View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7760_high_8 (Length: 279)
Name: NF7760_high_8
Description: NF7760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7760_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 272
Target Start/End: Complemental strand, 46582583 - 46582330
Alignment:
| Q |
19 |
ctgagaagattgttcttcttgtctagtttcttgctgagtattgataggtgttgcaggaagtgaagtggtgctagtttcatttaccctcataggtattgaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
46582583 |
ctgagaagattgttcttcttgtctagtttcttgctgagtattgataggtgttgcaggaagtgaagtggtgctagtttcatttactctcataggtattgaa |
46582484 |
T |
|
| Q |
119 |
tggttaattctgccatcaatacaagtagaacattttttctctgcccagctttctatatcatattggccatgacccatgattcttcttcctgagcatagcc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46582483 |
tggttaattctgccatcaatacaagtagaacattttttctctgcccagctttctatatcatattggccatgacccatgattcttcttcctgagcatagcc |
46582384 |
T |
|
| Q |
219 |
ttccaatcattactgcaattatacccaacacaattatcactacgagaactccaa |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46582383 |
ttccaatcattactgcaattatacccaacacaattatcactacgagaactccaa |
46582330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University