View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7760_low_3 (Length: 466)

Name: NF7760_low_3
Description: NF7760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7760_low_3
NF7760_low_3
[»] chr3 (10 HSPs)
chr3 (201-444)||(24458003-24458246)
chr3 (301-440)||(24476307-24476446)
chr3 (17-134)||(24457819-24457936)
chr3 (17-134)||(24475250-24475367)
chr3 (201-307)||(24475433-24475540)
chr3 (253-307)||(29251219-29251275)
chr3 (234-307)||(19680847-19680922)
chr3 (253-307)||(46552639-46552695)
chr3 (250-307)||(12113477-12113536)
chr3 (234-307)||(35924737-35924812)
[»] chr8 (5 HSPs)
chr8 (234-307)||(32821781-32821856)
chr8 (250-302)||(44400595-44400649)
chr8 (228-307)||(788539-788620)
chr8 (234-301)||(41636575-41636644)
chr8 (275-307)||(33561864-33561896)
[»] chr7 (5 HSPs)
chr7 (234-307)||(9157601-9157676)
chr7 (250-302)||(24862031-24862085)
chr7 (234-306)||(28336987-28337061)
chr7 (251-302)||(24875698-24875751)
chr7 (254-307)||(28606593-28606648)
[»] chr5 (4 HSPs)
chr5 (234-307)||(36977583-36977658)
chr5 (251-307)||(10192760-10192818)
chr5 (250-307)||(5841493-5841552)
chr5 (234-307)||(15936872-15936947)
[»] chr2 (10 HSPs)
chr2 (234-307)||(7634590-7634665)
chr2 (234-307)||(3330826-3330901)
chr2 (234-307)||(5998028-5998103)
chr2 (234-307)||(14660324-14660399)
chr2 (234-304)||(27330391-27330463)
chr2 (234-304)||(33891811-33891883)
chr2 (250-307)||(6201269-6201328)
chr2 (250-307)||(21200216-21200275)
chr2 (250-307)||(21202426-21202485)
chr2 (250-307)||(41399009-41399068)
[»] chr1 (11 HSPs)
chr1 (250-307)||(25892061-25892120)
chr1 (250-307)||(34331484-34331543)
chr1 (234-309)||(36699930-36700007)
chr1 (234-309)||(36716034-36716111)
chr1 (234-304)||(43413512-43413584)
chr1 (250-307)||(13573089-13573148)
chr1 (234-307)||(51161971-51162046)
chr1 (252-307)||(10891347-10891404)
chr1 (250-307)||(15801920-15801979)
chr1 (250-307)||(29152965-29153024)
chr1 (234-307)||(41812169-41812244)
[»] chr4 (4 HSPs)
chr4 (237-307)||(50679994-50680066)
chr4 (268-307)||(46253345-46253384)
chr4 (236-307)||(24968586-24968659)
chr4 (228-307)||(25142106-25142186)
[»] chr6 (4 HSPs)
chr6 (234-307)||(17186908-17186983)
chr6 (250-307)||(21381574-21381633)
chr6 (236-307)||(7793095-7793167)
chr6 (234-303)||(12650243-12650314)
[»] scaffold0024 (1 HSPs)
scaffold0024 (250-304)||(42068-42124)
[»] scaffold0027 (1 HSPs)
scaffold0027 (251-304)||(116834-116889)


Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 201 - 444
Target Start/End: Original strand, 24458003 - 24458246
Alignment:
Q  201 gaagttatttcaaattcgttttcataattaatgaagagattgtgatatacactaacttaaatattcagttagaaattttatatagtaaagatcacatatt 300  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24458003 gaagttattttaaattcgttttcataattaatgaagagattgtgatatacaataacttaaatattcagttagaaattttatatagtaaagatcacatatt 24458102  T
Q  301 ttttcaatcaatttgtaaatcaaaatgtgaataagaataattgatatgctcacctcaaacatatttaagtatttagcaaaaagcaaaggcaacaaccctt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24458103 ttttcaatcaatttgtaaatcaaaatgtgaataagaataattgatatgctcacctcaaacatatttaagtatttagcaaaaagcaaaggcaacaaccctt 24458202  T
Q  401 cccaatcgacattgtggtaatttttaacaacacgagctattaca 444  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  24458203 cccaatcgacattgtggtaatttttaacaacacgagctattaca 24458246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 301 - 440
Target Start/End: Original strand, 24476307 - 24476446
Alignment:
