View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7761_high_19 (Length: 237)

Name: NF7761_high_19
Description: NF7761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7761_high_19
NF7761_high_19
[»] chr6 (3 HSPs)
chr6 (1-221)||(34496559-34496779)
chr6 (1-106)||(15701544-15701649)
chr6 (1-106)||(21439622-21439727)
[»] chr1 (4 HSPs)
chr1 (1-223)||(8370898-8371120)
chr1 (1-106)||(40046884-40046989)
chr1 (3-106)||(20394397-20394500)
chr1 (1-107)||(28047493-28047599)
[»] scaffold0011 (2 HSPs)
scaffold0011 (1-223)||(204383-204605)
scaffold0011 (1-223)||(210460-210682)
[»] chr8 (1 HSPs)
chr8 (49-122)||(32802349-32802422)
[»] chr2 (1 HSPs)
chr2 (7-106)||(31696361-31696460)
[»] chr4 (2 HSPs)
chr4 (1-106)||(14447493-14447598)
chr4 (2-98)||(37737686-37737782)
[»] chr7 (1 HSPs)
chr7 (7-143)||(29941672-29941808)
[»] chr3 (1 HSPs)
chr3 (1-53)||(30319192-30319244)


Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 34496559 - 34496779
Alignment:
Q  1 agagggggtgttggatgaccaacaactcctaccaaaatgaaactcttaagttggaattgcagggggttggggaaccctcgggcaattcgagccttgttaa 100  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34496559 agaggaggtgttggatgaccaacacctcctaccaaaatgaaactcttaagttggaattgcagggggttggggaaccctcgggcaattcgagccatgttaa 34496658  T
Q  101 ggctcaaccgtattcaaaatcctcaagtatctttcttaatggaaactaggttaaagtctgatgagatggagtgtgttagaataaaggctggtttctcctc 200  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  34496659 ggctcaaccgtattcaaaatcctcaagtagttttcttaatggaaactaggttaaagtctgatgagatggagtgttttagaataaaggctggtttctcctc 34496758  T
Q  201 tggtctgtttgttccttgtga 221  Q
    |||||||||||||||||||||    
T  34496759 tggtctgtttgttccttgtga 34496779  T

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Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 15701544 - 15701649
Alignment:
Q  1 agagggggtgttggatgaccaacaactcctaccaaaatgaaactcttaagttggaattgcagggggttggggaaccctcgggcaattcgagccttgttaa 100  Q
    |||||||||||||||||||||||| |||||| |  ||||||| || |||||||||| ||||| ||||||||||||||||||||| |||||||||||||||    
T  15701544 agagggggtgttggatgaccaacacctcctatcccaatgaaaatcctaagttggaactgcagagggttggggaaccctcgggcagttcgagccttgttaa 15701643  T
Q  101 ggctca 106  Q
    ||||||    
T  15701644 ggctca 15701649  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 21439727 - 21439622
Alignment:
Q  1 agagggggtgttggatgaccaacaactcctaccaaaatgaaactcttaagttggaattgcagggggttggggaaccctcgggcaattcgagccttgttaa 100  Q
    ||||| |||||||||||||||||| | ||||    ||||||| |  | |||||||| ||||||||| ||||||||||||||||| |||||||||||||||    
T  21439727 agaggtggtgttggatgaccaacaccgcctaatccaatgaaaatactcagttggaactgcagggggctggggaaccctcgggcagttcgagccttgttaa 21439628  T
Q  101 ggctca 106  Q
    ||||||    
T  21439627 ggctca 21439622  T

