View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7759_low_2 (Length: 489)
Name: NF7759_low_2
Description: NF7759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7759_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 183 - 472
Target Start/End: Complemental strand, 33126730 - 33126445
Alignment:
| Q |
183 |
gtggttggaccaaacacagcatatcttgtctcatgcgtagaagcacagtacataggagtagccaatgtagcgtctaaatcatgttgtcttcacaacctac |
282 |
Q |
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| T |
33126730 |
gtggttggaccaaacacaacatatcttgtctcatgcgtagaagcacagtacataggagtagccaatgtagcgtctaaatcatgttgtcttcacaacctac |
33126631 |
T |
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| Q |
283 |
tcttagaattatattgtcctatcacaaaagttactctggtcaattgtgacaacatcaacattgtttatctctctgacaattcagttcaacatcgacatca |
382 |
Q |
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| T |
33126630 |
tctttgaattatattgtcctatcacaaaagttactctggtcaattgtgacaacatcaacgttgtttatctctctgacaattcagttcaacatcggcatca |
33126531 |
T |
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| Q |
383 |
accatgcttcttccttccaatcatcacctttccttccttcttactcctatgacacgaccaatatttctatcttggagtgtttcagcagta |
472 |
Q |
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| T |
33126530 |
accatgcttcttccttccaatcatcacctttc----cttcttactcctatgacacggccaatatttcaatcttggagtgtctcagcagta |
33126445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 33126912 - 33126836
Alignment:
| Q |
1 |
ttaatgaataatctctttgatgtcatatatttttaaaaagttgtagtattttttagtttcaattattataagaaggg |
77 |
Q |
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| T |
33126912 |
ttaatgaataatctctttgatgtcatatatttttaaaaagttgtagtattttttagtttcaattattataagaaggg |
33126836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 236 - 453
Target Start/End: Complemental strand, 33126223 - 33125990
Alignment:
| Q |
236 |
aggagtagccaatgtagcgtctaaatcatgttgtcttcacaac-----ctactcttagaattatattgtcctatcacaaaagttactctggtcaattgtg |
330 |
Q |
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| T |
33126223 |
aggagtagttaatgtagtgtctgaatcatgttggcttcacatcacagcctactcttggaactatattgtcctttctaaaaact-actttggtctattaag |
33126125 |
T |
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| Q |
331 |
acaacatcaacattgtttatctctctgacaattcagttcaacatcgacatcaaccatgcttcttc--------cttc----caatcatcacctttccttc |
418 |
Q |
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| T |
33126124 |
acaacatcaacgttgtttatctctcggacaatctcgttcaacatcgacaacaaccatgctttttctctcaaatcttctcttcaatcttcacttttccttc |
33126025 |
T |
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| Q |
419 |
cttcttactcctatgacacgaccaatatttctatc |
453 |
Q |
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| T |
33126024 |
cttccgactcctatgacacgatcaatatttctatc |
33125990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 271 - 337
Target Start/End: Complemental strand, 37526428 - 37526362
Alignment:
| Q |
271 |
ttcacaacctactcttagaattatattgtcctatcacaaaagttactctggtcaattgtgacaacat |
337 |
Q |
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| T |
37526428 |
ttcacaacttactcttggaactatattgtcctatcacaaaagctactttggtatgttgtgacaacat |
37526362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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