Q  301 ttttcaatcaatttgtaaatcaaaatgtgaataagaataattgatatgctcacctcaaacatatttaagtatttagcaaaaagcaaaggcaacaaccctt 400  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  24476307 ttttcaatcaatttgtaaatcaaaatgtgaataaaaataattgatatgctcacctcaaacatatttaagtatttagcaaaaagcaaaggcaacaacccct 24476406  T
Q  401 cccaatcgacattgtggtaatttttaacaacacgagctat 440  Q
    ||||||| ||||||||||||||||| ||||||||||||||    
T  24476407 cccaatcaacattgtggtaattttttacaacacgagctat 24476446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 24457819 - 24457936
Alignment:
Q  17 atatctttgaatgtttgtatatatgcatgaaagttgatagggaactaaataaatgtggctattaagaagggctttgctggtcttgtggtaaaataatgtg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24457819 atatctttgaatgtttgtatatatgcatgaaagttgatagggaactaaataaatgtggctattaagaagggctttgctggtcttgtggtaaaataatgtg 24457918  T
Q  117 catgtttgttatatattt 134  Q
    ||||||||||||||||||    
T  24457919 catgtttgttatatattt 24457936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 24475250 - 24475367
Alignment:
Q  17 atatctttgaatgtttgtatatatgcatgaaagttgatagggaactaaataaatgtggctattaagaagggctttgctggtcttgtggtaaaataatgtg 116  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||| |  |||||||||||||||| |||||||||    
T  24475250 atatctttcaatgtttgtatatatgcatgaaagttgatagggaactatataaacatggctattaagaaggaccgtgctggtcttgtggtagaataatgtg 24475349  T
Q  117 catgtttgttatatattt 134  Q
    | ||||||||||||||||    
T  24475350 cctgtttgttatatattt 24475367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 201 - 307
Target Start/End: Original strand, 24475433 - 24475540
Alignment:
Q  201 gaagttatttcaaattcgttttcataa-ttaatgaagagattgtgatatacactaacttaaatattcagttagaaattttatatagtaaagatcacatat 299  Q
    |||||||||||||| |||||||||||| |||||||||||||| |||||| ||||||| |||| ||||||||||||| ||||||||||||||||||| |||    
T  24475433 gaagttatttcaaactcgttttcataagttaatgaagagattatgatatgcactaacataaacattcagttagaaaatttatatagtaaagatcacctat 24475532  T
Q  300 tttttcaa 307  Q
    ||||||||    
T  24475533 tttttcaa 24475540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 29251219 - 29251275
Alignment:
Q  253 taacttaaatattca--gttagaaattttatatagtaaagatcacatattttttcaa 307  Q
    |||||||||||||||  |||||| |||||| ||||||||||||||||||||||||||    
T  29251219 taacttaaatattcattgttagagattttacatagtaaagatcacatattttttcaa 29251275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 307
Target Start/End: Complemental strand, 19680922 - 19680847
Alignment:
Q  234 aagagattgtgatatacactaacttaaatattca--gttagaaattttatatagtaaagatcacatattttttcaa 307  Q
    |||||||| |||||| ||||||||||||||||||  ||| ||  ||||| |||||||| |||||||||||||||||    
T  19680922 aagagattttgatattcactaacttaaatattcattgttcgagcttttacatagtaaatatcacatattttttcaa 19680847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 46552639 - 46552695
Alignment:
Q  253 taacttaaatattcagt--tagaaattttatatagtaaagatcacatattttttcaa 307  Q
    ||||||||||||||| |  | || ||||||||||||||| |||||||||||||||||    
T  46552639 taacttaaatattcattattcgagattttatatagtaaaaatcacatattttttcaa 46552695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 307
Target Start/End: Complemental strand, 12113536 - 12113477
Alignment:
Q  250 cactaacttaaatattcagt--tagaaattttatatagtaaagatcacatattttttcaa 307  Q
    |||||||||||||||||| |  | || |||||| |||||||| |||||||||||||||||    
T  12113536 cactaacttaaatattcattgctcgagattttacatagtaaaaatcacatattttttcaa 12113477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 307
Target Start/End: Original strand, 35924737 - 35924812
