View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7758_low_3 (Length: 587)

Name: NF7758_low_3
Description: NF7758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7758_low_3
NF7758_low_3
[»] chr2 (8 HSPs)
chr2 (37-587)||(2690763-2691313)
chr2 (33-587)||(2698495-2699053)
chr2 (45-172)||(2662488-2662615)
chr2 (39-154)||(2717100-2717215)
chr2 (38-148)||(2712575-2712685)
chr2 (39-148)||(2707330-2707439)
chr2 (39-154)||(2723722-2723837)
chr2 (39-154)||(2745552-2745667)
[»] chr4 (4 HSPs)
chr4 (33-587)||(14519914-14520469)
chr4 (39-222)||(36290462-36290645)
chr4 (324-531)||(36290155-36290362)
chr4 (45-121)||(31697128-31697204)
[»] chr3 (7 HSPs)
chr3 (39-112)||(1077349-1077422)
chr3 (39-108)||(1107584-1107653)
chr3 (39-112)||(1050446-1050519)
chr3 (39-112)||(1091189-1091262)
chr3 (39-127)||(3080427-3080515)
chr3 (39-127)||(3094864-3094952)
chr3 (39-127)||(4548016-4548104)
[»] chr8 (1 HSPs)
chr8 (45-172)||(21180250-21180377)
[»] chr1 (4 HSPs)
chr1 (39-115)||(6497785-6497861)
chr1 (51-115)||(47698386-47698450)
chr1 (57-114)||(47678863-47678920)
chr1 (44-112)||(47711622-47711690)
[»] chr7 (1 HSPs)
chr7 (45-148)||(20005403-20005506)
[»] chr6 (2 HSPs)
chr6 (45-115)||(20233243-20233313)
chr6 (45-115)||(22127227-22127297)
[»] chr5 (1 HSPs)
chr5 (39-112)||(470068-470141)


Alignment Details
Target: chr2 (Bit Score: 507; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 37 - 587
Target Start/End: Original strand, 2690763 - 2691313
Alignment:
Q  37 gggccaagccaaagtcagatatttttggattcatgttttcatctaacaaaatgttacttggttttagatctcgatgaattattctgagtcttgaatcgcg 136  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||    
T  2690763 gggccaagcaaaagtcagatatttttggattcatgttttcatctaacaaaatgttacttggttttagatttcgatgaattattctaagtcttgaatcacg 2690862  T
Q  137 atgcagataaagtagtcctcttgcaatgccttcaatgatttcataacgtcttgcccagtctaattgtgtttgcttgataggatctgtgtgatgtaagcca 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2690863 atgcagataaagtagtcctcttgcaatgccttcaatgatttcataacgtcttgcccagtctaattgtgtttgcttgataggatctgtgtgatgtaagcca 2690962  T
Q  237 caaaattcaaattagttttaaaaagtacatatatctcttttcatactcatgataaaaatgcataaagaaaataggctggattaatgtgaagaaacacacc 336  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2690963 caaaattcaaattagtttaaaaaagtacatatatctcttttcatactcatgataaaaatgcataaagaaaataggctggattaatgtgaagaaacacacc 2691062  T
Q  337 aaataaaaagtgatccaagcttttgttccgcatgaattcgtatacaagcaacttttcatctccttcaatagaacatcccattagtttaaccagatttcta 436  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2691063 aaataaaaagtgatccaagcttttgttcggcatgaattcgtatacaagcaacttttcatctccttcaatagaacatcccattagtttaaccagatttcta 2691162  T
Q  437 tgttccagttttgcaaacaacctcatttcattcttgaactcgtctaaaccatggctggaccgtctagaaagtctcttgactgctatttcttctccggtcg 536  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  2691163 tgttccagttttgcaaacaacctcatttcattctggaactcatctaaaccatggccggaccgtctagaaagcctcttgactgctatttcttctccggtcg 2691262  T
Q  537 gaagcttctcctgataaatggaacaactaattttaattagatcattttatt 587  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2691263 gaagcttcccctgataaatggaacaactaattttaattagatcattttatt 2691313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 33 - 587
