View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7760_low_5 (Length: 398)

Name: NF7760_low_5
Description: NF7760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7760_low_5
NF7760_low_5
[»] chr7 (5 HSPs)
chr7 (114-360)||(24625133-24625375)
chr7 (9-52)||(24625027-24625069)
chr7 (191-258)||(41020506-41020573)
chr7 (200-258)||(27093404-27093462)
chr7 (200-258)||(27184839-27184897)
[»] chr5 (3 HSPs)
chr5 (193-258)||(23012392-23012457)
chr5 (194-258)||(30502373-30502437)
chr5 (194-258)||(30542716-30542780)
[»] chr4 (5 HSPs)
chr4 (211-258)||(13134460-13134507)
chr4 (211-258)||(40742601-40742648)
chr4 (193-258)||(4781255-4781320)
chr4 (221-258)||(21539879-21539916)
chr4 (214-258)||(999353-999397)
[»] chr2 (3 HSPs)
chr2 (195-258)||(31808087-31808150)
chr2 (201-258)||(37411236-37411293)
chr2 (215-258)||(30527601-30527644)
[»] chr8 (3 HSPs)
chr8 (193-258)||(33405368-33405433)
chr8 (195-258)||(31580113-31580176)
chr8 (194-258)||(38079009-38079073)
[»] chr6 (3 HSPs)
chr6 (193-258)||(13364689-13364754)
chr6 (211-261)||(17411870-17411920)
chr6 (193-258)||(9658889-9658954)
[»] chr1 (4 HSPs)
chr1 (211-258)||(35999324-35999371)
chr1 (194-255)||(13997896-13997957)
chr1 (194-263)||(21530694-21530763)
chr1 (215-263)||(52903254-52903302)
[»] scaffold0697 (1 HSPs)
scaffold0697 (194-263)||(1649-1718)
[»] chr3 (1 HSPs)
chr3 (209-258)||(29508454-29508503)


Alignment Details
Target: chr7 (Bit Score: 135; Significance: 3e-70; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 114 - 360
Target Start/End: Original strand, 24625133 - 24625375
Alignment:
Q  114 ttctctctatgactatcacacatagtacttcctatgttcctattggacactacctatcgagcatggacatttttta-attagacatgtgtcgtgttcaac 212  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| | |||||||||| |||||||| ||||| ||||||||    
T  24625133 ttctctctatgactatcacacatagtacttcctatgttcctattagacactacctattgagcacgaacattttttagattagacacgtgtcatgttcaac 24625232  T
Q  213 atcgacacatataataacactaaattttatgattttcttaaattatcaacgatattaatgtgtctgtatcgtgtctgatgtccgtatttgtgtttcatat 312  Q
    ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||     |||| | ||||||| |  || ||||||||    
T  24625233 atcaacatatataataacactaaattttatgattttcttaaattatcaacgatattaatgtctctg----atgtccg-tgtccgtgtccgtatttcatat 24625327  T
Q  313 gaagttaccctttattactttatttcttatattattaacggtgtcaac 360  Q
    |||  |||||||||||| || ||||||||||||||||||||| |||||    
T  24625328 gaaactaccctttattatttcatttcttatattattaacggtatcaac 24625375  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 24625027 - 24625069
Alignment:
Q  9 acatcaccactaaccacacacactcacacccatatctctctcaa 52  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  24625027 acatcaccactaaccaca-acactcacacccatatctctctcaa 24625069  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 191 - 258
Target Start/End: Complemental strand, 41020573 - 41020506
Alignment:
Q  191 ttagacatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 258  Q
    ||||| ||||||||||||||||| |||| |||||||| |||||||||| | |||||||  ||||||||    
T  41020573 ttagatatgtgtcgtgttcaacaccgacgcatataattacactaaattatgtgatttttgtaaattat 41020506  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 258
Target Start/End: Original strand, 27093404 - 27093462
Alignment:
Q  200 tgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 258  Q
    ||||||||  |||| |||| |||||||| |||||||||| | |||||||||||||||||    
T  27093404 tgtcgtgtctaacaccgacgcatataattacactaaattatgtgattttcttaaattat 27093462  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 258
Target Start/End: Complemental strand, 27184897 - 27184839
Alignment:
Q  200 tgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 258  Q
    ||||||||  |||| |||| |||||||| |||||||||| | |||||||||||||||||    
T  27184897 tgtcgtgtctaacaccgacgcatataattacactaaattatgtgattttcttaaattat 27184839  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 193 - 258
Target Start/End: Original strand, 23012392 - 23012457
