaactgagactcttctccatttcaacca 28245200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 52138754 - 52138563
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||||| ||||| ||||||||| | ||| ||| ||||||| || | |||  |||||||| || ||||||  ||||||||||||| ||      
T  52138754 cttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatcttgactcttaaccgcccaacacttcgtaccatacaacaacgcc 52138655  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | | | ||| ||||| ||| || |||||||| ||||| ||||||| |||||||||  | || ||||||||  |||||||||||||||||||    
T  52138654 ggtcggactgctgtccgatagaactttcctttcaacttaagtggtattttcttatcgcacaagacacctgagactcttctccatttcaacca 52138563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 61 - 215
Target Start/End: Complemental strand, 3186679 - 3186525
Alignment:
Q  61 cttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgttagcctgtctgttgtccaatataattttccttttaacttgagtgg 160  Q
    ||||||| ||||||||  |||||| | || |||||| | || |||||||||||||| |   | ||||||||| |||||| |||||||| ||||| ||||     
T  3186679 cttgattctcgtgttgactcttaatcgcccaacactatatatcatacaacatcgttggtgggactgttgtccgatataactttcctttcaacttaagtga 3186580  T
Q  161 tactttcttatcatataaaacacctgaagctcttctccatttcaaccatccaact 215  Q
    |||||||||||||  |||||||| ||||  | |||| ||||||||||| ||||||    
T  3186579 tactttcttatcacctaaaacacatgaaaatattcttcatttcaaccacccaact 3186525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 43695093 - 43695190
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcg 114  Q
    ||||||| || |||||| ||||| ||||||||| ||||| ||| ||||||| |||||||  |||| ||||||| ||||||| ||||||||||||||||    
T  43695093 cttaccattcatccaacgcaacatcctcatctctgttacacttacttgattctcgtgttaattctcaaccacccaacactccgtaccatacaacatcg 43695190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 26490271 - 26490106
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccat--acaacatcg 114  Q
    |||||||||| |||||| ||||| ||||||||||| ||| ||| ||||||| || ||||||||||||||| || ||||  || ||||||  |||||||||    
T  26490271 cttaccactcatccaacgcaacatcctcatctccgctacacttacttgattctcttgttggttcttaaccgcccaacatact-taccatacacaacatcg 26490173  T
Q  115 ttagcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaac 181  Q
       | ||| ||||||||| ||||||||||||||| || || || |||| ||||| || | |||||||    
T  26490172 ccggtctgactgttgtccgatataattttcctttaaatttaagcggtattttctcattacataaaac 26490106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 53519539 - 53519353
Alignment:
Q  18 ttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtta 117  Q
    ||||||||| |||||| ||||| |||||| |||| ||| ||  ||| | | ||||||||| |||||||| | |||||||| |||| | ||||||| |       
T  53519539 ttaccactcatccaacgcaacatcctcatttccgctacactaactttactctcgtgttggctcttaaccgcttaacactccgtacaacacaacattgccg 53519440  T
Q  118 gcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttca 204  Q
      ||| ||| ||||| ||| | ||||||||| | ||| |||| ||||||||||||  | ||||||||||| ||||||||||||||||    
T  53519439 atctgactgctgtccgatagatttttcctttaagcttaagtgatactttcttatcgcacaaaacacctgaggctcttctccatttca 53519353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 208
Target Start/End: Original strand, 50621801 - 50621879
Alignment:
Q  130 tccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
    ||||||||||  |||| |||||||||||||||||| || ||||| |||||||| ||||  ||||| |||| ||||||||    
T  50621801 tccaatataacgttccctttaacttgagtggtactctcgtatcacataaaacatctgagactcttttccaattcaacca 50621879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 33272356 - 33272450
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaaca 111  Q
    |||||||||| |||||  ||||| ||||||||| | ||| ||| ||||||| || |||||  |||||||  || ||||||| |||||||||||||    
T  33272356 cttaccactcatccaatgcaacatcctcatctctgctacacttacttgattctcatgttgactcttaactgcccaacactccgtaccatacaaca 33272450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 40674562 - 40674632
Alignment:
Q  138 aattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
    ||||||||||| ||||| |||| ||||||||||||| |||||||| || |  |||||| ||| ||||||||    
T  40674562 aattttcctttcaacttaagtgatactttcttatcacataaaacatctcagactcttccccacttcaacca 40674632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 55244135 - 55244065
Alignment:
Q  138 aattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
    |||||||| || |||||||||||||||||  ||||| ||||||||||| | |  || ||||||||||||||    
T  55244135 aattttcccttcaacttgagtggtacttttgtatcaaataaaacacctaacgtcctcctccatttcaacca 55244065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 54425355 - 54425424
