View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7758_low_14 (Length: 223)

Name: NF7758_low_14
Description: NF7758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7758_low_14
NF7758_low_14
[»] chr4 (1 HSPs)
chr4 (17-209)||(53939383-53939575)
[»] scaffold0031 (2 HSPs)
scaffold0031 (69-138)||(99703-99773)
scaffold0031 (69-138)||(99919-99989)
[»] chr5 (1 HSPs)
chr5 (69-112)||(41959515-41959558)
[»] chr1 (1 HSPs)
chr1 (69-130)||(32365144-32365206)
[»] chr3 (2 HSPs)
chr3 (69-110)||(40415315-40415356)
chr3 (69-110)||(52931591-52931632)
[»] chr2 (1 HSPs)
chr2 (27-103)||(3853907-3853984)
[»] chr8 (1 HSPs)
chr8 (27-102)||(22552767-22552843)


Alignment Details
Target: chr4 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 53939575 - 53939383
Alignment:
Q  17 aaaatgacccaacaacatgaattgataaaaatcaaatatacattaatgatcaaaacataaattaatttactctcaactcacttttaactaaaattattat 116  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53939575 aaaaagaccaaacaacatgaattgataaaaatcaaatatacattaatgatcaaaacataaattaatttactctcaactcacttttaactaaaattattat 53939476  T
Q  117 cttaaaatcaattttattaattcaatctttaccatcatacaaccaaacacgcactatatttgatttctccttcacaccatactctttcttctt 209  Q
    ||||||||||||||||| |||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  53939475 cttaaaatcaattttatcaattcaatctttaccaccagacaaccaaacacgcaccatatttgatttctccttcacaccatactctttcttctt 53939383  T

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Target: scaffold0031 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 99703 - 99773
Alignment:
Q  69 aaacataaattaatttactctcaactcacttttaactaaaat-tattatcttaaaatcaattttattaatt 138  Q
    ||||||||||||||||||  ||||||||||||||| ||||||  ||||| ||||||||||||| |||||||    
T  99703 aaacataaattaatttacattcaactcacttttaattaaaatcaattatgttaaaatcaatttcattaatt 99773  T

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Target: scaffold0031; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 99919 - 99989
Alignment:
Q  69 aaacataaattaatttactctcaactcacttttaactaaaat-tattatcttaaaatcaattttattaatt 138  Q
    ||||||||||||||||||  ||||||||||||||| ||||||  ||||| ||||||||||||| |||||||    
T  99919 aaacataaattaatttacattcaactcacttttaattaaaatcaattatgttaaaatcaatttcattaatt 99989  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 112
Target Start/End: Original strand, 41959515 - 41959558
Alignment:
Q  69 aaacataaattaatttactctcaactcacttttaactaaaatta 112  Q
    ||||||||||||||| ||| | ||||||||||||||||||||||    
T  41959515 aaacataaattaattcacttttaactcacttttaactaaaatta 41959558  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 32365144 - 32365206
Alignment:
Q  69 aaacataaattaatttactctcaactcacttttaactaaaat-tattatcttaaaatcaattt 130  Q
    |||||||||| |||||||  ||||||||||||| ||||||||  ||||| |||||||||||||    
T  32365144 aaacataaatcaatttacattcaactcacttttgactaaaatcaattattttaaaatcaattt 32365206  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 40415356 - 40415315
Alignment:
Q  69 aaacataaattaatttactctcaactcacttttaactaaaat 110  Q
    ||||||||||||||||||   |||||||||||||||||||||    
T  40415356 aaacataaattaatttacatccaactcacttttaactaaaat 40415315  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 52931632 - 52931591
Alignment:
Q  69 aaacataaattaatttactctcaactcacttttaactaaaat 110  Q
    |||||||||| ||||||| || ||||||||||||||||||||    
T  52931632 aaacataaatcaatttacactaaactcacttttaactaaaat 52931591  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 3853907 - 3853984
Alignment:
Q  27 aacaacatgaattgataaaaatcaaatatacattaatg-atcaaaacataaattaatttactctcaactcacttttaa 103  Q
    ||||||||  |||||||| |||||| | ||||| |||| ||| |||||||||| |||||||  |||||||||||||||    
T  3853907 aacaacatagattgataagaatcaattttacatgaatgtatccaaacataaatcaatttacattcaactcacttttaa 3853984  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 102
Target Start/End: Complemental strand, 22552843 - 22552767
Alignment:
Q  27 aacaacatgaattgataaaaatcaaatatacattaatg-atcaaaacataaattaatttactctcaactcactttta 102  Q
    |||||||||||||||||| |||||  | |||| ||||| ||| |||||||||| ||||| |  ||||||||||||||    
T  22552843 aacaacatgaattgataataatcacttttacaataatgcatccaaacataaatcaattttccatcaactcactttta 22552767  T

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