Alignment:
Q  193 agacatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 258  Q
    ||||||||||||||| ||||| ||||||||||||| ||| |||||| ||||||||||| |||||||    
T  23012392 agacatgtgtcgtgtccaacaccgacacatataattacattaaattatatgattttctcaaattat 23012457  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 258
Target Start/End: Original strand, 30502373 - 30502437
Alignment:
Q  194 gacatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 258  Q
    |||||||||||||| | ||| ||||||||||||| ||||| ||||   ||||||||| |||||||    
T  30502373 gacatgtgtcgtgtccgacaccgacacatataattacactgaattaagtgattttctcaaattat 30502437  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 258
Target Start/End: Original strand, 30542716 - 30542780
Alignment:
Q  194 gacatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 258  Q
    |||||||||||||| | ||| ||||||||||||| ||||| ||||   ||||||||| |||||||    
T  30542716 gacatgtgtcgtgtccgacaccgacacatataattacactgaattaagtgattttctcaaattat 30542780  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 211 - 258
Target Start/End: Complemental strand, 13134507 - 13134460
Alignment:
Q  211 acatcgacacatataataacactaaattttatgattttcttaaattat 258  Q
    ||||||||||||||||| |||||||||| | |||||||||||||||||    
T  13134507 acatcgacacatataattacactaaattatgtgattttcttaaattat 13134460  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 211 - 258
Target Start/End: Complemental strand, 40742648 - 40742601
Alignment:
Q  211 acatcgacacatataataacactaaattttatgattttcttaaattat 258  Q
    ||||||||||||||||| |||||| ||| ||||||||||| |||||||    
T  40742648 acatcgacacatataattacactagattatatgattttctcaaattat 40742601  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 258
Target Start/End: Complemental strand, 4781320 - 4781255
Alignment:
Q  193 agacatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 258  Q
    ||||||||||| | |  |||||||| ||||||||| |||||||||| ||||| ||| |||||||||    
T  4781320 agacatgtgtcatatctaacatcgatacatataatcacactaaattatatgagttttttaaattat 4781255  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 258
Target Start/End: Original strand, 21539879 - 21539916
Alignment:
Q  221 atataataacactaaattttatgattttcttaaattat 258  Q
    ||||||| |||||||||| |||||||||||||||||||    
T  21539879 atataattacactaaattatatgattttcttaaattat 21539916  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 999353 - 999397
Alignment:
Q  214 tcgacacatataataacactaaattttatgattttcttaaattat 258  Q
    |||||||||||||| |||||||||| |||||||| || |||||||    
T  999353 tcgacacatataattacactaaattatatgatttactcaaattat 999397  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 195 - 258
Target Start/End: Complemental strand, 31808150 - 31808087
Alignment:
Q  195 acatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 258  Q
    |||||||||||||||||||  |||||||||||| ||||| |||| | ||||||| |||||||||    
T  31808150 acatgtgtcgtgttcaacactgacacatataattacactgaattatgtgattttgttaaattat 31808087  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 37411236 - 37411293
Alignment:
Q  201 gtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 258  Q
    ||||||||| ||||||||||||||||| ||||| |||| | ||||||||| |||||||    
T  37411236 gtcgtgttcgacatcgacacatataatcacactgaattatgtgattttctcaaattat 37411293  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 30527601 - 30527644
Alignment:
Q  215 cgacacatataataacactaaattttatgattttcttaaattat 258  Q
    ||||||||||||| |||||||||| ||||||||||| |||||||    
T  30527601 cgacacatataattacactaaattatatgattttctcaaattat 30527644  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 258
Target Start/End: Original strand, 33405368 - 33405433
Alignment:
Q  193 agacatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 258  Q
    ||||||||||||||| | ||| ||||||||||||| |||||||||| | || |||||| |||||||    
T  33405368 agacatgtgtcgtgtccgacaccgacacatataattacactaaattatgtgtttttctcaaattat 33405433  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 195 - 258