Target Start/End: Original strand, 2698495 - 2699053
Alignment:
Q  33 atccgggccaagccaaagtcagatatttttggattcatgttttcatctaacaaaatgttacttggttttagatctcgatgaattattctgagtcttgaat 132  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2698495 atccgggccaagccaaagtcagatatttttggattcatgttttcatctaacaaaatgttacttgcttttagatctcgatgaattattctgagtcttgaat 2698594  T
Q  133 cgcgatgcagataaagtagtcctcttgcaatgccttcaatgatttcataacgtcttgcccagtctaattgtgtttgcttgataggatctgtgtgatgtaa 232  Q
    | |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2698595 cacgatgcagataaaggagtcctcttgcaattccttcaatgatttcataacgtcttgcccagtctaattgtgttttcttgataggatctgtgtgatgtaa 2698694  T
Q  233 gccacaaaattcaaattagttttaa--aaagtacatat---atctcttttcatactcatgataaaaatgcataaagaaaataggctggattaatgtgaag 327  Q
     ||||||||||||||||||||  ||  ||||||| |||   ||||||||| ||||| |||||||||||||| |||||||||||||  ||||||||  |||    
T  2698695 -ccacaaaattcaaattagttaaaaggaaagtacttatataatctctttttatacttatgataaaaatgcagaaagaaaataggcatgattaatgcaaag 2698793  T
Q  328 aaacacaccaaataaaaagtgatccaagcttttgttccgcatgaattcgtatacaagcaacttttcatctccttcaatagaacatcccattagtttaacc 427  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2698794 aaacacaccaaataaaaagcgatccaagcttttgttcagcatgaattcgtatacaagcaacttttcatctccttcaatagaacatcccataagtttaacc 2698893  T
Q  428 agatttctatgttccagttttgcaaacaacctcatttcattcttgaactcgtctaaaccatggctggaccgtctagaaagtctcttgactgctatttctt 527  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||  |||||||| ||||| || ||||| ||||||||||    
T  2698894 agatttctatgttgcagttgtgcaaacaacctcatttcattcttgaactcgtctaaaccttggccagaccgtctcgaaagccttttgaccgctatttctt 2698993  T
Q  528 ctccggtcggaagcttctcctgataaatggaacaactaattttaattagatcattttatt 587  Q
    |||| | |||||||||  |||||||||  |||||||||| ||| ||||||||||||||||    
T  2698994 ctccagacggaagctttccctgataaacagaacaactaactttcattagatcattttatt 2699053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 172
Target Start/End: Original strand, 2662488 - 2662615
Alignment:
Q  45 ccaaagtcagatatttttggattcatgttttcatctaacaaaatgttacttggttttagatctcgatgaattattctgagtcttgaatcgcgatgcagat 144  Q
    ||||||||||| |||||||||||||| |   ||||||| | ||  || |||| ||||||||||| |||||||||||| ||||||||||| | ||| ||||    
T  2662488 ccaaagtcagaaatttttggattcatttcgccatctaaaagaacattgcttgcttttagatctctatgaattattcttagtcttgaatctctatgaagat 2662587  T
Q  145 aaagtagtcctcttgcaatgccttcaat 172  Q
    | |  ||||| || |||||||| |||||    
T  2662588 agacaagtcccctagcaatgccgtcaat 2662615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 154
Target Start/End: Original strand, 2717100 - 2717215
Alignment:
Q  39 gccaagccaaagtcagatatttttggattcatgttttcatctaacaaaatgttacttggttttagatctcgatgaattattctgagtcttgaatcgcgat 138  Q
    |||| ||||||||| ||||||||||||||||  | | |||| |||||||| ||||| |||||||| |||| ||| |||||||| | ||| ||||| | ||    
T  2717100 gccatgccaaagtcggatatttttggattcagttctccatccaacaaaatattactcggttttaggtctctatggattattcttaatctcgaatctctat 2717199  T
Q  139 gcagataaagtagtcc 154  Q
    | |||||||| |||||    
T  2717200 gaagataaagcagtcc 2717215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 38 - 148
Target Start/End: Original strand, 2712575 - 2712685