Alignment:
Q  234 aagagattgtgatatacactaacttaaatattca--gttagaaattttatatagtaaagatcacatattttttcaa 307  Q
    |||||||| ||| || ||||||||||||||||||  ||| || |||||| | |||||| || ||||||||||||||    
T  35924737 aagagattttgacattcactaacttaaatattcattgttcgagattttacacagtaaaaattacatattttttcaa 35924812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 307
Target Start/End: Complemental strand, 32821856 - 32821781
Alignment:
Q  234 aagagattgtgatatacactaacttaaatattca--gttagaaattttatatagtaaagatcacatattttttcaa 307  Q
    |||||||| |||||| ||||||||||||||||||  ||| || ||||||  ||||||| |||||||||||||||||    
T  32821856 aagagattttgatattcactaacttaaatattcattgttcgagattttacttagtaaaaatcacatattttttcaa 32821781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 302
Target Start/End: Complemental strand, 44400649 - 44400595
Alignment:
Q  250 cactaacttaaatattca--gttagaaattttatatagtaaagatcacatatttt 302  Q
    ||||||||||||||||||  |||||| |||||||||| |||| ||||||||||||    
T  44400649 cactaacttaaatattcactgttagagattttatataataaaaatcacatatttt 44400595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 307
Target Start/End: Original strand, 788539 - 788620
Alignment:
Q  228 ttaatgaagagattgtgatatacactaacttaaatattca--gttagaaattttatatagtaaagatcacatattttttcaa 307  Q
    ||||| |||||||| ||| || | ||||||||||||||||  |||    ||||||||||||||| |||||||||||||||||    
T  788539 ttaataaagagattttgacattctctaacttaaatattcattgttcatgattttatatagtaaaaatcacatattttttcaa 788620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 301
Target Start/End: Complemental strand, 41636644 - 41636575
Alignment:
Q  234 aagagattgtgatatacactaacttaaatattca--gttagaaattttatatagtaaagatcacatattt 301  Q
    |||||||| ||| || ||||||||||||||||||  ||| || |||||| |||||||| |||||||||||    
T  41636644 aagagattttgacattcactaacttaaatattcattgttcgagattttagatagtaaaaatcacatattt 41636575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 307
Target Start/End: Original strand, 33561864 - 33561896
Alignment:
Q  275 attttatatagtaaagatcacatattttttcaa 307  Q
    ||||||||||||||| |||||||||||||||||    
T  33561864 attttatatagtaaaaatcacatattttttcaa 33561896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 307
Target Start/End: Original strand, 9157601 - 9157676
Alignment:
Q  234 aagagattgtgatatacactaacttaaatattca--gttagaaattttatatagtaaagatcacatattttttcaa 307  Q
    |||||||| ||| || ||||||||||||||||||  ||| || |||||| |||||||| |||||||||||||||||    
T  9157601 aagagattttgacattcactaacttaaatattcattgtttgagattttacatagtaaaaatcacatattttttcaa 9157676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 302
Target Start/End: Complemental strand, 24862085 - 24862031
Alignment:
Q  250 cactaacttaaatattca--gttagaaattttatatagtaaagatcacatatttt 302  Q
    ||||||||||||||||||  |||||| |||||| |||||||| ||||||||||||    
T  24862085 cactaacttaaatattcattgttagatattttacatagtaaaaatcacatatttt 24862031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 306
Target Start/End: Complemental strand, 28337061 - 28336987
Alignment:
Q  234 aagagattgtgatatacactaacttaaatattca--gttagaaattttatatagtaaagatcacatattttttca 306  Q
    |||||||| ||| || ||||||||||||||||||  |||  | |||||| |||||||| ||||||||||||||||    
T  28337061 aagagattttgacattcactaacttaaatattcattgttcaagattttacatagtaaaaatcacatattttttca 28336987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 302
Target Start/End: Original strand, 24875698 - 24875751
Alignment:
Q  251 actaacttaaatattca--gttagaaattttatatagtaaagatcacatatttt 302  Q