Alignment:
Q  138 aattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacc 207  Q
    ||||||||||  ||||| |||||||||||||||||| | ||||||| |||  ||||| | ||||||||||    
T  54425355 aattttccttccaacttaagtggtactttcttatcacacaaaacacatgagactctttttcatttcaacc 54425424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 2598 - 2789
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||||   |||| ||||||||| | ||| ||| ||||||| || |||||  |||||||| || |||||||  |||||||||||| |||     
T  2598 cttaccactcatccaatgaaacatcctcatctctgctacacttacttgattatcatgttgactcttaaccgcccaacactccataccatacaacaacgtc 2697  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
    || ||| ||| ||||| ||| || |||||||| ||||| |||||||||||||||||  | ||||||||||| ||||||||||||||||||||    
T  2698 agtctgactgctgtccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacacctgaggctcttctccatttcaacca 2789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 27450501 - 27450692
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||| | ||||| ||||||||||| ||| ||| ||| | | ||||||||| |||||||  || ||||||| |||||||||||||| ||     
T  27450501 cttaccactcatccagcgcaacatcctcatctccgctacacttactttactctcgtgttggctcttaactgcccaacactccgtaccatacaacattgtc 27450600  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | ||| ||||||||  ||| ||||||||||| | ||| |||||||||||||||||  | ||||||| ||| ||||||||||||||||||||    
T  27450601 ggtctgactgttgtctgatagaattttcctttcagcttaagtggtactttcttatcgcacaaaacacttgaggctcttctccatttcaacca 27450692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 1211719 - 1211907
Alignment:
Q  18 ttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtta 117  Q
    ||||||||| ||||   ||||| |||||| |||| ||| ||| ||||||| ||||||||| ||||||||  | |||||||||||||| ||||||||        
T  1211719 ttaccactcatccagtgcaacatcctcatatccgctacacttacttgattctcgtgttggctcttaaccgtccaacactctgtaccacacaacatcaccg 1211818  T
Q  118 gcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaac 206  Q
    | ||| ||||||||| ||| || |||||||| ||||| ||||||| |||||||||||| ||||||  ||| ||||||||||||||||||    
T  1211819 gtctgactgttgtccgatagaactttcctttcaacttaagtggtattttcttatcatacaaaacatttgaggctcttctccatttcaac 1211907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 436183 - 435992
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    ||||| |||| |||||| ||||| ||||||||| | ||| ||| ||||||| || |||||  |||||||| || ||||||| ||||||||||||| ||      
T  436183 cttacgactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaacaacgcc 436084  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | | | ||| ||||| ||| || |||||||| ||||| |||||||||||||||||  | ||||||||||| ||||||||||||||||||||    
T  436083 ggtcggactgctgtccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacacctgaggctcttctccatttcaacca 435992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 31960142 - 31960333
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||||| ||||| ||||||||| | ||| ||| ||||||| || |||||  |||||||| || ||||||| ||||||||||||| ||      
T  31960142 cttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaacaacgcc 31960241  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | ||| ||| ||||| ||| || |||||||| ||||| |||||||||||||||||  | ||||||  ||| ||||||||||||||||||||    
T  31960242 ggtctgactgctgtccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacatatgaggctcttctccatttcaacca 31960333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 45205163 - 45205273
Alignment:
Q  4 tatcccttttagccttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtacc 103  Q
    |||||| | ||| |||||||||| |||||||||||| ||||||||||| ||||||| ||||||| |||||||||||||||||  || ||||||| |||||    
T  45205163 tatcccgtctagtcttaccactcatccaacacaacatcctcatctccgctacgcttacttgattctcgtgttggttcttaactgcccaacactccgtacc 45205262  T
Q  104 atacaacatcg 114  Q
    |||||||||||    
T  45205263 atacaacatcg 45205273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 1777343 - 1777534
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||||| ||||| ||||||||  | ||  ||| |||||||||| |||||  ||||||||    ||||||| ||| ||||||||| |||     
T  1777343 cttaccactcatccaacgcaacatcctcatctttgctatacttacttgattttcatgttgactcttaacctttcaacactccgtatcatacaacaacgtc 1777442  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | ||| ||| ||||| ||| || |||||||| ||||| |||||||||||||||||  | ||||||||||| ||||||||||||||||||||    
T  1777443 ggtctgactgctgtccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacacctgaggctcttctccatttcaacca 1777534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 208
