View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7760_low_7 (Length: 309)
Name: NF7760_low_7
Description: NF7760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7760_low_7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 46582118 - 46581811
Alignment:
| Q |
1 |
aataagcgatgcggagttaaacagaattactactggcaccactttaattacttgtaatgaagattgtaggagagtgtagaagaatgcatgttattattat |
100 |
Q |
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| T |
46582118 |
aataagcaatgcggagttaaacagaattactactggcaccactttaattacttgtaatgaagattgtaggagagtgtaaaagaatgcatgttattattat |
46582019 |
T |
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| Q |
101 |
ttggatgcttggtgagatgttgttatgagacattctcattctgaaattctctttgtaaaggacgacttatattatatagcagatataaagaaatatctgc |
200 |
Q |
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| T |
46582018 |
ttggatgcttgatgagatgttgttatgagacattctcattctgaaattctcgttgtaaaggatgacttatattatatagcagatataaagaaatatctgc |
46581919 |
T |
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| Q |
201 |
tttgcttatttctttagaaagagaaagggtttaagaattttgtattctttgatannnnnnnnnnaatttctcacatatttacttcaccagaatagaatca |
300 |
Q |
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| T |
46581918 |
tttgcttatttctttagaaagagaaagggtttaagaattttgtattctttgat-ttttttttttaatttctcacatatttacttcactagaatagaatca |
46581820 |
T |
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| Q |
301 |
ctgtcatac |
309 |
Q |
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| T |
46581819 |
ctgtcatac |
46581811 |
T |
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