    |||||||||||||||||  |||||| |||||| |||||||| ||||||||||||    
T  24875698 actaacttaaatattcattgttagatattttacatagtaaaaatcacatatttt 24875751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 307
Target Start/End: Original strand, 28606593 - 28606648
Alignment:
Q  254 aacttaaatattca--gttagaaattttatatagtaaagatcacatattttttcaa 307  Q
    ||||||||||||||  ||| || |||||| |||||||| |||||||||||||||||    
T  28606593 aacttaaatattcattgttcgagattttacatagtaaaaatcacatattttttcaa 28606648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 307
Target Start/End: Complemental strand, 36977658 - 36977583
Alignment:
Q  234 aagagattgtgatatacactaacttaaatattca--gttagaaattttatatagtaaagatcacatattttttcaa 307  Q
    |||||||| ||| || ||||||||||||||||||  ||| || |||||| |||||||| |||||||||||||||||    
T  36977658 aagagattttgacattcactaacttaaatattcattgttcgagattttacatagtaaaaatcacatattttttcaa 36977583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 307
Target Start/End: Complemental strand, 10192818 - 10192760
Alignment:
Q  251 actaacttaaatattca--gttagaaattttatatagtaaagatcacatattttttcaa 307  Q
    |||||||||||||||||  ||| || |||||| |||||||| |||||||||||||||||    
T  10192818 actaacttaaatattcattgttcgagattttacatagtaaaaatcacatattttttcaa 10192760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 307
Target Start/End: Complemental strand, 5841552 - 5841493
Alignment:
Q  250 cactaacttaaatattca--gttagaaattttatatagtaaagatcacatattttttcaa 307  Q
    ||||||||||||||||||  ||| || |||||| |||||||| |||||| ||||||||||    
T  5841552 cactaacttaaatattcattgttcgagattttacatagtaaaaatcacacattttttcaa 5841493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 307
Target Start/End: Original strand, 15936872 - 15936947
Alignment:
Q  234 aagagattgtgatatacactaacttaaatattca--gttagaaattttatatagtaaagatcacatattttttcaa 307  Q
    |||||||| ||| || || |||||||||||||||  ||| || |||||| |||||||| || ||||||||||||||    
T  15936872 aagagattttgacattcattaacttaaatattcattgtttgagattttacatagtaaaaattacatattttttcaa 15936947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 307
Target Start/End: Original strand, 7634590 - 7634665
Alignment:
Q  234 aagagattgtgatatacactaacttaaatattca--gttagaaattttatatagtaaagatcacatattttttcaa 307  Q
    |||||||| |||||| ||||||||||||||||||  ||| || |||||| |||||||| | |||||||||||||||    
T  7634590 aagagattttgatattcactaacttaaatattcattgtttgagattttacatagtaaaaagcacatattttttcaa 7634665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 307
Target Start/End: Complemental strand, 3330901 - 3330826
Alignment:
Q  234 aagagattgtgatatacactaacttaaatattcagt--tagaaattttatatagtaaagatcacatattttttcaa 307  Q
    |||||||| ||| || |||||||||||||||||| |  | || ||||||||||||||| |||||||||||| ||||    
T  3330901 aagagattttgacattcactaacttaaatattcattattcgagattttatatagtaaaaatcacatattttctcaa 3330826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 307
Target Start/End: Complemental strand, 5998103 - 5998028
Alignment:
Q  234 aagagattgtgatatacactaacttaaatattca--gttagaaattttatatagtaaagatcacatattttttcaa 307  Q
    |||||||| ||| || ||||||||||||||||||  ||| || |||||| |||||||| || ||||||||||||||    
T  5998103 aagagattttgacattcactaacttaaatattcattgttcgagattttacatagtaaaaattacatattttttcaa 5998028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 307
Target Start/End: Original strand, 14660324 - 14660399
Alignment:
Q  234 aagagattgtgatatacactaacttaaatattca--gttagaaattttatatagtaaagatcacatattttttcaa 307  Q
