View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7758_low_2 (Length: 878)
Name: NF7758_low_2
Description: NF7758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7758_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 390; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 258 - 756
Target Start/End: Complemental strand, 25744362 - 25743864
Alignment:
| Q |
258 |
tgtatggtagggatgatgataaagaggccttaatgaaattgctattttccgacgctgtagaaggtgaatgcaatataagtgtgattcccatagtgggcat |
357 |
Q |
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| T |
25744362 |
tgtatggtagggatgatgataaagaggccttaatgaaattgctattttcggacgatccagaaggagaatgcaatataagtgtgattcccatagtgggcat |
25744263 |
T |
|
| Q |
358 |
nnnnnnnattggaaaaaccaccttggctcaatttgtttataatgatgaaaaagtgcagaaggaatttgatctcaaagcttggatttatgtgtctgagcag |
457 |
Q |
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| T |
25744262 |
gggggggattggaaaaaccatcttagctcaatttgtttacaacgatgaaagagtgcagaaggaatttgatctcaaagcttggatttatgtgtctgagcag |
25744163 |
T |
|
| Q |
458 |
tttgatgttctcaagattacaaaaacccttgtggaagatatcacttcatgtagttgcagtattgaagagctgaatttactctagcatgatttgaagaaaa |
557 |
Q |
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|||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||| |
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| T |
25744162 |
tttgatattttcaagattacaaaaacccttgtggaagagatcacttcatgtagttgcagtattgaaaagttgaatttactccagcatgatttgaagaaaa |
25744063 |
T |
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| Q |
558 |
ggttgttaaagaaaaactttttattcattttagatgatgtatggaatcaaaactgcataagccgggaaactttgaagaatccatttgtgtatggtgctcc |
657 |
Q |
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| T |
25744062 |
ggttgttaaagaaaaagtttttattcattttagatgatgtatggaatcaaaactacataagctgggaaactttgaagaatccatttgtgtatggtgctcc |
25743963 |
T |
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| Q |
658 |
tggaagtaagattattgtaacaacaagaattgctcatgtggcatcaattatgcagactgttgagcctaattatctttcagaactgtgtgatgatgattg |
756 |
Q |
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| T |
25743962 |
tggaagtaagattattgtaacaacaagaattgctcacgtggcatcaattatgcagactgttgagccttattatctttcagaactttgtgatgatgattg |
25743864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 752 - 865
Target Start/End: Complemental strand, 25743762 - 25743649
Alignment:
| Q |
752 |
gattgccatcggctgtgaagacacttgcaggacttctgagatctaaagatgatacaagggaatggtacaaagtactaaacagtgagatatgggatttgca |
851 |
Q |
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| T |
25743762 |
gattgcctttggccgtgaagacacttgcgggacttctgagatgtaaagatgatacaagggaatggtacaaagtactaaacagtgagatatgggatttgca |
25743663 |
T |
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| Q |
852 |
ggatgatgagagta |
865 |
Q |
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| T |
25743662 |
gaatgatgagagta |
25743649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 25744466 - 25744423
Alignment:
| Q |
162 |
caagacataattgaaagactagacttgatcataaaacagaaaaa |
205 |
Q |
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| T |
25744466 |
caagacataattgaaagactagacttgatcataaaacagaaaaa |
25744423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 241
Target Start/End: Complemental strand, 25744396 - 25744359
Alignment:
| Q |
204 |
aagtaaaaattccaacaaagataccaacttcatctgta |
241 |
Q |
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| T |
25744396 |
aagtaaaaatcccaacaaagataccaacttcatctgta |
25744359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 6e-18; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 365 - 444
Target Start/End: Original strand, 18085156 - 18085235
Alignment:
| Q |
365 |
attggaaaaaccaccttggctcaatttgtttataatgatgaaaaagtgcagaaggaatttgatctcaaagcttggattta |
444 |
Q |
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| T |
18085156 |
attggaaaaaccaccttagctcaactagtgtataatgatgatagagtacagaaggagtttgatctcaaagcttggattta |
18085235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 752 - 846
Target Start/End: Original strand, 18085658 - 18085752
Alignment:
| Q |
752 |
gattgccatcggctgtgaagacacttgcaggacttctgagatctaaagatgatacaagggaatggtacaaagtactaaacagtgagatatgggat |
846 |
Q |
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| T |
18085658 |
gattgcctttggctttgaagacacttgcaggacttttgagatcaaaaagtgatattcaagaatggcataaagtactgaacagtgagatatgggat |
18085752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 221 - 282
Target Start/End: Original strand, 18085015 - 18085076
Alignment:
| Q |
221 |
aagataccaacttcatctgtagtgggatcaagtgatgtgtatggtagggatgatgataaaga |
282 |
Q |
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| T |
18085015 |
aagacaccaacctcatctgtagttgaagcatgtgatgtgtatggaagggataatgataaaga |
18085076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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