View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7759_high_5 (Length: 263)

Name: NF7759_high_5
Description: NF7759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7759_high_5
NF7759_high_5
[»] chr2 (1 HSPs)
chr2 (9-247)||(16148584-16148822)
[»] chr4 (1 HSPs)
chr4 (9-247)||(36757964-36758202)
[»] chr3 (1 HSPs)
chr3 (9-247)||(40109107-40109345)
[»] chr5 (2 HSPs)
chr5 (9-247)||(19082800-19083038)
chr5 (9-136)||(6531787-6531914)
[»] chr1 (2 HSPs)
chr1 (9-247)||(23303239-23303477)
chr1 (39-123)||(15014917-15015001)
[»] scaffold0477 (1 HSPs)
scaffold0477 (34-247)||(2209-2422)
[»] chr6 (1 HSPs)
chr6 (34-247)||(4651192-4651405)


Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 9 - 247
Target Start/End: Complemental strand, 16148822 - 16148584
Alignment:
Q  9 gaagaatatcatgtagaatttactttgaaatattacaaggagcaacattcacaaaagcataaagtcttatgggatggtgatgtggttggttgtagttgca 108  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16148822 gaagaaaatcatgtagaatttactgtgaaatattacaaggagcaacattcacaaaagcataaagtcttatgggatggtgatgtggttggttgtagttgca 16148723  T
Q  109 agcactttgagttttggggtattctttgtcgtcatgtattgacaatattccttcataaagattgttttgagattccaacaagttactagccattacgttg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  16148722 agcactttgagttttggggtattctttgtcgtcatgtattgacaatattccttcataaagattgttttgagattccaacaagttacttgccattacgttg 16148623  T
Q  209 gtgtcgtgatgaatttcaaagaccggttgaagtaaatat 247  Q
    |||||||||||||||||||||||||||||||||||||||    
T  16148622 gtgtcgtgatgaatttcaaagaccggttgaagtaaatat 16148584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 9 - 247
Target Start/End: Complemental strand, 36758202 - 36757964
Alignment:
Q  9 gaagaatatcatgtagaatttactttgaaatattacaaggagcaacattcacaaaagcataaagtcttatgggatggtgatgtggttggttgtagttgca 108  Q
    |||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36758202 gaagaaaatcatgtagaatttactgtgaaatattgcaaggagcaacattcacaaaagcataaagtcttatgggatggtgatgtggttggttgtagttgca 36758103  T
Q  109 agcactttgagttttggggtattctttgtcgtcatgtattgacaatattccttcataaagattgttttgagattccaacaagttactagccattacgttg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  36758102 agcactttgagttttggggtattctttgtcgtcatgtattgacaatattccttcataaagattgttttgagattccaacaagttacttgccattacgttg 36758003  T
Q  209 gtgtcgtgatgaatttcaaagaccggttgaagtaaatat 247  Q
    |||||||||||||||||||||||||||||||||||||||    
T  36758002 gtgtcgtgatgaatttcaaagaccggttgaagtaaatat 36757964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 9 - 247
Target Start/End: Complemental strand, 40109345 - 40109107
Alignment:
Q  9 gaagaatatcatgtagaatttactttgaaatattacaaggagcaacattcacaaaagcataaagtcttatgggatggtgatgtggttggttgtagttgca 108  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40109345 gaagaaaatcatgtagaatttactgtgaaatattacaaggagcaacattcacaaaagcataaagtcttatgggatggtgatgtggttggttgtagctgca 40109246  T
Q  109 agcactttgagttttggggtattctttgtcgtcatgtattgacaatattccttcataaagattgttttgagattccaacaagttactagccattacgttg 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  40109245 agcactttgagttttggggtattctttgtcgtcatgtattgacaatattctttcataaagattgttttgagattccaacaagttacttgccattacgttg 40109146  T
Q  209 gtgtcgtgatgaatttcaaagaccggttgaagtaaatat 247  Q
    |||||||||||||||||||||||||||||||||||||||    
T  40109145 gtgtcgtgatgaatttcaaagaccggttgaagtaaatat 40109107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 247
Target Start/End: Complemental strand, 19083038 - 19082800
Alignment:
Q  9 gaagaatatcatgtagaatttactttgaaatattacaaggagcaacattcacaaaagcataaagtcttatgggatggtgatgtggttggttgtagttgca 108  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||    
T  19083038 gaagaaaatcatgtagaatttactgtgaaatattacaaggagcaacattcacaaaagcataaagtcttatgtgatggtgatgttgttagttgtagttgca 19082939  T
Q  109 agcactttgagttttggggtattctttgtcgtcatgtattgacaatattccttcataaagattgttttgagattccaacaagttactagccattacgttg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  19082938 agcactttgagttttggggtattctttgtcgtcatgtattgacaatattccttcataaagattgttttgagattccaacaagttacttgccattacgttg 19082839  T