Target Start/End: Original strand, 23906633 - 23906820
Alignment:
Q  21 ccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgttagcc 120  Q
    |||||| |||||| ||||| ||||||||| | ||| ||| ||||||| || |||||  |||||||| || ||||||  ||||||||||||| ||   | |    
T  23906633 ccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacacttcgtaccatacaacaacgccggtc 23906732  T
Q  121 tgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | ||| ||||| ||| || |||||||| ||||| |||||||||||||||||  | ||||||||||| ||||||||||||||||||||    
T  23906733 ggactgctgtccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacacctgaggctcttctccatttcaacca 23906820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 33227163 - 33226972
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||| | ||||| ||||||||| | ||| ||| | ||||| || |||||  |||||||| || ||||||| ||||||||||||| ||      
T  33227163 cttaccactcatccagcgcaacatcctcatctctgctacacttacatgattctcatgttgactcttaaccgcccaacactccgtaccatacaacaacgcc 33227064  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | | | ||| ||||| ||| || |||||||| ||||| ||||||||||||||||| || |||||||||||  |||||||||||||||||||    
T  33227063 ggtcggactgctgtccgatagaactttcctttcaacttaagtggtactttcttatcgtacaaaacacctgagactcttctccatttcaacca 33226972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 48174421 - 48174612
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||||| ||||| ||||||||  | ||  ||| |||||||||| |||||  ||||||||  | ||||||| ||||||||||||| ||      
T  48174421 cttaccactcatccaacgcaacatcctcatctttgctatacttacttgattttcatgttgactcttaaccgtccaacactccgtaccatacaacaacgcc 48174520  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | ||| ||| ||||| ||| || |||||||| ||||| ||||||||||||||||   | ||||||||||| ||||||||||||||||||||    
T  48174521 ggtctgactgctgtccgatagaactttcctttcaacttaagtggtactttcttattgcacaaaacacctgaggctcttctccatttcaacca 48174612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 56375244 - 56375053
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||||| ||||| ||||||||| | ||| |||| |||||| || |||||  |||||||| || ||||||| ||||||||||| | || |    
T  56375244 cttaccactcatccaacgcaacatcctcatctctgctacacttgtttgattctcatgttgactcttaaccgcccaacactccgtaccatacaataacgct 56375145  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | ||| ||| ||||| ||| |  |||||||| || || |||||||||||||||||  | ||||||||||| ||||||||| ||||||||||    
T  56375144 ggtctgactgctgtccgatagatctttcctttcaaattaagtggtactttcttatcgcacaaaacacctgaggctcttctcaatttcaacca 56375053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 35690258 - 35690061
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    ||||| |||| |||||| ||||| ||||||||| | ||| ||| ||||||| || |||||||||||||||||  |||| ||  || |||||||||||||     
T  35690258 cttactactcatccaacgcaacatcctcatctcggctacacttacttgattctcatgttggttcttaaccacacaacattccatatcatacaacatcgtc 35690159  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaaccatccaact 215  Q
     | ||  ||||||||  ||| ||||||||| | ||||| |  || |||||||||||| |||||||||| | | ||||||||||||||||||| ||||||    
T  35690158 ggtctaactgttgtctgatagaattttcctctcaacttaaacggcactttcttatcacataaaacacccgca-ctcttctccatttcaaccacccaact 35690061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 212
Target Start/End: Complemental strand, 39708401 - 39708216
Alignment:
Q  28 tccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgttagcctgtctgt 127  Q
    |||||| ||||| |||||||| |  ||| ||| ||||||| ||||||||  |||||||| || ||||||| |||||||||||||| ||    | | ||||    
T  39708401 tccaacgcaacatcctcatctgcactacacttacttgattctcgtgttgcctcttaaccgcccaacactccgtaccatacaacattgtcgatcggactgt 39708302  T
Q  128 tgtccaatataattttccttttaacttgagtggtactttcttatcatataaaa-cacctgaagctcttctccatttcaaccatcca 212  Q
    || || ||| || |||||||| ||||| |||||||||||||||||| | |||| ||||| | |||||| |||||||||||||||||    
T  39708301 tgcccgatagaactttcctttcaacttaagtggtactttcttatcacaaaaaaccacctaaggctcttatccatttcaaccatcca 39708216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 21 - 205
Target Start/End: Complemental strand, 43433868 - 43433684
Alignment:
Q  21 ccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgttagcc 120  Q
    |||||| |||||| ||||| ||||||||| | ||| ||| ||||||| || |||||  |||||||| || ||||||| ||||||||||||| ||   | |    
T  43433868 ccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaacaacgccggtc 43433769  T
Q  121 tgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaa 205  Q
    ||  || ||||| ||| || |||||||| ||||| ||||  |||||||||||  | ||||||||||| |||||||||||||||||    