Alignment:
Q  38 ggccaagccaaagtcagatatttttggattcatgttttcatctaacaaaatgttacttggttttagatctcgatgaattattctgagtcttgaatcgcga 137  Q
    ||||| ||||||||||||||||||||||||||| | | |||| ||||| || ||||  || || || |||| ||| |||||||| | ||||||||| |||    
T  2712575 ggccatgccaaagtcagatatttttggattcatttctccatccaacaagatattaccgggcttaaggtctctatgtattattcttaatcttgaatctcga 2712674  T
Q  138 tgcagataaag 148  Q
    || ||||||||    
T  2712675 tgaagataaag 2712685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 39 - 148
Target Start/End: Original strand, 2707330 - 2707439
Alignment:
Q  39 gccaagccaaagtcagatatttttggattcatgttttcatctaacaaaatgttacttggttttagatctcgatgaattattctgagtcttgaatcgcgat 138  Q
    |||| |||||| |||||||||||||||||||  | | |||| ||||| || |||||||| ||||| |||| ||| |||||||| | ||||||||| | ||    
T  2707330 gccatgccaaaatcagatatttttggattcaattctccatccaacaagatattacttggctttaggtctctatgtattattcttaatcttgaatctctat 2707429  T
Q  139 gcagataaag 148  Q
    | ||||||||    
T  2707430 gaagataaag 2707439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 39 - 154
Target Start/End: Original strand, 2723722 - 2723837
Alignment:
Q  39 gccaagccaaagtcagatatttttggattcatgttttcatctaacaaaatgttacttggttttagatctcgatgaattattctgagtcttgaatcgcgat 138  Q
    |||| ||||||||| ||||||||||||||||  | | |||| |||||||| ||||| || ||||| |||| ||| |||||||| | ||| ||||| | ||    
T  2723722 gccatgccaaagtcggatatttttggattcagttctccatccaacaaaatattactcggctttaggtctctatgtattattcttaatctcgaatctctat 2723821  T
Q  139 gcagataaagtagtcc 154  Q
    | |||||||| |||||    
T  2723822 gaagataaagcagtcc 2723837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 154
Target Start/End: Original strand, 2745552 - 2745667
Alignment:
Q  39 gccaagccaaagtcagatatttttggattcatgttttcatctaacaaaatgttacttggttttagatctcgatgaattattctgagtcttgaatcgcgat 138  Q
    |||| ||||||||  ||||||||||||||||  | | |||| |||||||| ||||| || ||||| |||| ||| |||||||| | ||| ||||| | ||    
T  2745552 gccatgccaaagttggatatttttggattcagttctccatccaacaaaatattactcggctttaggtctctatgtattattcttaatctcgaatctctat 2745651  T
Q  139 gcagataaagtagtcc 154  Q
    | |||||||| |||||    
T  2745652 gaagataaagcagtcc 2745667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 33 - 587
Target Start/End: Original strand, 14519914 - 14520469
Alignment:
Q  33 atccgggccaagccaaagtcagatatttttggattcatgttttcatctaacaaaatgttacttggttttagatctcgatgaattattctgagtcttgaat 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14519914 atccgggccaagccaaagtcagatatttttggattcatgttttcatctaacaaaatgttacttggttttagatctcgatgaattattctgagtcttgaat 14520013  T
Q  133 cgcgatgcagataaagtagtcctcttgcaatgccttcaatgatttcataacgtcttgcccagtctaattgtgtttgcttgataggatctgtgtgatgtaa 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||| |    
T  14520014 cgcgatgcagataaagtagtcctcttgcaatgccttcaatgatttcataacgtcttgcccagtttaattgtgctttcttgataggatctgtgtgatgtta 14520113  T
Q  233 gccacaaaattcaaattagttttaaaaagtacatata-tctcttttcatactcatgataaaaatgcataaagaaaataggctggattaatgtgaagaaac 331  Q
    || ||||||||||||||||||  || |||||| |||| |||||||||||||| | |||||||||||| ||||||||||||| | ||||||| ||||||||    
T  14520114 gcaacaaaattcaaattagttaaaagaagtacttataatctcttttcatacttacgataaaaatgcagaaagaaaataggcagaattaatgggaagaaac 14520213  T
