View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7760_high_4 (Length: 440)
Name: NF7760_high_4
Description: NF7760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7760_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Original strand, 31853226 - 31853657
Alignment:
| Q |
1 |
tctcatgttcatacacctcagcagaatgttcacaattttgtgttaactgagtaggagagaaaataacatgatttttaaatttctcaggttaatataccaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31853226 |
tctcatgttcatacacctcagcagaatgttcacaattttgtgttaactgagtaggagagaaaataacatgatttttaaatttctcaggttaatataccaa |
31853325 |
T |
|
| Q |
101 |
ttcagcaaagctactttaggtatggctctagtgagggtgacaatactgattctcaggtgtgtgacttccttgaacatannnnnnnnnnnnnnnnn--ggt |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
31853326 |
ttcagcaaagctactttaggtatggctctagtgagggtgacaatactgattctcaggtgtgtgacttccttgaacatatttttttttttaaaaaaaaggt |
31853425 |
T |
|
| Q |
199 |
aaattattttagtgtatgcttcaacggtgtgatttcttctgtaggcatctggtgcatatatattccgcccaagtgaatcctctccaactattgtttcaag |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31853426 |
aaattattttagtgtatgcttcaacggtgtgatttcttctgtaggcatctggtgcatatatattccgcccaagtgaatcctctccaactattgtttcaag |
31853525 |
T |
|
| Q |
299 |
atcagtaagttactatctttaatatgttaaccgatggaattgggtggatagaataagaagtgtgattatataaattctcaaattatcttagattttctat |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31853526 |
atcagtaagttactatctttaatatgttaaccgatggaattgggtggatagaataagaagtgtgattatataaattctcaaattatcttagattttctat |
31853625 |
T |
|
| Q |
399 |
tcatgttctcatacttactcattatgtctctg |
430 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |
|
|
| T |
31853626 |
tcatgttctcatacttactcattatgtgtctg |
31853657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University