T  43433768 tgattgctgtccgatagaactttcctttcaacttaagtgacactttcttatcgcacaaaacacctgaggctcttctccatttcaa 43433684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 7092534 - 7092644
Alignment:
Q  4 tatcccttttagccttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtacc 103  Q
    |||||||| ||| |||||||||| |||| ||||||| ||||||||| | ||| ||| |||| || |||||||||||||||||  ||||| |||| |||||    
T  7092534 tatcccttctagacttaccactcatccagcacaacatcctcatctctgctacacttacttgcttctcgtgttggttcttaactgcctaaaactccgtacc 7092633  T
Q  104 atacaacatcg 114  Q
    |||||||||||    
T  7092634 atacaacatcg 7092644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 35 - 208
Target Start/End: Original strand, 46583170 - 46583343
Alignment:
Q  35 caacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgttagcctgtctgttgtccaa 134  Q
    ||||| ||||||||| | ||| ||| ||||||| || |||||  |||||||| || ||||||| ||||||||||||| ||     ||| ||| |||||||    
T  46583170 caacatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaacagcgccgatctgactgctgtccaa 46583269  T
Q  135 tataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
    || || |||||||| || || |||| ||||||||||||  | |||| |||||| ||||||||||||||||||||    
T  46583270 tagaactttcctttcaaattaagtgatactttcttatcgcacaaaatacctgaggctcttctccatttcaacca 46583343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 1793430 - 1793319
Alignment:
Q  1 tcttatcccttttagccttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgt 100  Q
    ||||||||| || || ||||||  || |||||||||||| ||||||||||| ||| ||| ||||||| | ||||||| |||||||| || ||||||||||    
T  1793430 tcttatcccgttaagtcttaccgttcatccaacacaacatcctcatctccgctacacttacttgattctagtgttggctcttaaccgccaaacactctgt 1793331  T
Q  101 accatacaacat 112  Q
    | ||||||||||    
T  1793330 atcatacaacat 1793319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 16002881 - 16002691
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||| ||||||| | || ||| |  ||| ||| ||||||| ||||||||  |||||||| || ||||||  || | ||||||||||| |    
T  16002881 cttaccactcatccagcacaacatcatcgtcttcactacacttacttgattctcgtgttgactcttaacctcccaacacttcgttc-atacaacatcgct 16002783  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | ||  ||| ||||  ||| || ||| |||| ||||| |||||||||||||||||| | ||||||||||| ||||||||| ||||||||||    
T  16002782 ggtctaactgatgtctgataaaacttttctttgaacttaagtggtactttcttatcacacaaaacacctgaggctcttctcaatttcaacca 16002691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 50286925 - 50286734
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||||| ||||  ||||||||| | ||| ||| ||||||| || |||||  |||||||| || ||||||| ||| ||||||||| |||     
T  50286925 cttaccactcatccaacgcaacttcctcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtatcatacaacaacgtc 50286826  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
       ||| | ||||||| ||| || |||||||| ||||| | |||||||||||||||  | ||||||| ||   ||||||| |||||||||||    
T  50286825 gatctgacggttgtccgatagaactttcctttcaacttaaatggtactttcttatcgcacaaaacacatgtgactcttcttcatttcaacca 50286734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 53707748 - 53707557
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    ||||| |||| |||||| ||||| ||||||||| | ||| ||| ||||||| || |||||  |||||||| || |||||||| ||||||||| || ||      
T  53707748 cttactactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactctctaccatacatcaacgcc 53707649  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | | |  || || || ||| || |||||||| ||||| |||||||||||||||||  | |||||| ||||  |||||||||||||||||||    
T  53707648 ggtcggaatgctggccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacatctgagtctcttctccatttcaacca 53707557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 55578985 - 55578797
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||  | |||||||||| |||||| |  | ||| |||  |||||| |||||||||||||||||| || ||||||   ||||||||||||| |||    
T  55578985 cttaccacttattcaacacaacatcctcatatatgctacacttaattgattctcgtgttggttcttaaccgcccaacacttcataccatacaacattgtt 55578886  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | ||| ||||||||| ||| ||||||||||  ||||| || |  |   | |||||| |||||||| |||||| |||||||||||| |||||    
T  55578885 ggtctgactgttgtccgatagaattttccttccaacttaagcgaca---tgttatcacataaaacatctgaagatcttctccattttaacca 55578797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 208
Target Start/End: Original strand, 48622966 - 48623046
Alignment:
Q  128 tgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
