View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7758_low_4 (Length: 522)
Name: NF7758_low_4
Description: NF7758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7758_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 18 - 511
Target Start/End: Original strand, 34640651 - 34641144
Alignment:
| Q |
18 |
ttgtgaaccgcaatttagtgtatgtttgatatcacaatgaatatgtcagaatcacgatgattcgccgtgattttgaagaacctacaaaatgtacctttaa |
117 |
Q |
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| T |
34640651 |
ttgtgaaccgcaatttagtgtatgtttgatatcacaacgaatatgtcagaatcacgatgattcgccgtgattttgaagaacctacaaaatgtacctttaa |
34640750 |
T |
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| Q |
118 |
aaaatcacggtgtgttaccgtgattcttccatgtctaccgtgataccaaacatatgtttaaatcatgaacacaccctgcaggaagaaagaaagttgagag |
217 |
Q |
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| T |
34640751 |
aaaatcacggtgtgttaccgtgattctttcatgtctaccgtgataccaaacatatgtttaaattatgaacacacactgcaggaagaaagaaagttgagag |
34640850 |
T |
|
| Q |
218 |
tcacggagatagtacaccgagagttggtgtgagtgggtcaaaaccagaaccagcagaggcaaaactaactcctgtcataagctcttcatcactaagattt |
317 |
Q |
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|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34640851 |
tcacagagatagtactccgagagttggtgtgagtgggtcaaaaccagaaccagcagaggcaaaactaactcctgtcataagctcttcatcactaagattt |
34640950 |
T |
|
| Q |
318 |
ggatccaaatatggtggcaccaactctttcaggcctaaatatgaagctgtacaatccaaatatatgtatagaacatcaatcaaacaaggtctatactaag |
417 |
Q |
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| T |
34640951 |
ggatccaaatatggtggcaccaactctttcaggcctaaatatgaagctgtacaatccaaatatatgtatagaacatcaatcaaacaaggtctatactaag |
34641050 |
T |
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| Q |
418 |
agaaatcaatttctacattctcttaagttactatgtccatggcatgtcacctcagcggtaagtgtttgaccttataacctagtacaaaattcat |
511 |
Q |
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| T |
34641051 |
agaaatcaatttctacattctcttaagttactatgtccatggcatgtcacctcaacggtaagtgtttgaccttataacctagtacaaaattcat |
34641144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 242 - 305
Target Start/End: Complemental strand, 4440190 - 4440127
Alignment:
| Q |
242 |
tggtgtgagtgggtcaaaaccagaaccagcagaggcaaaactaactcctgtcataagctcttca |
305 |
Q |
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| T |
4440190 |
tggtgtaagagggtcaaaaccagaaccagcagaggcaaaactaactcctgtcataagctcttca |
4440127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 37 - 110
Target Start/End: Original strand, 45266491 - 45266564
Alignment:
| Q |
37 |
gtatgtttgatatcacaatgaatatgtcagaatcacgatgattcgccgtgattttgaagaacctacaaaatgta |
110 |
Q |
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| T |
45266491 |
gtatgtttggtatcacaatgagtatgttagaattacgttgatccgccgtaattttgtagaagctgcaaaatgta |
45266564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 34197912 - 34197857
Alignment:
| Q |
36 |
tgtatgtttgatatcacaatgaatatgtcagaatcacgatgattcgccgtgatttt |
91 |
Q |
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| T |
34197912 |
tgtatgtttgatatcacggtggatatgtcagaatcacgatggatcaccgtgatttt |
34197857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 110
Target Start/End: Original strand, 5276939 - 5277015
Alignment:
| Q |
34 |
agtgtatgtttgatatcacaatgaatatgtcagaatcacgatgattcgccgtgattttgaagaacctacaaaatgta |
110 |
Q |
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| T |
5276939 |
agtgtttgtttggtatcacagtggatatgtcagaatcacggtgatccatcatgattttgtagaaactacaaagtgta |
5277015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 177
Target Start/End: Complemental strand, 35993548 - 35993484
Alignment:
| Q |
113 |
tttaaaaaatcacggtgtgttaccgtgattcttccatgtctaccgtgataccaaacatatgttta |
177 |
Q |
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| T |
35993548 |
tttaaaaaatcacggtgagtctccgtgattctgtcatatccgccgtgataccaaacatatattta |
35993484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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