View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7759_low_1 (Length: 541)
Name: NF7759_low_1
Description: NF7759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7759_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 10 - 429
Target Start/End: Complemental strand, 14176180 - 14175761
Alignment:
| Q |
10 |
ggtgttagtagtaataggggaatcttgtctgccagtgatcatttcacatacacattcatatattaatcataattatacataattcgacaatatttaatgg |
109 |
Q |
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| T |
14176180 |
ggtgttagtagtcataggggaatcctgtctgccagtgatcatttcacatacatattcatttattaatcataattatacataactcgacaatatttaatgg |
14176081 |
T |
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| Q |
110 |
tgtgtcacacaatttatctgagttcatttacaccaattactatatcaggtgaagtgttattctaataagagcataataatcaagggaaagggatctaaca |
209 |
Q |
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| T |
14176080 |
tgtgtcacacaatttatctgagttcatttacaccaattactatatcaggtgaagtgttattctaataagagcataataatcaagggaaagggatctaaca |
14175981 |
T |
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| Q |
210 |
ttattatgcacatttaatattctgcaaaacagtgtttgatgaatattaggagtacaagggtacctagcactcctcttatattggtatctaaacctatagt |
309 |
Q |
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| T |
14175980 |
ttattatgcacatttaatattctccaaaacagtgtttgatgaatattaggagtacaagggtacctagcactccttttattttggtatctaaacctatagt |
14175881 |
T |
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| Q |
310 |
tagtaactaatcataaattggccaaacactaaatacatttggtaatgctaaacctaaaggaacccacctcaattttagccgataaacgattatgattcgc |
409 |
Q |
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| T |
14175880 |
taataactaatcataaattggccaaacactaaatacatttggtaatgctaaacctaaaggaacccacctcaattttagccgataaacgattatgattcgc |
14175781 |
T |
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| Q |
410 |
taatcccaatatcaagcttc |
429 |
Q |
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| T |
14175780 |
taatcccaatatcaagcttc |
14175761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 457 - 511
Target Start/End: Complemental strand, 14175768 - 14175714
Alignment:
| Q |
457 |
caagcctcccgcaagctgcaaattcagtccaaccatcaatccaaactcttaccaa |
511 |
Q |
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| T |
14175768 |
caagcttcccgcaagctccaaattcagtccaaccatcaatccaaactcttaccaa |
14175714 |
T |
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