View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7760_high_2 (Length: 468)
Name: NF7760_high_2
Description: NF7760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7760_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 13 - 410
Target Start/End: Complemental strand, 48038290 - 48037883
Alignment:
| Q |
13 |
aatatgaaaatattagttgttatattagcattttctctttcattgagattcgatttctagtcttttaactccttcaatatacttcaactattgactcaaa |
112 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
48038290 |
aatatgaaaacattagttgttatattagcattttctctttcattgggattcgatttctagtcttttaactccttcaatatacttcaactattggctcaaa |
48038191 |
T |
|
| Q |
113 |
ttagttgaactatcaactccttcaagaaatacttaatttgagtttcacttaaattgaaagtaagaacttgtttatttattgtgtgttccactgttttcat |
212 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48038190 |
ttagttgaactatcaactcctctaagaaatacttaatttgagtttcacttgaattgaaagtaagaacttgtttatttattgtgtgttccactgttttcat |
48038091 |
T |
|
| Q |
213 |
tttaactaataaat----------ataaatcaaacatttcacacagaaaatagatttaacattttttaaaactcggaaaatttctcatcattattttcat |
302 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48038090 |
tttaactaataaatataagagaatataaatcaaacatttcactcagaaaatagatttaacattttttaaaactcggaaaatttctcatcattattttcat |
48037991 |
T |
|
| Q |
303 |
tgtctatgaaaatacaccatctctatttttgtcttccaatttccctctatcacaagattgccaatacaatattctagtctttgttgtttccatccaagaa |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
48037990 |
tgtctatgaaaatacaccatctctatttttgtcttccaatttccctctatcacaagattgccaatacaatattctagtctatgttgtttccatccaagaa |
48037891 |
T |
|
| Q |
403 |
atcgcaaa |
410 |
Q |
| |
|
|||||||| |
|
|
| T |
48037890 |
atcgcaaa |
48037883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 48046025 - 48045851
Alignment:
| Q |
16 |
atgaaaatattagttgttatatt-agcattttctctttcattgagattcgatttctagtcttttaactccttcaatatacttc-aactattgactcaaat |
113 |
Q |
| |
|
||||||| |||||||||| |||| | ||||||||| || ||||||||| || ||||||||| | ||||| |||||||| |||| || ||| || |||| |
|
|
| T |
48046025 |
atgaaaacattagttgttttatttaccattttctcatttattgagatttgaattctagtctctgaactctttcaatattcttctaattatatgcttaaat |
48045926 |
T |
|
| Q |
114 |
tagttgaactatcaactccttcaagaaatacttaatttgagtttcacttaaattgaaagtaagaacttgtttatt |
188 |
Q |
| |
|
||||| ||||| |||| ||| |||||||| ||||| || | ||||||| || |||||||||||||||||||||| |
|
|
| T |
48045925 |
tagttaaactaccaacacctctaagaaatatttaatatgtgcttcacttgaagtgaaagtaagaacttgtttatt |
48045851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University