Q  332 acaccaaataaaaagtgatccaagcttttgttccgcatgaattcgtatacaagcaacttttcatctccttcaatagaacatcccattagtttaaccagat 431  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  14520214 acaccaaataaaaagtaatccaagcttttgttcggcatgaattcgtatacaagcaacttttcatctccttcaatagaacatcccattagtctaaccagat 14520313  T
Q  432 ttctatgttccagttttgcaaacaacctcatttcattcttgaactcgtctaaaccatggctggaccgtctagaaagtctcttgactgctatttcttctcc 531  Q
    |||||||||  || || ||||||| |||||||||||||||||||||||||||||| || | | || |||||||||| |||||||| || |||||||||||    
T  14520314 ttctatgttgaagcttcgcaaacagcctcatttcattcttgaactcgtctaaaccttgtccgaacggtctagaaagcctcttgacagcaatttcttctcc 14520413  T
Q  532 ggtcggaagcttctcctgataaatggaacaactaattttaattagatcattttatt 587  Q
    ||| ||||||||  ||||||||| |||||||| |||||| ||||||||||||||||    
T  14520414 ggttggaagctttccctgataaacggaacaacaaattttcattagatcattttatt 14520469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 39 - 222
Target Start/End: Complemental strand, 36290645 - 36290462
Alignment:
Q  39 gccaagccaaagtcagatatttttggattcatgttttcatctaacaaaatgttacttggttttagatctcgatgaattattctgagtcttgaatcgcgat 138  Q
    |||||||||||||| || |||||||||||||| |||||||| ||||||||||| |||| ||||||||||||||| |||||||| || | |||||| || |    
T  36290645 gccaagccaaagtctgaaatttttggattcatattttcatccaacaaaatgttgcttgcttttagatctcgatggattattctaagacgtgaatctcggt 36290546  T
Q  139 gcagataaagtagtcctcttgcaatgccttcaatgatttcataacgtcttgcccagtctaattgtgtttgcttgataggatctg 222  Q
    |||||||||||||||||||||||||||| || ||||||||||| |||||||  | ||||| || ||||| |||||  |||||||    
T  36290545 gcagataaagtagtcctcttgcaatgccctcgatgatttcataccgtcttgagctgtctagttttgttttcttgactggatctg 36290462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 324 - 531
Target Start/End: Complemental strand, 36290362 - 36290155
Alignment:
Q  324 gaagaaacacaccaaataaaaagtgatccaagcttttgttccgcatgaattcgtatacaagcaacttttcatctccttcaatagaacatcccattagttt 423  Q
    ||||||||| ||||||||| ||||  ||||| ||||||||  ||||| |||| |||||||| |||||||| || |||| ||| |||||||||| |||| |    
T  36290362 gaagaaacataccaaataagaagtagtccaaacttttgtttggcatgtattcatatacaagtaacttttcttccccttgaattgaacatcccaatagtct 36290263  T
Q  424 aaccagatttctatgttccagttttgcaaacaacctcatttcattcttgaactcgtctaaaccatggctggaccgtctagaaagtctcttgactgctatt 523  Q
    ||| |||||||||||||  | ||| || |  | | |||||||||||||||||||||||||||| ||| | |||  ||||||||| |||||||| || |||    
T  36290262 aacaagatttctatgttgtaatttagctattagcatcatttcattcttgaactcgtctaaaccttggttcgacaatctagaaagcctcttgaccgcgatt 36290163  T
Q  524 tcttctcc 531  Q
    | ||||||    
T  36290162 tgttctcc 36290155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 45 - 121
Target Start/End: Complemental strand, 31697204 - 31697128
Alignment:
Q  45 ccaaagtcagatatttttggattcatgttttcatctaacaaaatgttacttggttttagatctcgatgaattattct 121  Q
    ||||| || ||||||||||||||||  || ||||| ||||| | |||||||| ||| ||||||| |||||| |||||    
T  31697204 ccaaaatctgatatttttggattcaacttgtcatccaacaatacgttacttgctttgagatctctatgaataattct 31697128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 1077422 - 1077349
Alignment:
Q  39 gccaagccaaagtcagatatttttggattcatgttttcatctaacaaaatgttacttggttttagatctcgatg 112  Q