    |||||||| ||||||  ||||||||||||||| |  ||| || ||||||| ||||||| |||||||||||||||||    
T  14660324 aagagattttgatatttactaacttaaatatttattgttcgagattttatttagtaaaaatcacatattttttcaa 14660399  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 304
Target Start/End: Original strand, 27330391 - 27330463
Alignment:
Q  234 aagagattgtgatatacactaacttaaatattca--gttagaaattttatatagtaaagatcacatatttttt 304  Q
    |||||||| |||  ||||||||||||||||||||  |||  |||||||| |||||||| ||||||| ||||||    
T  27330391 aagagattttgacgtacactaacttaaatattcactgtttaaaattttacatagtaaaaatcacatttttttt 27330463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 304
Target Start/End: Complemental strand, 33891883 - 33891811
Alignment:
Q  234 aagagattgtgatatacactaacttaaatattca--gttagaaattttatatagtaaagatcacatatttttt 304  Q
    |||||||| ||| || ||||||||||||||||||  ||| || |||||| ||| |||| ||||||||||||||    
T  33891883 aagagattttgacattcactaacttaaatattcattgttcgagattttacataataaaaatcacatatttttt 33891811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 307
Target Start/End: Original strand, 6201269 - 6201328
Alignment:
Q  250 cactaacttaaatattca--gttagaaattttatatagtaaagatcacatattttttcaa 307  Q
    ||||||||||||| ||||  ||| || |||||| |||||||| |||||||||||||||||    
T  6201269 cactaacttaaatgttcattgttcgagattttacatagtaaaaatcacatattttttcaa 6201328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 307
Target Start/End: Complemental strand, 21200275 - 21200216
Alignment:
Q  250 cactaacttaaatattca--gttagaaattttatatagtaaagatcacatattttttcaa 307  Q
    ||||||||| ||||||||  ||| || |||||| |||||||| |||||||||||||||||    
T  21200275 cactaacttgaatattcattgttcgagattttacatagtaaaaatcacatattttttcaa 21200216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 307
Target Start/End: Original strand, 21202426 - 21202485
Alignment:
Q  250 cactaacttaaatattca--gttagaaattttatatagtaaagatcacatattttttcaa 307  Q
    ||||||||| ||||||||  ||| || |||||| |||||||| |||||||||||||||||    
T  21202426 cactaacttgaatattcattgttcgagattttacatagtaaaaatcacatattttttcaa 21202485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 307
Target Start/End: Original strand, 41399009 - 41399068
Alignment:
Q  250 cactaacttaaatattca--gttagaaattttatatagtaaagatcacatattttttcaa 307  Q
    ||||||||||||||||||  ||| || |||||| |||||||| | |||||||||||||||    
T  41399009 cactaacttaaatattcattgttcgagattttacatagtaaaaaccacatattttttcaa 41399068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 307
Target Start/End: Complemental strand, 25892120 - 25892061
Alignment:
Q  250 cactaacttaaatattca--gttagaaattttatatagtaaagatcacatattttttcaa 307  Q
    ||||||||||||||||||  ||||||||||||| |||||||| ||| |||||||||||||    
T  25892120 cactaacttaaatattcattgttagaaattttacatagtaaaaatcgcatattttttcaa 25892061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 307
Target Start/End: Original strand, 34331484 - 34331543
Alignment:
Q  250 cactaacttaaatattca--gttagaaattttatatagtaaagatcacatattttttcaa 307  Q
    ||||||||||||||||||  |||||| |||||| |||||||| |||||||||||||||||    
T  34331484 cactaacttaaatattcattgttagagattttacatagtaaaaatcacatattttttcaa 34331543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 309
Target Start/End: Original strand, 36699930 - 36700007
Alignment:
Q  234 aagagattgtgatatacactaacttaaatattca--gttagaaattttatatagtaaagatcacatattttttcaatc 309  Q
    |||||||| ||| || |||||| |||||||||||  ||| || |||||| |||||||| |||||||||||||||||||    