    ||||| ||| || |||||||| ||||| |||||||||||||||||  | ||||||||||| ||| ||||||||||||||||    
T  48622966 tgtccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacacctgaggcttttctccatttcaacca 48623046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 54914638 - 54914707
Alignment:
Q  138 aattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
    ||||||||||| ||||| ||||||| |||||||||| ||||||||||  ||||| ||||||||||||||||    
T  54914638 aattttcctttcaacttaagtggtattttcttatcacataaaacacc-aaagcttttctccatttcaacca 54914707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 31458982 - 31458885
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcg 114  Q
    ||||||||||  ||||| ||||| ||||||||  | ||| ||| ||| |||||||||||||||||||||  || ||||||| |||||||| |||||||    
T  31458982 cttaccactcaaccaacgcaacatcctcatctgtgctacacttactttattttcgtgttggttcttaactgcccaacactccgtaccataaaacatcg 31458885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 185
Target Start/End: Original strand, 41009689 - 41009846
Alignment:
Q  28 tccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgttagcctgtctgt 127  Q
    |||||| ||||| |||||| |||| ||| ||| ||||||| || |||||| |||||| | || ||||||| |||| ||||||||||| | | |||  |||    
T  41009689 tccaacgcaacatcctcatttccgctacacttacttgattctcatgttggctcttaatcgcccaacactccgtactatacaacatcgctggtctgattgt 41009788  T
Q  128 tgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacct 185  Q
    ||||||||| || |||  |   ||||| ||||||| |||||||||||| ||| |||||    
T  41009789 tgtccaatagaacttttttcccaacttaagtggtattttcttatcatacaaatcacct 41009846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 47265530 - 47265721
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||| | ||||| ||||||||  | ||| | | ||||||| ||||||||  ||||||||  | || ||| ||||||||||||||||| |    
T  47265530 cttaccactcatccagcgcaacatcctcatctttgctacacctacttgattctcgtgttgactcttaaccgtccaatactttgtaccatacaacatcgct 47265629  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtgg---tactttcttatcatataaaacacctgaagctcttctccatttcaa 205  Q
     | ||| ||||||||  ||| || |||| ||| ||||| |||||   ||||||||||||  | ||||||||| | |||||||| ||||||||    
T  47265630 ggtctgactgttgtcagatagaactttcatttcaacttaagtggtactactttcttatcgcacaaaacacctaaggctcttcttcatttcaa 47265721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 208
Target Start/End: Original strand, 10775761 - 10775941
Alignment:
Q  28 tccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgttagcctgtctgt 127  Q
    |||||||||||| | ||||||| | |||||||  || ||||| |  || |||||| ||| || |||||||| | |||||||||||| || | ||  | ||    
T  10775761 tccaacacaacatcatcatctctgctacgcttaatttatttttgcattagttctttaccgcccaacactctttcccatacaacatcattggtcttaccgt 10775860  T
Q  128 tgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
    ||||||||| |||||||| || |||||||| ||| |||||  |||| ||||||||  | | || || ||||||||||||||    
T  10775861 tgtccaataaaattttcccttcaacttgaggggtgctttcgcatcacataaaacaagtaaggcactcctccatttcaacca 10775941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 3273232 - 3273178
Alignment:
Q  161 tactttcttatcatataaaacacctgaagctcttctccatttcaaccatccaact 215  Q
    ||||||| ||||| ||||||||  ||| |||| ||||||||||||||||||||||    
T  3273232 tactttcgtatcacataaaacaaatgaggctcatctccatttcaaccatccaact 3273178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 17666518 - 17666564
Alignment:
Q  169 tatcatataaaacacctgaagctcttctccatttcaaccatccaact 215  Q
    ||||| ||||||||| ||| |||||||||||||||||| ||||||||    
T  17666518 tatcacataaaacacatgatgctcttctccatttcaacaatccaact 17666564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 8917710 - 8917755
Alignment:
Q  71 gtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||||||||| ||||||||| ||| ||||| |||||||||    
T  8917710 gtgttggttcttaaccgcctaacactatgttccataaaacatcgtt 8917755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 27847 - 27650
Alignment:
Q  18 ttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtta 117  Q
    ||||||||| || ||  ||||| |||||||||||||| |||| ||| ||| || ||||||||||||||| || ||||||| |||||||||||||||||      
T  27847 ttaccactcatctaatgcaacatcctcatctccgttatgcttacttaattctcatgttggttcttaaccgcccaacactccgtaccatacaacatcgtct 27748  T
Q  118 gcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaaccatccaact 215  Q
    | | | || |||||  ||| ||||||||||| ||||| ||||||||||||||||||  ||||||||  ||  |||||||| ||||| |||| ||||||    
T  27747 gtccgactattgtcagatagaattttcctttcaacttaagtggtactttcttatcacgtaaaacactcgagactcttctctatttccaccacccaact 27650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 28977186 - 28977376