    ||||||||||| || ||||||||||||||||| |  |  ||||| ||||| |||||||||||||||||||||||    
T  1077422 gccaagccaaaatctgatatttttggattcatatcattgtctaataaaatattacttggttttagatctcgatg 1077349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 39 - 108
Target Start/End: Complemental strand, 1107653 - 1107584
Alignment:
Q  39 gccaagccaaagtcagatatttttggattcatgttttcatctaacaaaatgttacttggttttagatctc 108  Q
    ||||||||||| || |||||||| || ||||| |  | ||||| ||||||||||||||||||||||||||    
T  1107653 gccaagccaaaatctgatattttcgggttcatatcattatctagcaaaatgttacttggttttagatctc 1107584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 1050519 - 1050446
Alignment:
Q  39 gccaagccaaagtcagatatttttggattcatgttttcatctaacaaaatgttacttggttttagatctcgatg 112  Q
    ||||||||||| || |||||||| | |||||| |  |  ||||| ||||| |||||||||||||||||||||||    
T  1050519 gccaagccaaaatctgatattttggcattcatatcattgtctaataaaatattacttggttttagatctcgatg 1050446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 1091262 - 1091189
Alignment:
Q  39 gccaagccaaagtcagatatttttggattcatgttttcatctaacaaaatgttacttggttttagatctcgatg 112  Q
    ||||||||||| || |||||||| | |||||| |  |  ||||| ||||| |||||||||||||||||||||||    
T  1091262 gccaagccaaaatctgatattttggcattcatatcattgtctaataaaatattacttggttttagatctcgatg 1091189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 39 - 127
Target Start/End: Complemental strand, 3080515 - 3080427
Alignment:
Q  39 gccaagccaaagtcagatatttttggattcatgttttcatctaacaaaatgttacttggttttagatctcgatgaattattctgagtct 127  Q
    ||||| ||||| |||||||||||||||||||| | || |||||| | ||  ||||||| |||||| |||| ||| |||| ||| |||||    
T  3080515 gccaatccaaaatcagatatttttggattcatctcttgatctaatagaacattacttgcttttaggtctctatggattactctaagtct 3080427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 39 - 127
Target Start/End: Complemental strand, 3094952 - 3094864
Alignment:
Q  39 gccaagccaaagtcagatatttttggattcatgttttcatctaacaaaatgttacttggttttagatctcgatgaattattctgagtct 127  Q
    ||||| ||||| |||||||||||||||||||| | || |||||| | ||  ||||||| |||||| |||| ||| |||| ||| |||||    
T  3094952 gccaatccaaaatcagatatttttggattcatctcttgatctaagagaacattacttgcttttaggtctctatggattactcttagtct 3094864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 39 - 127
Target Start/End: Original strand, 4548016 - 4548104
Alignment:
Q  39 gccaagccaaagtcagatatttttggattcatgttttcatctaacaaaatgttacttggttttagatctcgatgaattattctgagtct 127  Q
    ||||| ||||| |||||||||||||||||||| | || |||||| | ||  ||||||| |||||| |||| ||| |||| ||| |||||    
T  4548016 gccaatccaaaatcagatatttttggattcatctcttgatctaaaagaacattacttgcttttaggtctctatggattactctaagtct 4548104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 45 - 172
Target Start/End: Original strand, 21180250 - 21180377
Alignment:
Q  45 ccaaagtcagatatttttggattcatgttttcatctaacaaaatgttacttggttttagatctcgatgaattattctgagtcttgaatcgcgatgcagat 144  Q
    |||||||| |||||||| |||||||||||  | |||||||| ||||| || | ||||| |||||| ||||| |||| || ||| ||||   |||||||||    
T  21180250 ccaaagtctgatattttaggattcatgttggcgtctaacaatatgttgctagcttttaaatctcggtgaatgattcggaatctggaatattgatgcagat 21180349  T
Q  145 aaagtagtcctcttgcaatgccttcaat 172  Q
    |||| ||||||  |||||| || |||||    