Q  209 gtgtcgtgatgaatttcaaagaccggttgaagtaaatat 247  Q
    |||||||||||||||||||||||||||||||||||||||    
T  19082838 gtgtcgtgatgaatttcaaagaccggttgaagtaaatat 19082800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 9 - 136
Target Start/End: Original strand, 6531787 - 6531914
Alignment:
Q  9 gaagaatatcatgtagaatttactttgaaatattacaaggagcaacattcacaaaagcataaagtcttatgggatggtgatgtggttggttgtagttgca 108  Q
    |||||| | ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||      
T  6531787 gaagaaaagcatgtagaatttattgtgaaatattacaaggagcaacattcacaaaagcataaagtcttatgggattgtgatgttgttggttgtagttgtg 6531886  T
Q  109 agcactttgagttttggggtattctttg 136  Q
    |||| |||||||||||||||||||||||    
T  6531887 agcattttgagttttggggtattctttg 6531914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 9 - 247
Target Start/End: Original strand, 23303239 - 23303477
Alignment:
Q  9 gaagaatatcatgtagaatttactttgaaatattacaaggagcaacattcacaaaagcataaagtcttatgggatggtgatgtggttggttgtagttgca 108  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||| ||||||| ||||    
T  23303239 gaagaaaatcatgtagaatttactgtgaaatattacaaggagcaacattcacaaaagcataaagtctaatgagatggtgatgtagttagttgtagatgca 23303338  T
Q  109 agcactttgagttttggggtattctttgtcgtcatgtattgacaatattccttcataaagattgttttgagattccaacaagttactagccattacgttg 208  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  23303339 agcactttgagttttggggtattctttgtcatcatgtattgacaatattcattcataaagattgttttgagattccaacaagttacttgccattacgttg 23303438  T
Q  209 gtgtcgtgatgaatttcaaagaccggttgaagtaaatat 247  Q
    |||||||||||||||||||||||||||||||||||||||    
T  23303439 gtgtcgtgatgaatttcaaagaccggttgaagtaaatat 23303477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 15014917 - 15015001
Alignment:
Q  39 tattacaaggagcaacattcacaaaagcataaagtcttatgggatggtgatgtggttggttgtagttgcaagcactttgagtttt 123  Q
    ||||||||| ||||| |||||| |||||| |||||||||||||||||||||| |||||| |||||||  ||||| ||||||||||    
T  15014917 tattacaagaagcaagattcactaaagcacaaagtcttatgggatggtgatgcggttggatgtagttctaagcattttgagtttt 15015001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 34 - 247
Target Start/End: Complemental strand, 2422 - 2209
Alignment:
Q  34 tgaaatattacaaggagcaacattcacaaaagcataaagtcttatgggatggtgatgtggttggttgtagttgcaagcactttgagttttggggtattct 133  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||| |||||||||||||||||| |    
T  2422 tgaaatattacaatgagcaacattcacaaaagcataaagtcttatgggatggtgatgtggttggtttcagttccaagcattttgagttttggggtatttt 2323  T
Q  134 ttgtcgtcatgtattgacaatattccttcataaagattgttttgagattccaacaagttactagccattacgttggtgtcgtgatgaatttcaaagaccg 233  Q
    | || |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||     
T  2322 tcgttgtcatgtattgacaatattccttcataaagattgatttgagattccaataagttacttgccattacgttggtgtcgtgataaatttcaaagacca 2223  T
Q  234 gttgaagtaaatat 247  Q
    |||||| |||||||    
T  2222 gttgaaataaatat 2209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 34 - 247
Target Start/End: Complemental strand, 4651405 - 4651192
Alignment:
Q  34 tgaaatattacaaggagcaacattcacaaaagcataaagtcttatgggatggtgatgtggttggttgtagttgcaagcactttgagttttggggtattct 133  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||| |||||||||||||||||| |    
T  4651405 tgaaatattacaatgagcaacattcacaaaagcataaagtcttatgggatggtgatgtggttggtttcagttccaagcattttgagttttggggtatttt 4651306  T
Q  134 ttgtcgtcatgtattgacaatattccttcataaagattgttttgagattccaacaagttactagccattacgttggtgtcgtgatgaatttcaaagaccg 233  Q
    | || |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||     
T  4651305 tcgttgtcatgtattgacaatattccttcataaagattgatttgagattccaataagttacttgccattacgttggtgtcgtgataaatttcaaagacca 4651206  T
Q  234 gttgaagtaaatat 247  Q
    |||||| |||||||    
T  4651205 gttgaaataaatat 4651192  T

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