Target Start/End: Original strand, 31580113 - 31580176
Alignment:
Q  195 acatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 258  Q
    |||||||||| || | |||||||||| |||||| ||||| |||| | |||||||||||||||||    
T  31580113 acatgtgtcgcgtccgacatcgacacctataattacactcaattatgtgattttcttaaattat 31580176  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 258
Target Start/End: Complemental strand, 38079073 - 38079009
Alignment:
Q  194 gacatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 258  Q
    |||||| ||||||| | |||||||| |||||||| ||||| |||  | |||||||||||||||||    
T  38079073 gacatgcgtcgtgtccgacatcgacgcatataattacactgaatcatgtgattttcttaaattat 38079009  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 258
Target Start/End: Original strand, 13364689 - 13364754
Alignment:
Q  193 agacatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 258  Q
    |||||||| |||||| ||||| |||||||||| || ||||| |||| ||||||||||| |||||||    
T  13364689 agacatgtatcgtgtccaacaccgacacatatgattacactgaattatatgattttctcaaattat 13364754  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 261
Target Start/End: Original strand, 17411870 - 17411920
Alignment:
Q  211 acatcgacacatataataacactaaattttatgattttcttaaattatcaa 261  Q
    ||||| ||||||||||| | ||| |||| ||||||||||||||||||||||    
T  17411870 acatccacacatataattatactgaattatatgattttcttaaattatcaa 17411920  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 258
Target Start/End: Complemental strand, 9658954 - 9658889
Alignment:
Q  193 agacatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattat 258  Q
    ||||| |||||||||  |||| ||||| ||||||| ||||| |||| | |||||||||||||||||    
T  9658954 agacacgtgtcgtgtctaacaccgacaaatataattacactgaattatgtgattttcttaaattat 9658889  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 211 - 258
Target Start/End: Original strand, 35999324 - 35999371
Alignment:
Q  211 acatcgacacatataataacactaaattttatgattttcttaaattat 258  Q
    ||||| ||||||||||| | |||||||| |||||||||||||||||||    
T  35999324 acatcaacacatataattatactaaattatatgattttcttaaattat 35999371  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 255
Target Start/End: Complemental strand, 13997957 - 13997896
Alignment:
Q  194 gacatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaat 255  Q
    |||||||||||| | ||||| ||||||||||||| ||||| |||| | ||||||| ||||||    
T  13997957 gacatgtgtcgtctccaacaccgacacatataattacactgaattatgtgatttttttaaat 13997896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 263
Target Start/End: Complemental strand, 21530763 - 21530694
Alignment:
Q  194 gacatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattatcaacg 263  Q
    |||||||||||||| | ||| |||||| |||||| | || ||||| ||||||||||| ||||||| ||||    
T  21530763 gacatgtgtcgtgtccgacaccgacacttataattataccaaattatatgattttctcaaattattaacg 21530694  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 52903302 - 52903254
Alignment:
Q  215 cgacacatataataacactaaattttatgattttcttaaattatcaacg 263  Q
    ||||||||||||| ||||| |||| ||||||||| ||||||||| ||||    
T  52903302 cgacacatataattacactgaattatatgattttattaaattattaacg 52903254  T

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Target: scaffold0697 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 263
Target Start/End: Complemental strand, 1718 - 1649
Alignment:
Q  194 gacatgtgtcgtgttcaacatcgacacatataataacactaaattttatgattttcttaaattatcaacg 263  Q
    |||||||||||||| | ||| |||||| |||||| | || ||||| ||||||||||| ||||||| ||||    
T  1718 gacatgtgtcgtgtccgacaccgacacttataattataccaaattatatgattttctcaaattattaacg 1649  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 29508503 - 29508454
Alignment:
Q  209 caacatcgacacatataataacactaaattttatgattttcttaaattat 258  Q
    ||||||||||||||||||| ||||| |||| ||||||||| | |||||||    
T  29508503 caacatcgacacatataattacactgaattatatgattttttcaaattat 29508454  T

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