View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7759_low_5 (Length: 345)
Name: NF7759_low_5
Description: NF7759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7759_low_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 19 - 345
Target Start/End: Complemental strand, 28545878 - 28545552
Alignment:
| Q |
19 |
aagttttggtctaggtagaattgagctctgactatttgtttttgtagcttcacttcctgaagttgttgttatttgagagggtagtatgaatggagtcaga |
118 |
Q |
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| T |
28545878 |
aagtcttggtctaggtagaattgagctctgactatttgtttttgtagcttcacttcctgaagttgttgttatttgagagggtagtatgaatggagtcaga |
28545779 |
T |
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| Q |
119 |
gtttgaactttgaactgttaggttcagatgtacatggtgttctttcatctccttttctagtttatttttgttaaatatttgtcaaacttatctgaattgg |
218 |
Q |
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| T |
28545778 |
gtttgaactttgaactgttaggttcagatatacatggtgttctttcatctccttttctagtttatttttgttaaatatttgtcaaacttatctgaattgg |
28545679 |
T |
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| Q |
219 |
ttgataatgcttcaagaattctggtcatattaagttcactttatttaattattgtgaaatttgatcatttttaatgatcttcttgaaggtttatcaattg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28545678 |
ttgataatgcttcaagaattctggtcatattaagttcactttatttaattattgtgaaatttgatcatttttattgatcttcttgaaggtttatcaattg |
28545579 |
T |
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| Q |
319 |
actgctgcttttagttcacggttattc |
345 |
Q |
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| T |
28545578 |
actgctgcttttagttcacggttattc |
28545552 |
T |
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