T  21180350 aaaggagtccttgtgcaatcccgtcaat 21180377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 115
Target Start/End: Original strand, 6497785 - 6497861
Alignment:
Q  39 gccaagccaaagtcagatatttttggattcatgttttcatctaacaaaatgttacttggttttagatctcgatgaat 115  Q
    |||| |||||| |||||||| || |||||||| | ||||||||| | ||||||||||| ||| ||||| ||||||||    
T  6497785 gccatgccaaaatcagatatcttaggattcatttcttcatctaagagaatgttacttgctttgagatcacgatgaat 6497861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 47698450 - 47698386
Alignment:
Q  51 tcagatatttttggattcatgttttcatctaacaaaatgttacttggttttagatctcgatgaat 115  Q
    ||||||||||| ||||||||||| ||||||||||| |  ||||| ||||| ||||| ||||||||    
T  47698450 tcagatattttaggattcatgttatcatctaacaatacattactaggtttgagatcacgatgaat 47698386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 47678920 - 47678863
Alignment:
Q  57 atttttggattcatgttttcatctaacaaaatgttacttggttttagatctcgatgaa 114  Q
    |||||||| ||||| | |||||||| |||||||||||||| ||| ||||| |||||||    
T  47678920 atttttgggttcatctcttcatctagcaaaatgttacttgttttgagatcacgatgaa 47678863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 47711622 - 47711690
Alignment:
Q  44 gccaaagtcagatatttttggattcatgttttcatctaacaaaatgttacttggttttagatctcgatg 112  Q
    ||||||||| |||||||| |||||||  |||||||| || | ||||||||||| ||| ||||| |||||    
T  47711622 gccaaagtctgatattttaggattcaacttttcatccaagagaatgttacttgctttaagatcacgatg 47711690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 148
Target Start/End: Original strand, 20005403 - 20005506
Alignment:
Q  45 ccaaagtcagatatttttggattcatgttttcatctaacaaaatgttacttggttttagatctcgatgaattattctgagtcttgaatcgcgatgcagat 144  Q
    ||||||||||||||||||||||||| ||| || |||| ||| || ||||||| ||| | ||||| ||| || ||| | || || ||||| | ||||||||    
T  20005403 ccaaagtcagatatttttggattcaggttctcgtctagcaagatattacttgctttcatatctctatgtatgatttttagcctggaatctctatgcagat 20005502  T
Q  145 aaag 148  Q
    ||||    
T  20005503 aaag 20005506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 115
Target Start/End: Complemental strand, 20233313 - 20233243
Alignment:
Q  45 ccaaagtcagatatttttggattcatgttttcatctaacaaaatgttacttggttttagatctcgatgaat 115  Q
    ||||| || |||||||||||| ||||||| |||||||| ||||| ||||| ||||| || || ||||||||    
T  20233313 ccaaaatctgatatttttggaatcatgttctcatctaataaaatattactaggtttgaggtcacgatgaat 20233243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 115
Target Start/End: Complemental strand, 22127297 - 22127227
Alignment:
Q  45 ccaaagtcagatatttttggattcatgttttcatctaacaaaatgttacttggttttagatctcgatgaat 115  Q
    ||||| || |||||||||||| ||||||| |||||||| ||||| ||||| ||||| || || ||||||||    
T  22127297 ccaaaatctgatatttttggaatcatgttctcatctaataaaatattactaggtttgaggtcacgatgaat 22127227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 470068 - 470141
Alignment:
Q  39 gccaagccaaagtcagatatttttggattcatgttttcatctaacaaaatgttacttggttttagatctcgatg 112  Q
    ||||| ||||| || ||||||||||||||||| || ||||||||||| |  || || ||||| |||||||||||    
T  470068 gccaaaccaaaatctgatatttttggattcattttgtcatctaacaatacattgctaggtttgagatctcgatg 470141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University