Alignment:
Q  18 ttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtta 117  Q
    ||||||||| ||||||||||||  |||||||| | ||| ||| ||||||| || |||||  |||||||| || ||||||| ||||||||||||| |||      
T  28977186 ttaccactcatccaacacaacatactcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaacaacgtcg 28977285  T
Q  118 gcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
      | | ||| ||||| ||| || |||||||| ||||| |||||||||||||||||  | |||||||| || ||||||||||||||||||||    
T  28977286 ttcggactgatgtccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacacccgaggctcttctccatttcaacca 28977376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 34272976 - 34272778
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||||  ||||| ||||||||| | ||| ||| ||||||| || | |||  |||||||| || ||||||| ||||||||||||| |||     
T  34272976 cttaccactcatccaatgcaacatcctcatctctgctacacttacttgattctcatattgactcttaaccgcccaacactccgtaccatacaacaacgtc 34272877  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaaccatccaact 215  Q
     ||| | ||| ||||| ||  || |||||||| ||||| |||||||||||||||||  | ||||||||||| |||||||||||||| ||||| ||||||    
T  34272876 ggccggactgctgtccgattgaactttcctttcaacttaagtggtactttcttatcgcacaaaacacctgaggctcttctccattttaaccacccaact 34272778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 36200752 - 36200538
Alignment:
Q  1 tcttatcccttttagccttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgt 100  Q
    ||||||||  ||||| |||||| ||| |||||| ||||| ||||||||| | ||||||| ||||||| ||  |||||||||||||| |||| |||| |||    
T  36200752 tcttatcctatttagtcttaccgctcatccaacgcaacatcctcatctctgatacgcttacttgattctcacgttggttcttaaccgcctaccactttgt 36200653  T
Q  101 accatacaacatcgttagcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccat 200  Q
    | |||||||||| |  ||  || |||||||||  || ||||||||||| ||||| |   | | |||||||||| ||||||||| |||  |||||||||||    
T  36200652 atcatacaacattgccagtttgactgttgtccggtagaattttcctttcaacttaaacagcattttcttatcacataaaacacatgagtctcttctccat 36200553  T
Q  201 ttcaaccatccaact 215  Q
    |||||||| ||||||    
T  36200552 ttcaaccacccaact 36200538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 1275219 - 1275028
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||||| ||||| ||||||||| | || |||| ||||||| || |||||  || ||||| || ||||||| ||||||||||||| ||      
T  1275219 cttaccactcatccaacgcaacatcctcatctctgctatgcttacttgattctcatgttgactcgtaaccgcccaacactccgtaccatacaacaacgcc 1275120  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | ||| ||| ||||| ||| || |||||||| ||||| |||||||||||||||||  | ||||||||| | |||||||| |||||||||||    
T  1275119 ggtctgactgctgtccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacaccttaggctcttcttcatttcaacca 1275028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 10639251 - 10639060
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||||| ||||| ||||||||| | ||| ||| ||||||| || |||||  |||| ||| || ||||||| ||||||||||||| |||     
T  10639251 cttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttgactcttcaccgcccaacactccgtaccatacaacaacgtc 10639152  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | | | ||| ||| | ||| || |||||||| ||||| |||||||||||||||||  | ||||||||| | ||||||||||||||||||||    
T  10639151 ggtcggactgctgttcgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacacctaaggctcttctccatttcaacca 10639060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 1287917 - 1288115
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||||| ||||| ||||||||| | ||| ||| ||||||| || |||||  |||||||| || ||||||| ||||||||||||| ||      
T  1287917 cttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaacaacgcc 1288016  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaaccatccaact 215  Q
       | | ||| ||| | ||| || |||||||| ||||| | |||||||||||||||  | ||||||| ||| |||||||||||||||||||||||||||    
T  1288017 gatcggactgctgttcgatagaactttcctttcaacttaaatggtactttcttatcgcacaaaacacatgaggctcttctccatttcaaccatccaact 1288115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 12492715 - 12492906
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| ||||||  |||| ||||||||| | ||| ||| ||||||| || |||||  |||||||| || ||||||| |||||||||||||  |      
T  12492715 cttaccactcatccaacgtaacatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtaccatacaacaaagcc 12492814  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | | | ||| ||||| ||| || |||||||| ||||| ||||||||||||||||   | ||||||||||| ||||||||||||||||||||    