T  36699930 aagagattttgacattcactaatttaaatattcattgttcgagattttacatagtaaaaatcacatattttttcaatc 36700007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 309
Target Start/End: Original strand, 36716034 - 36716111
Alignment:
Q  234 aagagattgtgatatacactaacttaaatattca--gttagaaattttatatagtaaagatcacatattttttcaatc 309  Q
    |||||||| ||| || |||||| |||||||||||  ||| || |||||| |||||||| |||||||||||||||||||    
T  36716034 aagagattttgacattcactaatttaaatattcattgttcgagattttacatagtaaaaatcacatattttttcaatc 36716111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 234 - 304
Target Start/End: Complemental strand, 43413584 - 43413512
Alignment:
Q  234 aagagattgtgatatacactaacttaaatattca--gttagaaattttatatagtaaagatcacatatttttt 304  Q
    |||||||| |||||| ||||||||||||||||||  ||| || |||||| | |||||| ||||||||||||||    
T  43413584 aagagattttgatattcactaacttaaatattcattgtttgagattttacacagtaaaaatcacatatttttt 43413512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 307
Target Start/End: Original strand, 13573089 - 13573148
Alignment:
Q  250 cactaacttaaatattca--gttagaaattttatatagtaaagatcacatattttttcaa 307  Q
    ||||||||||||||||||  ||| || |||||| |||||||| |||||||||||||||||    
T  13573089 cactaacttaaatattcattgttcgagattttaaatagtaaaaatcacatattttttcaa 13573148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 307
Target Start/End: Complemental strand, 51162046 - 51161971
Alignment:
Q  234 aagagattgtgatatacactaacttaaatattca--gttagaaattttatatagtaaagatcacatattttttcaa 307  Q
    |||||||| ||| || ||||||||||||||||||  ||| || |||| | |||||||| |||||||||||||||||    
T  51162046 aagagattttgacattcactaacttaaatattcattgttcgagatttaacatagtaaaaatcacatattttttcaa 51161971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 307
Target Start/End: Original strand, 10891347 - 10891404
Alignment:
Q  252 ctaacttaaatattca--gttagaaattttatatagtaaagatcacatattttttcaa 307  Q
    ||||||||||||||||  |||  |||||||| |||||||| |||||||||||||||||    
T  10891347 ctaacttaaatattcattgttcaaaattttacatagtaaaaatcacatattttttcaa 10891404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 307
Target Start/End: Original strand, 15801920 - 15801979
Alignment:
Q  250 cactaacttaaatattca--gttagaaattttatatagtaaagatcacatattttttcaa 307  Q
    ||||||||||||||||||  ||| || |||||| |||||||| |||| ||||||||||||    
T  15801920 cactaacttaaatattcactgttcgagattttacatagtaaaaatcatatattttttcaa 15801979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 307
Target Start/End: Complemental strand, 29153024 - 29152965
Alignment:
Q  250 cactaacttaaatattca--gttagaaattttatatagtaaagatcacatattttttcaa 307  Q
    |||||||||| |||||||  ||| || |||||| |||||||| |||||||||||||||||    
T  29153024 cactaacttatatattcattgtttgagattttacatagtaaaaatcacatattttttcaa 29152965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 307
Target Start/End: Complemental strand, 41812244 - 41812169
Alignment:
Q  234 aagagattgtgatatacactaacttaaatattca--gttagaaattttatatagtaaagatcacatattttttcaa 307  Q
    |||||||| ||| || ||||||||||||||||||   || || |||||| |||||||| || ||||||||||||||    
T  41812244 aagagattttgacattcactaacttaaatattcattcttcgagattttacatagtaaaaattacatattttttcaa 41812169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 237 - 307
Target Start/End: Complemental strand, 50680066 - 50679994
Alignment:
Q  237 agattgtgatatacactaacttaaatattca--gttagaaattttatatagtaaagatcacatattttttcaa 307  Q
    ||||| ||| || ||||||||||||||||||  ||| || |||||| |||||||| |||||||||||||||||    
T  50680066 agattttgacattcactaacttaaatattcatagttcgagattttacatagtaaaaatcacatattttttcaa 50679994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 307
