View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7758_low_9 (Length: 305)
Name: NF7758_low_9
Description: NF7758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7758_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 292
Target Start/End: Original strand, 33005685 - 33005958
Alignment:
| Q |
19 |
cgaataggtgtgcaacctggaatttcaataggttcaacatgatccatgtactcacccgaaatttgttcatcaagtattggcaaatgcaagtgtagtgaag |
118 |
Q |
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| T |
33005685 |
cgaataggtgtgcaacccggaatttcaataggttcaacgtgatccatgtactcacccgaaacttgttcgtcaagtattggcaaatgcaagtgtagtgaag |
33005784 |
T |
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| Q |
119 |
ttgtcatggcagaaacagggaagtacatgaaagataagatgttgaactctttcgctatttctaatgcttggtttgcaaaaggatcaacaactattgctac |
218 |
Q |
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| T |
33005785 |
ttgtcatggcagaaacagggaagtacatgaaagataagatgttgaactctttcgctatttctaatgcttggtttgcaaaaggatcaacaactattgctac |
33005884 |
T |
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| Q |
219 |
aaccggtgtggttgaaattgaacaaagcaaactcaacgattcgcgaaaagatggcatggatttagtaacaccaa |
292 |
Q |
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| T |
33005885 |
aaccggtgtggttgaagttgaacaaagcaaactcaacgattcgcgaaaagatggcatggatttagtaacaccaa |
33005958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 31 - 280
Target Start/End: Complemental strand, 3718898 - 3718646
Alignment:
| Q |
31 |
caacctggaatttcaataggttcaacatgatccatgtactcacccgaaatttgttcatcaagtattggcaaatgcaagtgtagtgaagttgtcatggcag |
130 |
Q |
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| T |
3718898 |
caacctggaatctgaataggatcaatgtgatctttgtattcacatgaaacttgttcatgcagtgtcggaaaatacaagttgaatgaagttatcatggcag |
3718799 |
T |
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| Q |
131 |
aaacagggaagtacatgaaagataagatgttgaactctttcgctatttctaatgcttggtttgcaaaaggatcaacaactattgctacaaccggtgtg-- |
228 |
Q |
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| T |
3718798 |
aaagtgggaagtatataaaagataagaggttcaagtctttagctatttctaatgcttgacttgcaaaaggatcaacaaccaatgctgacactggtgtgca |
3718699 |
T |
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| Q |
229 |
-gttgaaattgaacaaagcaaactcaacgattcgcgaaaagatggcatggatt |
280 |
Q |
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| T |
3718698 |
tgttgaaattgaacaaagtaacctcaacaagttccgaagacatggcatggatt |
3718646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 106 - 280
Target Start/End: Complemental strand, 3707314 - 3707137
Alignment:
| Q |
106 |
aagtgtagtgaagttgtcatggcagaaacagggaagtacatgaaagataagatgttgaactctttcgctatttctaatgcttggtttgcaaaaggatcaa |
205 |
Q |
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| T |
3707314 |
aagtgtaatgaagttatcatggcagaaagtgggaaatatacaaaagataagaggttcaagtctttagctatttctaatgcttgacttgcaaaaggatcaa |
3707215 |
T |
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| Q |
206 |
caactattgctacaaccggtgtg---gttgaaattgaacaaagcaaactcaacgattcgcgaaaagatggcatggatt |
280 |
Q |
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| T |
3707214 |
caaccaatgctgacactggtgtgcatgttgaagttgaacacagtaacctcaacgagttgcgaagagatggcatggatt |
3707137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 65 - 209
Target Start/End: Original strand, 3778501 - 3778645
Alignment:
| Q |
65 |
tgtactcacccgaaatttgttcatcaagtattggcaaatgcaagtgtagtgaagttgtcatggcagaaacagggaagtacatgaaagataagatgttgaa |
164 |
Q |
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| T |
3778501 |
tgtattcacctgaaacttgttcatgaagtgtcggtaaatgcaaaaagagtgaagttcccatggcagaaagtgggaagtatacgaaagataagaggtttaa |
3778600 |
T |
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| Q |
165 |
ctctttcgctatttctaatgcttggtttgcaaaaggatcaacaac |
209 |
Q |
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| T |
3778601 |
gtcttttgctatttctaatgcatgacttgcaaaaggatcaacaac |
3778645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 114 - 218
Target Start/End: Original strand, 3770889 - 3770993
Alignment:
| Q |
114 |
tgaagttgtcatggcagaaacagggaagtacatgaaagataagatgttgaactctttcgctatttctaatgcttggtttgcaaaaggatcaacaactatt |
213 |
Q |
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| T |
3770889 |
tgaagttgtcatggcagaaagtggaaagtatacaaaagataagatgttctagtcttttgctatttctaatgcttgacttgcataaggatcaacaaccaat |
3770988 |
T |
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| Q |
214 |
gctac |
218 |
Q |
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| T |
3770989 |
gctac |
3770993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 123 - 194
Target Start/End: Complemental strand, 3700619 - 3700548
Alignment:
| Q |
123 |
catggcagaaacagggaagtacatgaaagataagatgttgaactctttcgctatttctaatgcttggtttgc |
194 |
Q |
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| T |
3700619 |
catggcagaaagtggaaagtatatgaaagataagaggttgaactcttttgctatttctaatgcttgggttgc |
3700548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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