View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7760_high_1 (Length: 536)
Name: NF7760_high_1
Description: NF7760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7760_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 111 - 522
Target Start/End: Original strand, 33691304 - 33691715
Alignment:
| Q |
111 |
atgcacaaagacaaatgttcaacaaacgccattgaaggtttctcaaccgtgcaaagaattaatgtcttaaggcttaaaaataatatgatgaaaatttggg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33691304 |
atgcacaaagacaaatgttcaacaaacgccattgaaggtttctcaaccgtgcaaagaattaatgtcttaaggcttaaaaataatttgatgaaaatttggg |
33691403 |
T |
|
| Q |
211 |
agttataatttgatgcaccaaattctccttcacgcctccaactgcaccaccctccgagtcaaatacgtcacatcatgattaatgtcattttcaagacaat |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33691404 |
agttataatttgatgcaccaaattctccttcacgcctccaactgcaccaccctcctagtcaaatacgtcacatcatgattaatgtcattttcaagacaat |
33691503 |
T |
|
| Q |
311 |
taactatctcgactgctaccttgggtttgtcctgactttttaatctctgaggctttctttcactcaccaatatagtttactatatctagctattttcaac |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33691504 |
taactatctcgactgctaccttgggtttgtcctgactttttaatctctgaggctttctttcactcaccaatatagtttactatatctagctattttcaac |
33691603 |
T |
|
| Q |
411 |
caaccaattacttagattttttcgtttacctgttttgatattcagataaagtaatgtagcatgtgcctatagtttatttacgtgccaacttgacctgcac |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33691604 |
caaccaattacttagattttttcgtttacctgttttgatattcagataaagtaatgtagcatgtgcctatagtttatttacgtgccaacttgacctgcac |
33691703 |
T |
|
| Q |
511 |
atatatacatac |
522 |
Q |
| |
|
|||||||||||| |
|
|
| T |
33691704 |
atatatacatac |
33691715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University