View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7759_low_11 (Length: 225)
Name: NF7759_low_11
Description: NF7759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7759_low_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 30950771 - 30950963
Alignment:
| Q |
16 |
gaagaaattttgagtcggtatagggaaattcgtcctaatattcaacctgcaggttatattatatgtttttgttgattattataatttttggaattcatgt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30950771 |
gaagaaattttgagtcggtatagggaaattcgtcctaatattcaacctgcaggttatattatatgttgttgttgattattataatttttggaattcatgt |
30950870 |
T |
|
| Q |
116 |
tatagagagtgacctaatcatacttatgtttttaa-atcagacactacatcctttggacctatcattgaaatggctacgaaaatcgttgatca |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
30950871 |
tatagagagtgacctaatcatacttatgtttttaacatcaggcactacatcctttgcacctatcattgaaatggctacgaaaatcgttgatca |
30950963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 30958474 - 30958526
Alignment:
| Q |
16 |
gaagaaattttgagtcggtatagggaaattcgtcctaatattcaacctgcagg |
68 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||| || |||||| |
|
|
| T |
30958474 |
gaagaagttttgagtcggtatagggaaattgttcctaatattcgacttgcagg |
30958526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 7473308 - 7473361
Alignment:
| Q |
16 |
gaagaaattttgagtcggtatagggaaattcgtcctaatattcaacctgcaggt |
69 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||| ||| ||||||| |
|
|
| T |
7473308 |
gaagaagttttgagtcggtatagggaaattgttcctaatattaaacttgcaggt |
7473361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University