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Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 8371120 - 8370898
Alignment:
Q  1 agagggggtgttggatgaccaacaactcctaccaaaatgaaactcttaagttggaattgcagggggttggggaaccctcgggcaattcgagccttgttaa 100  Q
    |||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8371120 agagggggtgttggatgaccaacacctcctaccccaatgaaactcttaagttggaattgtagggggttggggaaccctcgggcaattcgagccttgttaa 8371021  T
Q  101 ggctcaaccgtattcaaaatcctcaagtatctttcttaatggaaactaggttaaagtctgatgagatggagtgtgttagaataaaggctggtttctcctc 200  Q
    |||||| |||||| |||||||||||||||  |||||||||||||||||| |||||||||||||| |||||| | || ||||| ||   ||| ||||| ||    
T  8371020 ggctcatccgtatccaaaatcctcaagtagttttcttaatggaaactagattaaagtctgatgaaatggagagagtcagaatcaattgtggattctcttc 8370921  T
Q  201 tggtctgtttgttccttgtgatg 223  Q
    |||| ||||||||||||||||||    
T  8370920 tggtttgtttgttccttgtgatg 8370898  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 40046884 - 40046989
Alignment:
Q  1 agagggggtgttggatgaccaacaactcctaccaaaatgaaactcttaagttggaattgcagggggttggggaa-ccctcgggcaattcgagccttgtta 99  Q
    |||||||||||||||||||||||| ||||| ||  ||||||| |||| |||||||| ||||||||||||||||| ||||| |||| ||| |||||||||     
T  40046884 agagggggtgttggatgaccaacacctccttccccaatgaaaatcttgagttggaactgcagggggttggggaatccctc-ggcagttcaagccttgttg 40046982  T
Q  100 aggctca 106  Q
    |||||||    
T  40046983 aggctca 40046989  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 20394500 - 20394397
Alignment:
Q  3 agggggtgttggatgaccaacaactcctaccaaaatgaaactcttaagttggaattgcagggggttggggaaccctcgggcaattcgagccttgttaagg 102  Q
    |||||||||||||||||||||| | ||||    ||||||| || |||||||||| ||  ||||||||||||||||||| ||| |||||||||||| ||||    
T  20394500 agggggtgttggatgaccaacaccgcctagaccaatgaaaatcataagttggaactgtcgggggttggggaaccctcgagcagttcgagccttgtcaagg 20394401  T
Q  103 ctca 106  Q
    ||||    
T  20394400 ctca 20394397  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 28047493 - 28047599
Alignment:
Q  1 agagggggtgttggatgaccaacaactcctaccaaaatgaaactcttaagttggaattgcagggggttggggaaccctcgggcaattcgagccttgttaa 100  Q
    ||||||||||||||||||| |||| |  |   || ||||||| |||| |||||||| ||  |||||||||| |||||||| ||| |||| ||||||||||    
T  28047493 agagggggtgttggatgacaaacaccagccttcataatgaaaatcttgagttggaactgtcgggggttgggaaaccctcgagcagttcgggccttgttaa 28047592  T
Q  101 ggctcaa 107  Q
    |||||||    
T  28047593 ggctcaa 28047599  T

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Target: scaffold0011 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 204605 - 204383
Alignment:
Q  1 agagggggtgttggatgaccaacaactcctaccaaaatgaaactcttaagttggaattgcagggggttggggaaccctcgggcaattcgagccttgttaa 100  Q
    |||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  204605 agagggggtgttggatgaccaacacctcctaccccaatgaaactcttaagttggaattgcagggggttggggaaccctcaggcaatttgagccttgttaa 204506  T
Q  101 ggctcaaccgtattcaaaatcctcaagtatctttcttaatggaaactaggttaaagtctgatgagatggagtgtgttagaataaaggctggtttctcctc 200  Q
    |||| |||||||| |||||||||||||||  |||||||||||||||||| ||||| |||||||| |||||| | || ||||| ||   ||| ||||| ||    
T  204505 ggcttaaccgtatccaaaatcctcaagtagttttcttaatggaaactagattaaattctgatgaaatggagagagtcagaatcaattgtggattctcttc 204406  T
Q  201 tggtctgtttgttccttgtgatg 223  Q
    |||| ||||||||||||||||||    
T  204405 tggtttgtttgttccttgtgatg 204383  T