T  12492815 ggtcggactgctgtccgatagaactttcctttcaacttaagtggtactttcttattgcacaaaacacctgaggctcttctccatttcaacca 12492906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 2075802 - 2076000
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    ||||| |||| |||||| ||||| ||||||||| | ||| ||| ||| ||| || |||||  |||||||| || ||||||| ||||||||||||| ||      
T  2075802 cttacaactcatccaacgcaacatcctcatctctgctacacttacttaattctcatgttgactcttaaccgcccaacactccgtaccatacaacaacgcc 2075901  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaaccatccaact 215  Q
     | | | ||| ||||| ||| || |||||||| ||||| ||||||||||||||||   | ||||||||||| |||||||| ||||||||||| ||||||    
T  2075902 ggtcggactgctgtccgatagaactttcctttcaacttaagtggtactttcttattgcacaaaacacctgaggctcttcttcatttcaaccacccaact 2076000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 171
Target Start/End: Original strand, 16347706 - 16347860
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||||| ||||| ||||||||||| ||| ||| ||| | | ||||||||| |||||||| |  ||||||| ||||||||||| |||||     
T  16347706 cttaccactcatccaacgcaacatcctcatctccgctacacttacttaactctcgtgttggctcttaaccgctcaacactccgtaccatacaatatcgtc 16347805  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttat 171  Q
     | |||  |||||||| ||| || |||||||| ||||| ||||||| ||||||||    
T  16347806 ggtctgagtgttgtccgatagaactttcctttcaacttaagtggtaatttcttat 16347860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 67 - 208
Target Start/End: Complemental strand, 3301753 - 3301612
Alignment:
Q  67 tttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgttagcctgtctgttgtccaatataattttccttttaacttgagtggtacttt 166  Q
    ||||||||||| |||||||| || ||||||  |||||||||||||| || || ||| ||  ||||| ||| || |||||||| || || |||||||||||    
T  3301753 tttcgtgttggctcttaaccgcccaacacttcgtaccatacaacattgtcagtctgactactgtccgatagaactttcctttcaatttaagtggtacttt 3301654  T
Q  167 cttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
    ||||||  | ||||||||||| |||| |||| ||||||||||    
T  3301653 cttatcgcacaaaacacctgaggctcatctctatttcaacca 3301612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 20318941 - 20318754
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||||| ||||| ||||||||| | ||| ||| ||||||| || |||||  |||||||| |  ||||||| ||||||||||||| ||      
T  20318941 cttaccactcatccaacgcaacatcctcatctctgctacacttacttgattctcatgttgactcttaaccgcgcaacactccgtaccatacaacaacgcc 20318842  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | | | ||| | ||| |||||| |||||||| ||||| |||||||    ||||||  | ||||||||||| ||||||||||||||||||||    
T  20318841 ggtcggactgctatccgatataactttcctttcaacttaagtggta----cttatcgcacaaaacacctgaggctcttctccatttcaacca 20318754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 24178354 - 24178280
Alignment:
Q  141 tttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaaccatccaact 215  Q
    |||||||| ||||| |||||||||||||||||  | ||||||| ||| |||||||||||||||||||| ||||||    
T  24178354 tttcctttcaacttaagtggtactttcttatcgcacaaaacacttgaggctcttctccatttcaaccacccaact 24178280  T

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Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 20077297 - 20077342
Alignment:
Q  169 tatcatataaaacacctgaagctcttctccatttcaaccatccaac 214  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||    
T  20077297 tatcacataaaacacctgaggctcttctccatttcaaccatccaac 20077342  T

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Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 208
Target Start/End: Complemental strand, 16779508 - 16779445
Alignment:
Q  145 cttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
    |||| ||||||| |||||||||| ||||| |||||||| ||||  |||||||||||||||||||    
T  16779508 ctttcaacttgaatggtactttcgtatcacataaaacatctgagtctcttctccatttcaacca 16779445  T

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Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 32516512 - 32516345
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||| | |||||||||||| | ||||||||||||||  | ||| ||| |  || |||||||||||| || |||| ||  | ||||||||||||       
T  32516512 cttaccacacatccaacacaacatcatcatctccgttacgtgtactttattctaatgatggttcttaaccgccaaacattccattccatacaacatcacc 32516413  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacc 184  Q
     |  ||||   |||||||||||||||||| || |||| ||| ||||||||| ||||| ||||||||||    
T  32516412 ggtatgtcaactgtccaatataattttcccttcaactagagcggtactttcgtatcacataaaacacc 32516345  T

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Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 208
