View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7760_high_12 (Length: 241)
Name: NF7760_high_12
Description: NF7760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7760_high_12 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 48037600 - 48037823
Alignment:
| Q |
18 |
aatatctatgataatgatcctagaaatggagatagtcctgatgctaaacttaaagacattttaattgaaaaatcgcccattatagaattgaatctcacat |
117 |
Q |
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| T |
48037600 |
aatatctatgataatgatcctagaaatggagatagtcttgatgctaaacttaaagacattttaattgaaaaatcgcccattatagaattgaatctcacat |
48037699 |
T |
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| Q |
118 |
tttccacaaacaaactttctaggcattttttataaccttatttttccataaggtgagtaattgagagactttgaaaagaaaattgttggtttactctcgc |
217 |
Q |
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| T |
48037700 |
tttccactaacaaactttctaggcattttttataaccttatttttccataaggtgagtaattgagagactttgaaaagaaaattgttggtttactctcgc |
48037799 |
T |
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| Q |
218 |
ataaagtttattgtttttgttgtt |
241 |
Q |
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| T |
48037800 |
ataaagtttattgtttttgttgtt |
48037823 |
T |
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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 214
Target Start/End: Original strand, 28096280 - 28096464
Alignment:
| Q |
31 |
atgatcctagaaatggagatagtcctgatgctaaacttaaagacattttaattgaaaaatcgcccattatagaattgaatctcacattttccacaaacaa |
130 |
Q |
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| T |
28096280 |
atgatcttagaaatcggggtattcttgatgctaaaactagggacattttaattgaaaaatgtcatattacaaaattgaatatcacatttcctatagacat |
28096379 |
T |
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| Q |
131 |
actttctaggcattttttataaccttatttttccataaggt-gagtaattgagagactttgaaaagaaaattgttggtttactct |
214 |
Q |
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| T |
28096380 |
actttctagacattttgcatattcttacttttccaaaaagttgagttattgagagacttttgaaagaaaatggttggtttactct |
28096464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 167
Target Start/End: Complemental strand, 29540661 - 29540565
Alignment:
| Q |
71 |
agacattttaattgaaaaatcgcccattatagaattgaatctcacattttccacaaacaaactttctaggcattttttataaccttatttttccata |
167 |
Q |
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| T |
29540661 |
agacattttaattgaaatatgacctattagagaattgaatctcacattttctatagacagactttctaggtatttctcatatgcttatttttccata |
29540565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 24207626 - 24207676
Alignment:
| Q |
69 |
aaagacattttaattgaaaaatcgcccattatagaattgaatctcacattt |
119 |
Q |
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| T |
24207626 |
aaagacattttaattgaaaaagggcctattagggaattgaatctcacattt |
24207676 |
T |
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