View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7759_low_6 (Length: 314)
Name: NF7759_low_6
Description: NF7759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7759_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 36223567 - 36223267
Alignment:
| Q |
1 |
ttggtttgctattttcatttatag-tatttgaagaaattaatattgcatgtttaaaggagtgactgtagtaggttttaattctttcttagatcaatgatc |
99 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36223567 |
ttggtttgctattttcatttatagatatttgaagaaattaatattgcatgtttaaaggagtgactgtagtaggttttaattctttcttagatcaatgatc |
36223468 |
T |
|
| Q |
100 |
attcaattctttcaattgtttgttccaaaagttatccctgcaaaagttttaacatagaccttagggacaattttgacttgttttaagttcaatcgtctcg |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36223467 |
attcaattctttcaattgtttgttccaaaagttatccctgcaaatgttttaacatagaccttagggacaattttgacttgttttaagttcaatcgtctcg |
36223368 |
T |
|
| Q |
200 |
aggaggatgacgatgcaaaggccgcaattgcaatttcagtctccaaagttactcaggtgactctttaatacttattagattgttgttgtgggaattgatg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36223367 |
aggaggatgacgatgcaaaggccgcaattgcaatttcagtctccaaagttactcaggtgactctttaatacttattagattgttgttgtgggaattgatg |
36223268 |
T |
|
| Q |
300 |
t |
300 |
Q |
| |
|
| |
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|
| T |
36223267 |
t |
36223267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 194 - 288
Target Start/End: Complemental strand, 36227322 - 36227228
Alignment:
| Q |
194 |
gtctcgaggaggatgacgatgcaaaggccgcaattgcaatttcagtctccaaagttactcaggtgactctttaatacttattagattgttgttgt |
288 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||| |
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| T |
36227322 |
gtctcgaggaggatgacgatgcaaaggctgcaattgcaatttcagtctccaaactcactcaggtgactctttagtacttattagattgttgttgt |
36227228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 39426101 - 39425909
Alignment:
| Q |
1 |
ttggtttgctattttcatttatagtatttgaagaaat-taatattgcatgtttaaaggagtgactgtagtaggttttaattctttcttagatcaatgatc |
99 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||| |||||||||| ||||||||||| ||||| |||||||||||||||||| ||||||||||||| |
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| T |
39426101 |
ttggtttgctattttcggttttagtatttgaagaaatctaatattgcaggtttaaaggagctactgttgtaggttttaattctttcgtagatcaatgatc |
39426002 |
T |
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| Q |
100 |
attcaattctttcaattgtttgttccaaaagttatccctgcaa--------aagttttaacatagaccttagggacaattttgacttgtttta |
184 |
Q |
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|||||||| ||||||||||||||| ||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
39426001 |
attcaattgtttcaattgtttgtttgaaaagttatccctgctagcagttttaagttttaacatagatcttagggacaattttgacttgtttta |
39425909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 39426768 - 39426636
Alignment:
| Q |
1 |
ttggtttgctattttcatttatagtatttgaagaaattaatattgcatgtttaaaggagtgactgtagtaggttttaattctttcttagatcaatgatca |
100 |
Q |
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|
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||| ||||||||||| |
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| T |
39426768 |
ttggttttttattttcatttttagtatttgaagaaattaatattgcatgtttaaaggagcgactgccgtaggttttaattc-ttcttaaatcaatgatca |
39426670 |
T |
|
| Q |
101 |
ttcaattctttcaattgtttgttccaaaagttat |
134 |
Q |
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||||||||||||| | |||||||| ||||||||| |
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|
| T |
39426669 |
ttcaattctttcagtagtttgttcgaaaagttat |
39426636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 44 - 139
Target Start/End: Complemental strand, 9300741 - 9300646
Alignment:
| Q |
44 |
tgcatgtttaaaggagtgactgtagtaggttttaattctttcttagatcaatgatcattcaattctttcaattgtttgttccaaaagttatccctg |
139 |
Q |
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|
||||||||||||||| | || | |||||||||||||||||| ||||||||||||||||||||||| |||| ||||||| |||| ||| ||||| |
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|
| T |
9300741 |
tgcatgtttaaaggaattcctattgtaggttttaattctttcacagatcaatgatcattcaattcttctaattatttgttcgaaaaattacccctg |
9300646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 44 - 129
Target Start/End: Complemental strand, 9271549 - 9271464
Alignment:
| Q |
44 |
tgcatgtttaaaggagtgactgtagtaggttttaattctttcttagatcaatgatcattcaattctttcaattgtttgttccaaaa |
129 |
Q |
| |
|
|||| |||||||||| ||||| | ||||||||||||||||| | | ||||||||||||||||||||| |||| ||||||| |||| |
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| T |
9271549 |
tgcacgtttaaaggaatgactattgtaggttttaattctttatcaaatcaatgatcattcaattcttgtaattatttgttcaaaaa |
9271464 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 139
Target Start/End: Complemental strand, 9287393 - 9287323
Alignment:
| Q |
68 |
gtaggttttaattctttcttagatcaatgatcattcaattctttcaattgtttgttccaaaagttatccctg |
139 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||||| |||| ||||||| |||||||| ||||| |
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| T |
9287393 |
gtaggttttaattctt-ctcagatcaatgatcattcaattcttctaattatttgttcgaaaagttacccctg |
9287323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 9300623 - 9300583
Alignment:
| Q |
142 |
aaagttttaacatagaccttagggacaattttgacttgttt |
182 |
Q |
| |
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|||||||||||||| || ||| ||||||||||||||||||| |
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| T |
9300623 |
aaagttttaacataaacattaaggacaattttgacttgttt |
9300583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 259
Target Start/End: Complemental strand, 30547869 - 30547812
Alignment:
| Q |
202 |
gaggatgacgatgcaaaggccgcaattgcaatttcagtctccaaagttactcaggtga |
259 |
Q |
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|
|||||||| ||||| || ||||||||||||||||| || ||| ||||||||||||||| |
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|
| T |
30547869 |
gaggatgatgatgccaaagccgcaattgcaatttccgtatccgaagttactcaggtga |
30547812 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 45241614 - 45241561
Alignment:
| Q |
35 |
aattaatattgcatgtttaaaggagtgactg-tagtaggttttaattctttctt |
87 |
Q |
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|||||||||||||||||||||||| |||||| || |||||||||||||||||| |
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|
| T |
45241614 |
aattaatattgcatgtttaaaggaatgactgttaaaaggttttaattctttctt |
45241561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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