Target Start/End: Complemental strand, 3394538 - 3394473
Alignment:
Q  143 tccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
    |||||| | ||| |||||||||||||||||  | ||||||||||| |||| |||||||||||||||    
T  3394538 tcctttcagcttaagtggtactttcttatcgcacaaaacacctgaggctcatctccatttcaacca 3394473  T

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Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 208
Target Start/End: Original strand, 17340844 - 17340991
Alignment:
Q  61 cttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgttagcctgtctgttgtccaatataattttccttttaacttgagtgg 160  Q
    ||||||| ||||||| ||| ||||||||| |||||| |||| |||| ||||| ||  | ||| || |||||| ||| ||||||| ||| ||||| || ||    
T  17340844 cttgattctcgtgttagttattaaccacccaacactttgtatcatataacattgtcggtctgactattgtccgatacaattttcttttcaacttaagcgg 17340943  T
Q  161 tactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
    || | |||||  | |||| |||| ||| |  |||||||||||||||||    
T  17340944 tattctcttacaacataagacacttgatgtccttctccatttcaacca 17340991  T

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Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 207
Target Start/End: Complemental strand, 16772049 - 16771987
Alignment:
Q  145 cttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacc 207  Q
    |||| ||||||  |||||||||| ||| ||||||||||  |||| ||||||||||||||||||    
T  16772049 ctttcaacttggatggtactttcgtattatataaaacatttgaatctcttctccatttcaacc 16771987  T

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Target: scaffold0018 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 31422 - 31231
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgtt 116  Q
    |||||||||| |||||| ||||| ||| ||||| | ||| ||| ||||||| || |||||  ||||||||||| ||||||| ||||| ||||||| ||      
T  31422 cttaccactcatccaacgcaacatcctaatctctgctacacttacttgattctcatgttgactcttaaccacccaacactccgtaccgtacaacaccgcc 31323  T
Q  117 agcctgtctgttgtccaatataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
     | ||| ||| ||| | ||| || |||||||| ||||| |||||||||||||||||  | ||||||| ||| ||||||||||||||||||||    
T  31322 ggtctgactgctgttcgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacacttgaggctcttctccatttcaacca 31231  T

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Target: scaffold0024 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 35 - 208
Target Start/End: Complemental strand, 82657 - 82484
Alignment:
Q  35 caacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtaccatacaacatcgttagcctgtctgttgtccaa 134  Q
    ||||| ||||||||||| | | ||| ||||||| || |||||| |||||||| || ||||||| ||||||||||| |||||  | ||| ||||||||| |    
T  82657 caacatcctcatctccgctgcacttacttgattctcatgttggctcttaaccgcccaacactccgtaccatacaagatcgtcggtctgactgttgtccga 82558  T
Q  135 tataattttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaacca 208  Q
    || || |||||||| ||||| ||  |||||||||||||  | ||||||| ||| ||||||  ||||| ||||||    
T  82557 tagaactttcctttcaacttaaggagtactttcttatcgcacaaaacacatgaggctctttcccattgcaacca 82484  T

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Target: scaffold1493 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold1493
Description:

Target: scaffold1493; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 37 - 101
Alignment:
Q  141 tttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaa 205  Q
    |||||||| ||||| | |||||||||||||||  | ||||||||||| |||||||||||||||||    
T  37 tttcctttcaacttaattggtactttcttatcgcacaaaacacctgaggctcttctccatttcaa 101  T

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Target: scaffold0113 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 206
Target Start/End: Original strand, 12050 - 12115
Alignment:
Q  141 tttccttttaacttgagtggtactttcttatcatataaaacacctgaagctcttctccatttcaac 206  Q
    |||||||||||||| || ||||||||||||||  | ||||||| ||| | ||||||||||||||||    
T  12050 tttccttttaacttaagaggtactttcttatcgcacaaaacacttgaggttcttctccatttcaac 12115  T

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Target: scaffold0157 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 25773 - 25859
Alignment:
Q  17 cttaccactcgtccaacacaacaccctcatctccgttacgcttgcttgattttcgtgttggttcttaaccacctaacactctgtacc 103  Q
    |||||||||| |||||||||||| ||| ||||| | ||| ||| ||||||| || |||||  |||||||| || ||||||| |||||    
T  25773 cttaccactcatccaacacaacatcctaatctctgctacacttacttgattctcatgttgactcttaaccgcccaacactccgtacc 25859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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