View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7760_high_11 (Length: 243)
Name: NF7760_high_11
Description: NF7760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7760_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 5243743 - 5243947
Alignment:
| Q |
16 |
atgaaagtaagaggggtttttggagttaaaatttgtggctttacactcaaacatctggaaatattttatcaannnnnnnnnatgatggtcggagtttaac |
115 |
Q |
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| T |
5243743 |
atgaaagtaagaggggtttttggagttcaaatttgtggctttacactcaaacatctgaaaactttttatcaatttttttt--tg-tggtcggagtttaac |
5243839 |
T |
|
| Q |
116 |
ctcaaactttatatacattatgcgttgtccttaccaattgaattaaacttactataaccaaccttttatcatttcaactaccattacaagatgaataaac |
215 |
Q |
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|||||| |||||||| ||||||| |||||||||| ||||||| ||||||||| || |||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
5243840 |
ctcaaattttatatatattatgcattgtccttactaattgaactaaacttacgatgaccaaccttttatcatttgaactaccattacaagatgaatcaac |
5243939 |
T |
|
| Q |
216 |
taactttc |
223 |
Q |
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|||||||| |
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| T |
5243940 |
taactttc |
5243947 |
T |
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