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Target: scaffold0011; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 210682 - 210460
Alignment:
Q  1 agagggggtgttggatgaccaacaactcctaccaaaatgaaactcttaagttggaattgcagggggttggggaaccctcgggcaattcgagccttgttaa 100  Q
    |||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  210682 agagggggtgttggatgaccaacacctcctaccccaatgaaactcttaagttggaattgcagggggttggggaaccctcaggcaatttgagccttgttaa 210583  T
Q  101 ggctcaaccgtattcaaaatcctcaagtatctttcttaatggaaactaggttaaagtctgatgagatggagtgtgttagaataaaggctggtttctcctc 200  Q
    |||| |||||||| |||||||||||||||  |||||||||||||||||| ||||| |||||||| |||||| | || ||||| ||   ||| ||||| ||    
T  210582 ggcttaaccgtatccaaaatcctcaagtagttttcttaatggaaactagattaaattctgatgaaatggagagagtcagaatcaattgtggattctcttc 210483  T
Q  201 tggtctgtttgttccttgtgatg 223  Q
    |||| ||||||||||||||||||    
T  210482 tggtttgtttgttccttgtgatg 210460  T

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Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 49 - 122
Target Start/End: Original strand, 32802349 - 32802422
Alignment:
Q  49 agttggaattgcagggggttggggaaccctcgggcaattcgagccttgttaaggctcaaccgtattcaaaatcc 122  Q
    |||||||| |||||||| ||||||||||||| |||| ||||||||||||||||||||| ||||||| |||||||    
T  32802349 agttggaactgcaggggtttggggaaccctctggcagttcgagccttgttaaggctcacccgtattgaaaatcc 32802422  T

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Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 31696361 - 31696460
Alignment:
Q  7 ggtgttggatgaccaacaactcctaccaaaatgaaactcttaagttggaattgcagggggttggggaaccctcgggcaattcgagccttgttaaggctca 106  Q
    ||||||||||||||||||   |||| |  ||||||| |  |||| ||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  31696361 ggtgttggatgaccaacactgcctagcccaatgaaaatactaagctggaactgcagggggttggggaaccctcgggcagttcgagccttgtcaaggctca 31696460  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 14447598 - 14447493
Alignment:
Q  1 agagggggtgttggatgaccaacaactcctaccaaaatgaaactcttaagttggaattgcagggggttggggaaccctcgggcaattcgagccttgttaa 100  Q
    |||||||||||||||||||||||| |||||| |  |||||||||  |||||||||| ||  |||| |||||||  ||||||||| ||||||||||  |||    
T  14447598 agagggggtgttggatgaccaacacctcctatcccaatgaaacttataagttggaactgtcggggattggggagtcctcgggcagttcgagcctttgtaa 14447499  T
Q  101 ggctca 106  Q
    ||||||    
T  14447498 ggctca 14447493  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 37737686 - 37737782
Alignment:
Q  2 gagggggtgttggatgaccaacaactcctaccaaaatgaaactcttaagttggaattgcagggggttggggaaccctcgggcaattcgagccttgtt 98  Q
    |||||||||||||||| | |||| ||||||  | ||||||| |  ||||||||||||| |||| ||| || ||| |||| |||||| | ||||||||    
T  37737686 gagggggtgttggatgcctaacacctcctaaaacaatgaaaattctaagttggaattgtagggagtttggaaactctcgagcaattagggccttgtt 37737782  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 143
Target Start/End: Original strand, 29941672 - 29941808
Alignment:
Q  7 ggtgttggatgaccaacaactcctaccaaaatgaaactcttaagttggaattgcagggggttggggaaccctcgggcaattcgagccttgttaaggctca 106  Q
    |||||||||||||||||| | || |  |  |||||| || |||||||||| ||  ||||||| ||||  || | |||| |||||||||||||||||||||    
T  29941672 ggtgttggatgaccaacaccgccaagaaccatgaaaatcctaagttggaactgtcgggggttagggagtccccaggcagttcgagccttgttaaggctca 29941771  T
Q  107 accgtattcaaaatcctcaagtatctttcttaatgga 143  Q
     ||||||| |||| || ||| ||   |||||||||||    
T  29941772 cccgtattgaaaacccccaaatagtcttcttaatgga 29941808  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 30319192 - 30319244
Alignment:
Q  1 agagggggtgttggatgaccaacaactcctaccaaaatgaaactcttaagttg 53  Q
    |||||||||||| ||||||||||| |||| |||  ||||||| ||||||||||    
T  30319192 agagggggtgttagatgaccaacacctcccacccgaatgaaaatcttaagttg 30319244  T

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