Target Start/End: Complemental strand, 46253384 - 46253345
Alignment:
Q  268 gttagaaattttatatagtaaagatcacatattttttcaa 307  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  46253384 gttagaaattttacatagtaaaaatcacatattttttcaa 46253345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 307
Target Start/End: Original strand, 24968586 - 24968659
Alignment:
Q  236 gagattgtgatatacactaacttaaatattca--gttagaaattttatatagtaaagatcacatattttttcaa 307  Q
    |||||| ||| || ||||||||||||||||||  ||| || |||||| |||||||| |||||||||||| ||||    
T  24968586 gagattttgacattcactaacttaaatattcattgttcgagattttacatagtaaaaatcacatattttctcaa 24968659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 307
Target Start/End: Original strand, 25142106 - 25142186
Alignment:
Q  228 ttaatgaagagattgtgatatacactaacttaaatattcagt-tagaaattttatatagtaaagatcacatattttttcaa 307  Q
    ||||| |||||||| ||| || |||||||||||||||||| | |  |||||||| |||||||| || ||||| ||||||||    
T  25142106 ttaataaagagattttgacattcactaacttaaatattcattgttcaaattttacatagtaaaaattacatactttttcaa 25142186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 307
Target Start/End: Complemental strand, 17186983 - 17186908
Alignment:
Q  234 aagagattgtgatatacactaacttaaatattca--gttagaaattttatatagtaaagatcacatattttttcaa 307  Q
    |||||||| ||| || ||||||||||||||||||  ||| || |||||| |||||||| |||||||| ||||||||    
T  17186983 aagagattttgacattcactaacttaaatattcattgttcgagattttacatagtaaaaatcacataatttttcaa 17186908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 307
Target Start/End: Complemental strand, 21381633 - 21381574
Alignment:
Q  250 cactaacttaaatattca--gttagaaattttatatagtaaagatcacatattttttcaa 307  Q
    |||||| |||||||||||  ||| ||||||||| |||||||| |||||||||||||||||    
T  21381633 cactaatttaaatattcattgttcgaaattttacatagtaaaaatcacatattttttcaa 21381574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 307
Target Start/End: Original strand, 7793095 - 7793167
Alignment:
Q  236 gagattgtgatatacactaacttaaatattca--gttagaaattttatatagtaaagatcacatattttttcaa 307  Q
    |||||| ||| || ||||||||||||||||||  |||||| |||||| ||| |||| |||||||||||||||||    
T  7793095 gagattttgacattcactaacttaaatattcatcgttagagattttacataataaa-atcacatattttttcaa 7793167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 303
Target Start/End: Complemental strand, 12650314 - 12650243
Alignment:
Q  234 aagagattgtgatatacactaacttaaatattca--gttagaaattttatatagtaaagatcacatattttt 303  Q
    |||||||| ||| || |||||||||| |||||||  ||| ||||||||| || ||||| |||||||||||||    
T  12650314 aagagattttgacattcactaacttacatattcattgttcgaaattttacatcgtaaaaatcacatattttt 12650243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 304
Target Start/End: Original strand, 42068 - 42124
Alignment:
Q  250 cactaacttaaatattca--gttagaaattttatatagtaaagatcacatatttttt 304  Q
    |||| |||||||||||||  ||| || |||||| |||||||||||||||||||||||    
T  42068 cactcacttaaatattcattgttcgagattttacatagtaaagatcacatatttttt 42124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 304
Target Start/End: Complemental strand, 116889 - 116834
Alignment:
Q  251 actaacttaaatattca--gttagaaattttatatagtaaagatcacatatttttt 304  Q
    |||||||||||||||||  ||| || ||||||||| ||||| ||||||||||||||    
T  116889 actaacttaaatattcattgttcgagattttatatggtaaaaatcacatatttttt 116834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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